data_5XTD # _model_server_result.job_id oyrAgJTLj1yx54tKzHO9oQ _model_server_result.datetime_utc '2024-11-23 03:45:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JB","auth_seq_id":201}' # _entry.id 5XTD # _exptl.entry_id 5XTD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.073 _entity.id 52 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 45-meric _pdbx_struct_assembly.oligomeric_count 45 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 52 HB N N ? 52 JB N N ? 52 PB N N ? 52 QB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 T SG CYS 94 V CYS 95 1_555 T SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 AA SG CYS 111 c CYS 144 1_555 JA SG CYS 279 l CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 BA SG CYS 149 d CYS 149 1_555 CA SG CYS 88 e CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 FA SG CYS 32 h CYS 33 1_555 FA SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 FA SG CYS 42 h CYS 43 1_555 FA SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 QA SG CYS 75 u CYS 78 1_555 QA SG CYS 107 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 RA SG CYS 69 v CYS 69 1_555 RA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc1 A NE2 GLN 355 A GLN 381 1_555 TA FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc2 B N CYS 80 B CYS 114 1_555 VA FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc3 B N GLY 120 B GLY 154 1_555 WA FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc4 C SG CYS 32 C CYS 89 1_555 YA FE2 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 L NE2 HIS 95 M HIS 124 1_555 BB FE3 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 L SG CYS 108 M CYS 137 1_555 BB FE4 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? covale ? covale1 L SG CYS 147 M CYS 176 1_555 CB S3 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc7 L SG CYS 147 M CYS 176 1_555 CB FE1 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc8 L O CYS 150 M CYS 179 1_555 CB FE1 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc9 N SG CYS 141 O CYS 176 1_555 EB FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc10 N SG CYS 145 O CYS 180 1_555 EB FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'C41 H83 N O8 P 1' _chem_comp.formula_weight 749.073 _chem_comp.id PEE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 5XTD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code TA 45 SF4 A 1 501 501 SF4 SF4 . UA 46 FMN A 1 502 502 FMN FMN . VA 45 SF4 B 1 301 301 SF4 SF4 . WA 45 SF4 B 1 302 302 SF4 SF4 . XA 47 PLX B 1 303 401 PLX PLX . YA 45 SF4 C 1 301 301 SF4 SF4 . ZA 48 8Q1 E 1 201 201 8Q1 8Q1 . AB 49 NDP J 1 401 401 NDP NDP . BB 45 SF4 M 1 801 801 SF4 SF4 . CB 45 SF4 M 1 802 802 SF4 SF4 . DB 50 FES M 1 803 803 FES FES . EB 50 FES O 1 301 301 FES FES . FB 47 PLX U 1 101 101 PLX PLX . GB 51 CDL V 1 201 201 CDL CDL . HB 52 PEE V 1 202 202 PEE PEE . IB 47 PLX V 1 203 203 PLX PLX . JB 52 PEE W 1 201 201 PEE PEE . KB 47 PLX b 1 201 201 PLX PLX . LB 47 PLX g 1 201 201 PLX PLX . MB 47 PLX g 1 202 202 PLX PLX . NB 47 PLX g 1 203 203 PLX PLX . OB 51 CDL i 1 401 401 CDL CDL . PB 52 PEE l 1 701 701 PEE PEE . QB 52 PEE l 1 702 702 PEE PEE . RB 51 CDL l 1 703 703 CDL CDL . SB 51 CDL l 1 704 704 CDL CDL . TB 51 CDL n 1 101 101 CDL CDL . UB 48 8Q1 p 1 201 201 8Q1 8Q1 . VB 47 PLX r 1 501 501 PLX PLX . WB 47 PLX r 1 502 502 PLX PLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEE . . . JB 52 224.544 178.168 231.926 1 20 ? C2 PEE 201 W 1 HETATM 2 C C1 PEE . . . JB 52 225.31 178.061 230.604 1 20 ? C1 PEE 201 W 1 HETATM 3 N N PEE . . . JB 52 224.103 177.699 225.907 1 20 ? N PEE 201 W 1 HETATM 4 C C3 PEE . . . JB 52 225.416 177.979 233.174 1 20 ? C3 PEE 201 W 1 HETATM 5 C C4 PEE . . . JB 52 224.267 175.3 226.358 1 20 ? C4 PEE 201 W 1 HETATM 6 C C5 PEE . . . JB 52 223.715 176.386 225.436 1 20 ? C5 PEE 201 W 1 HETATM 7 C C10 PEE . . . JB 52 222.855 179.519 230.937 1 20 ? C10 PEE 201 W 1 HETATM 8 C C11 PEE . . . JB 52 222.493 180.921 230.443 1 20 ? C11 PEE 201 W 1 HETATM 9 C C12 PEE . . . JB 52 221.839 181.754 231.549 1 20 ? C12 PEE 201 W 1 HETATM 10 C C13 PEE . . . JB 52 222.043 183.25 231.338 1 20 ? C13 PEE 201 W 1 HETATM 11 C C14 PEE . . . JB 52 222.034 184.021 232.661 1 20 ? C14 PEE 201 W 1 HETATM 12 C C15 PEE . . . JB 52 221.112 183.379 233.697 1 20 ? C15 PEE 201 W 1 HETATM 13 C C16 PEE . . . JB 52 221.684 183.482 235.109 1 20 ? C16 PEE 201 W 1 HETATM 14 C C17 PEE . . . JB 52 220.847 184.394 236.004 1 20 ? C17 PEE 201 W 1 HETATM 15 C C18 PEE . . . JB 52 219.858 185.235 235.201 1 20 ? C18 PEE 201 W 1 HETATM 16 C C19 PEE . . . JB 52 219.86 186.7 235.642 1 20 ? C19 PEE 201 W 1 HETATM 17 C C20 PEE . . . JB 52 219.181 186.907 237 1 20 ? C20 PEE 201 W 1 HETATM 18 C C21 PEE . . . JB 52 220.113 187.561 238.024 1 20 ? C21 PEE 201 W 1 HETATM 19 C C22 PEE . . . JB 52 220.733 186.542 238.982 1 20 ? C22 PEE 201 W 1 HETATM 20 C C23 PEE . . . JB 52 221.593 187.222 240.05 1 20 ? C23 PEE 201 W 1 HETATM 21 C C24 PEE . . . JB 52 221.291 188.715 240.161 1 20 ? C24 PEE 201 W 1 HETATM 22 C C25 PEE . . . JB 52 221.977 189.37 241.36 1 20 ? C25 PEE 201 W 1 HETATM 23 C C26 PEE . . . JB 52 221.041 189.515 242.558 1 20 ? C26 PEE 201 W 1 HETATM 24 C C27 PEE . . . JB 52 221.783 189.965 243.813 1 20 ? C27 PEE 201 W 1 HETATM 25 C C30 PEE . . . JB 52 224.904 179.624 234.741 1 20 ? C30 PEE 201 W 1 HETATM 26 C C31 PEE . . . JB 52 225.354 179.738 236.193 1 20 ? C31 PEE 201 W 1 HETATM 27 C C32 PEE . . . JB 52 224.886 181.041 236.832 1 20 ? C32 PEE 201 W 1 HETATM 28 C C33 PEE . . . JB 52 223.369 181.204 236.772 1 20 ? C33 PEE 201 W 1 HETATM 29 C C34 PEE . . . JB 52 222.84 181.968 237.979 1 20 ? C34 PEE 201 W 1 HETATM 30 C C35 PEE . . . JB 52 223.77 181.849 239.173 1 20 ? C35 PEE 201 W 1 HETATM 31 C C36 PEE . . . JB 52 223.929 183.175 239.899 1 20 ? C36 PEE 201 W 1 HETATM 32 C C37 PEE . . . JB 52 223.983 183.004 241.413 1 20 ? C37 PEE 201 W 1 HETATM 33 C C38 PEE . . . JB 52 223.469 184.237 242.15 1 20 ? C38 PEE 201 W 1 HETATM 34 C C39 PEE . . . JB 52 222.8 183.879 243.474 1 20 ? C39 PEE 201 W 1 HETATM 35 C C40 PEE . . . JB 52 223.074 184.921 244.552 1 20 ? C40 PEE 201 W 1 HETATM 36 C C41 PEE . . . JB 52 221.789 185.431 245.201 1 20 ? C41 PEE 201 W 1 HETATM 37 C C42 PEE . . . JB 52 222.04 186.629 246.117 1 20 ? C42 PEE 201 W 1 HETATM 38 C C43 PEE . . . JB 52 220.761 187.139 246.781 1 20 ? C43 PEE 201 W 1 HETATM 39 C C44 PEE . . . JB 52 220.928 187.378 248.283 1 20 ? C44 PEE 201 W 1 HETATM 40 C C45 PEE . . . JB 52 219.596 187.31 249.022 1 20 ? C45 PEE 201 W 1 HETATM 41 C C46 PEE . . . JB 52 218.974 188.69 249.226 1 20 ? C46 PEE 201 W 1 HETATM 42 C C47 PEE . . . JB 52 217.67 188.866 248.45 1 20 ? C47 PEE 201 W 1 HETATM 43 O O4 PEE . . . JB 52 222.312 178.579 230.474 1 20 ? O4 PEE 201 W 1 HETATM 44 O O5 PEE . . . JB 52 223.798 179.895 234.446 1 20 ? O5 PEE 201 W 1 HETATM 45 O O2 PEE . . . JB 52 223.815 179.371 231.947 1 20 ? O2 PEE 201 W 1 HETATM 46 O O3 PEE . . . JB 52 225.794 179.191 233.759 1 20 ? O3 PEE 201 W 1 HETATM 47 O O1P PEE . . . JB 52 226.343 175.915 228.87 1 20 ? O1P PEE 201 W 1 HETATM 48 O O2P PEE . . . JB 52 225.585 177.688 227.362 1 20 ? O2P PEE 201 W 1 HETATM 49 O O3P PEE . . . JB 52 224.459 177.469 229.659 1 20 ? O3P PEE 201 W 1 HETATM 50 O O4P PEE . . . JB 52 224.046 175.676 227.688 1 20 ? O4P PEE 201 W 1 HETATM 51 P P PEE . . . JB 52 225.144 176.683 228.386 1 20 ? P PEE 201 W 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 136 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 51 #