data_5XTD # _model_server_result.job_id QDqRbDBM-KqmBvgu00NOTQ _model_server_result.datetime_utc '2024-11-26 20:09:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AB","auth_seq_id":401}' # _entry.id 5XTD # _exptl.entry_id 5XTD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 49 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 45-meric _pdbx_struct_assembly.oligomeric_count 45 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 49 _struct_asym.id AB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 T SG CYS 94 V CYS 95 1_555 T SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 AA SG CYS 111 c CYS 144 1_555 JA SG CYS 279 l CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 BA SG CYS 149 d CYS 149 1_555 CA SG CYS 88 e CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 FA SG CYS 32 h CYS 33 1_555 FA SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 FA SG CYS 42 h CYS 43 1_555 FA SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 QA SG CYS 75 u CYS 78 1_555 QA SG CYS 107 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 RA SG CYS 69 v CYS 69 1_555 RA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc1 A NE2 GLN 355 A GLN 381 1_555 TA FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc2 B N CYS 80 B CYS 114 1_555 VA FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc3 B N GLY 120 B GLY 154 1_555 WA FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc4 C SG CYS 32 C CYS 89 1_555 YA FE2 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 L NE2 HIS 95 M HIS 124 1_555 BB FE3 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 L SG CYS 108 M CYS 137 1_555 BB FE4 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? covale ? covale1 L SG CYS 147 M CYS 176 1_555 CB S3 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc7 L SG CYS 147 M CYS 176 1_555 CB FE1 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc8 L O CYS 150 M CYS 179 1_555 CB FE1 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc9 N SG CYS 141 O CYS 176 1_555 EB FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc10 N SG CYS 145 O CYS 180 1_555 EB FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XTD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code TA 45 SF4 A 1 501 501 SF4 SF4 . UA 46 FMN A 1 502 502 FMN FMN . VA 45 SF4 B 1 301 301 SF4 SF4 . WA 45 SF4 B 1 302 302 SF4 SF4 . XA 47 PLX B 1 303 401 PLX PLX . YA 45 SF4 C 1 301 301 SF4 SF4 . ZA 48 8Q1 E 1 201 201 8Q1 8Q1 . AB 49 NDP J 1 401 401 NDP NDP . BB 45 SF4 M 1 801 801 SF4 SF4 . CB 45 SF4 M 1 802 802 SF4 SF4 . DB 50 FES M 1 803 803 FES FES . EB 50 FES O 1 301 301 FES FES . FB 47 PLX U 1 101 101 PLX PLX . GB 51 CDL V 1 201 201 CDL CDL . HB 52 PEE V 1 202 202 PEE PEE . IB 47 PLX V 1 203 203 PLX PLX . JB 52 PEE W 1 201 201 PEE PEE . KB 47 PLX b 1 201 201 PLX PLX . LB 47 PLX g 1 201 201 PLX PLX . MB 47 PLX g 1 202 202 PLX PLX . NB 47 PLX g 1 203 203 PLX PLX . OB 51 CDL i 1 401 401 CDL CDL . PB 52 PEE l 1 701 701 PEE PEE . QB 52 PEE l 1 702 702 PEE PEE . RB 51 CDL l 1 703 703 CDL CDL . SB 51 CDL l 1 704 704 CDL CDL . TB 51 CDL n 1 101 101 CDL CDL . UB 48 8Q1 p 1 201 201 8Q1 8Q1 . VB 47 PLX r 1 501 501 PLX PLX . WB 47 PLX r 1 502 502 PLX PLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . AB 49 194.281 200.95 278.805 1 84.44 ? PA NDP 401 J 1 HETATM 2 O O1A NDP . . . AB 49 193.624 200.648 277.494 1 84.44 ? O1A NDP 401 J 1 HETATM 3 O O2A NDP . . . AB 49 195.714 200.581 279.016 1 84.44 ? O2A NDP 401 J 1 HETATM 4 O O5B NDP . . . AB 49 193.386 200.322 279.972 1 84.44 ? O5B NDP 401 J 1 HETATM 5 C C5B NDP . . . AB 49 192.061 199.902 279.701 1 84.44 ? C5B NDP 401 J 1 HETATM 6 C C4B NDP . . . AB 49 191.92 198.44 280.061 1 84.44 ? C4B NDP 401 J 1 HETATM 7 O O4B NDP . . . AB 49 190.552 198.193 280.34 1 84.44 ? O4B NDP 401 J 1 HETATM 8 C C3B NDP . . . AB 49 192.279 197.546 278.893 1 84.44 ? C3B NDP 401 J 1 HETATM 9 O O3B NDP . . . AB 49 192.911 196.377 279.411 1 84.44 ? O3B NDP 401 J 1 HETATM 10 C C2B NDP . . . AB 49 190.945 197.165 278.296 1 84.44 ? C2B NDP 401 J 1 HETATM 11 O O2B NDP . . . AB 49 190.985 195.923 277.582 1 84.44 ? O2B NDP 401 J 1 HETATM 12 C C1B NDP . . . AB 49 190.064 197.138 279.522 1 84.44 ? C1B NDP 401 J 1 HETATM 13 N N9A NDP . . . AB 49 188.636 197.35 279.219 1 84.44 ? N9A NDP 401 J 1 HETATM 14 C C8A NDP . . . AB 49 187.939 198.459 279.48 1 84.44 ? C8A NDP 401 J 1 HETATM 15 N N7A NDP . . . AB 49 186.65 198.319 279.1 1 84.44 ? N7A NDP 401 J 1 HETATM 16 C C5A NDP . . . AB 49 186.512 197.095 278.593 1 84.44 ? C5A NDP 401 J 1 HETATM 17 C C6A NDP . . . AB 49 185.416 196.309 278.015 1 84.44 ? C6A NDP 401 J 1 HETATM 18 N N6A NDP . . . AB 49 184.184 196.842 277.908 1 84.44 ? N6A NDP 401 J 1 HETATM 19 N N1A NDP . . . AB 49 185.681 195.055 277.596 1 84.44 ? N1A NDP 401 J 1 HETATM 20 C C2A NDP . . . AB 49 186.907 194.519 277.697 1 84.44 ? C2A NDP 401 J 1 HETATM 21 N N3A NDP . . . AB 49 187.95 195.183 278.218 1 84.44 ? N3A NDP 401 J 1 HETATM 22 C C4A NDP . . . AB 49 187.819 196.453 278.675 1 84.44 ? C4A NDP 401 J 1 HETATM 23 O O3 NDP . . . AB 49 194.187 202.506 279.116 1 84.44 ? O3 NDP 401 J 1 HETATM 24 P PN NDP . . . AB 49 195.124 203.012 280.3 1 84.44 ? PN NDP 401 J 1 HETATM 25 O O1N NDP . . . AB 49 195.035 201.98 281.379 1 84.44 ? O1N NDP 401 J 1 HETATM 26 O O2N NDP . . . AB 49 196.448 203.379 279.703 1 84.44 ? O2N NDP 401 J 1 HETATM 27 O O5D NDP . . . AB 49 194.436 204.343 280.86 1 84.44 ? O5D NDP 401 J 1 HETATM 28 C C5D NDP . . . AB 49 193.658 204.299 282.054 1 84.44 ? C5D NDP 401 J 1 HETATM 29 C C4D NDP . . . AB 49 192.415 205.172 281.918 1 84.44 ? C4D NDP 401 J 1 HETATM 30 O O4D NDP . . . AB 49 192.732 206.515 282.27 1 84.44 ? O4D NDP 401 J 1 HETATM 31 C C3D NDP . . . AB 49 191.903 205.185 280.491 1 84.44 ? C3D NDP 401 J 1 HETATM 32 O O3D NDP . . . AB 49 190.515 204.829 280.49 1 84.44 ? O3D NDP 401 J 1 HETATM 33 C C2D NDP . . . AB 49 192.18 206.588 279.976 1 84.44 ? C2D NDP 401 J 1 HETATM 34 O O2D NDP . . . AB 49 191.077 207.16 279.268 1 84.44 ? O2D NDP 401 J 1 HETATM 35 C C1D NDP . . . AB 49 192.475 207.422 281.204 1 84.44 ? C1D NDP 401 J 1 HETATM 36 N N1N NDP . . . AB 49 193.641 208.271 280.973 1 84.44 ? N1N NDP 401 J 1 HETATM 37 C C2N NDP . . . AB 49 194.725 207.783 280.374 1 84.44 ? C2N NDP 401 J 1 HETATM 38 C C3N NDP . . . AB 49 195.845 208.565 280.142 1 84.44 ? C3N NDP 401 J 1 HETATM 39 C C7N NDP . . . AB 49 197.045 207.977 279.473 1 84.44 ? C7N NDP 401 J 1 HETATM 40 O O7N NDP . . . AB 49 196.989 206.853 279.016 1 84.44 ? O7N NDP 401 J 1 HETATM 41 N N7N NDP . . . AB 49 198.156 208.7 279.398 1 84.44 ? N7N NDP 401 J 1 HETATM 42 C C4N NDP . . . AB 49 195.893 210.006 280.557 1 84.44 ? C4N NDP 401 J 1 HETATM 43 C C5N NDP . . . AB 49 194.655 210.407 281.195 1 84.44 ? C5N NDP 401 J 1 HETATM 44 C C6N NDP . . . AB 49 193.595 209.535 281.375 1 84.44 ? C6N NDP 401 J 1 HETATM 45 P P2B NDP . . . AB 49 191.221 194.483 278.257 1 84.44 ? P2B NDP 401 J 1 HETATM 46 O O1X NDP . . . AB 49 192.519 194.022 277.66 1 84.44 ? O1X NDP 401 J 1 HETATM 47 O O2X NDP . . . AB 49 191.283 194.736 279.737 1 84.44 ? O2X NDP 401 J 1 HETATM 48 O O3X NDP . . . AB 49 190.018 193.702 277.804 1 84.44 ? O3X NDP 401 J 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 486 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #