data_5XTD # _model_server_result.job_id Y2kd-Mon4zuM5dHgp8kYsQ _model_server_result.datetime_utc '2024-11-23 03:41:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PB","auth_seq_id":701}' # _entry.id 5XTD # _exptl.entry_id 5XTD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.073 _entity.id 52 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 45-meric _pdbx_struct_assembly.oligomeric_count 45 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 52 HB N N ? 52 JB N N ? 52 PB N N ? 52 QB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 T SG CYS 94 V CYS 95 1_555 T SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 AA SG CYS 111 c CYS 144 1_555 JA SG CYS 279 l CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 BA SG CYS 149 d CYS 149 1_555 CA SG CYS 88 e CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 FA SG CYS 32 h CYS 33 1_555 FA SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 FA SG CYS 42 h CYS 43 1_555 FA SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 QA SG CYS 75 u CYS 78 1_555 QA SG CYS 107 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 RA SG CYS 69 v CYS 69 1_555 RA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc1 A NE2 GLN 355 A GLN 381 1_555 TA FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc2 B N CYS 80 B CYS 114 1_555 VA FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc3 B N GLY 120 B GLY 154 1_555 WA FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc4 C SG CYS 32 C CYS 89 1_555 YA FE2 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 L NE2 HIS 95 M HIS 124 1_555 BB FE3 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 L SG CYS 108 M CYS 137 1_555 BB FE4 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? covale ? covale1 L SG CYS 147 M CYS 176 1_555 CB S3 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc7 L SG CYS 147 M CYS 176 1_555 CB FE1 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc8 L O CYS 150 M CYS 179 1_555 CB FE1 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc9 N SG CYS 141 O CYS 176 1_555 EB FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc10 N SG CYS 145 O CYS 180 1_555 EB FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'C41 H83 N O8 P 1' _chem_comp.formula_weight 749.073 _chem_comp.id PEE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 5XTD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code TA 45 SF4 A 1 501 501 SF4 SF4 . UA 46 FMN A 1 502 502 FMN FMN . VA 45 SF4 B 1 301 301 SF4 SF4 . WA 45 SF4 B 1 302 302 SF4 SF4 . XA 47 PLX B 1 303 401 PLX PLX . YA 45 SF4 C 1 301 301 SF4 SF4 . ZA 48 8Q1 E 1 201 201 8Q1 8Q1 . AB 49 NDP J 1 401 401 NDP NDP . BB 45 SF4 M 1 801 801 SF4 SF4 . CB 45 SF4 M 1 802 802 SF4 SF4 . DB 50 FES M 1 803 803 FES FES . EB 50 FES O 1 301 301 FES FES . FB 47 PLX U 1 101 101 PLX PLX . GB 51 CDL V 1 201 201 CDL CDL . HB 52 PEE V 1 202 202 PEE PEE . IB 47 PLX V 1 203 203 PLX PLX . JB 52 PEE W 1 201 201 PEE PEE . KB 47 PLX b 1 201 201 PLX PLX . LB 47 PLX g 1 201 201 PLX PLX . MB 47 PLX g 1 202 202 PLX PLX . NB 47 PLX g 1 203 203 PLX PLX . OB 51 CDL i 1 401 401 CDL CDL . PB 52 PEE l 1 701 701 PEE PEE . QB 52 PEE l 1 702 702 PEE PEE . RB 51 CDL l 1 703 703 CDL CDL . SB 51 CDL l 1 704 704 CDL CDL . TB 51 CDL n 1 101 101 CDL CDL . UB 48 8Q1 p 1 201 201 8Q1 8Q1 . VB 47 PLX r 1 501 501 PLX PLX . WB 47 PLX r 1 502 502 PLX PLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEE . . . PB 52 274.106 228.861 255.565 1 20 ? C2 PEE 701 l 1 HETATM 2 C C1 PEE . . . PB 52 273.363 229.512 256.735 1 20 ? C1 PEE 701 l 1 HETATM 3 N N PEE . . . PB 52 276.756 227.829 261.805 1 20 ? N PEE 701 l 1 HETATM 4 C C3 PEE . . . PB 52 273.2 228.64 254.324 1 20 ? C3 PEE 701 l 1 HETATM 5 C C4 PEE . . . PB 52 274.702 228.069 260.51 1 20 ? C4 PEE 701 l 1 HETATM 6 C C5 PEE . . . PB 52 275.493 227.217 261.508 1 20 ? C5 PEE 701 l 1 HETATM 7 C C10 PEE . . . PB 52 275.756 229.399 253.907 1 20 ? C10 PEE 701 l 1 HETATM 8 C C11 PEE . . . PB 52 275.542 230.331 252.697 1 20 ? C11 PEE 701 l 1 HETATM 9 C C12 PEE . . . PB 52 276.835 230.53 251.859 1 20 ? C12 PEE 701 l 1 HETATM 10 C C13 PEE . . . PB 52 277.098 229.347 250.914 1 20 ? C13 PEE 701 l 1 HETATM 11 C C14 PEE . . . PB 52 276.221 229.417 249.629 1 20 ? C14 PEE 701 l 1 HETATM 12 C C15 PEE . . . PB 52 276.61 230.619 248.736 1 20 ? C15 PEE 701 l 1 HETATM 13 C C16 PEE . . . PB 52 276.807 230.201 247.26 1 20 ? C16 PEE 701 l 1 HETATM 14 C C17 PEE . . . PB 52 277.177 231.403 246.369 1 20 ? C17 PEE 701 l 1 HETATM 15 C C18 PEE . . . PB 52 275.973 231.879 245.536 1 20 ? C18 PEE 701 l 1 HETATM 16 C C19 PEE . . . PB 52 275.192 230.686 244.925 1 20 ? C19 PEE 701 l 1 HETATM 17 C C20 PEE . . . PB 52 274.859 230.932 243.431 1 20 ? C20 PEE 701 l 1 HETATM 18 C C21 PEE . . . PB 52 275.552 232.195 242.888 1 20 ? C21 PEE 701 l 1 HETATM 19 C C22 PEE . . . PB 52 275.588 232.241 241.347 1 20 ? C22 PEE 701 l 1 HETATM 20 C C23 PEE . . . PB 52 277.004 232.489 240.802 1 20 ? C23 PEE 701 l 1 HETATM 21 C C24 PEE . . . PB 52 277.169 233.904 240.2 1 20 ? C24 PEE 701 l 1 HETATM 22 C C25 PEE . . . PB 52 277.339 233.877 238.66 1 20 ? C25 PEE 701 l 1 HETATM 23 C C26 PEE . . . PB 52 276.009 234.064 237.923 1 20 ? C26 PEE 701 l 1 HETATM 24 C C27 PEE . . . PB 52 275.882 233.157 236.704 1 20 ? C27 PEE 701 l 1 HETATM 25 C C30 PEE . . . PB 52 272.892 226.952 252.589 1 20 ? C30 PEE 701 l 1 HETATM 26 C C31 PEE . . . PB 52 273.423 225.8 251.7 1 20 ? C31 PEE 701 l 1 HETATM 27 C C32 PEE . . . PB 52 272.787 225.84 250.288 1 20 ? C32 PEE 701 l 1 HETATM 28 C C33 PEE . . . PB 52 272.581 227.299 249.782 1 20 ? C33 PEE 701 l 1 HETATM 29 C C34 PEE . . . PB 52 272.769 227.413 248.269 1 20 ? C34 PEE 701 l 1 HETATM 30 C C35 PEE . . . PB 52 273.34 226.128 247.664 1 20 ? C35 PEE 701 l 1 HETATM 31 C C36 PEE . . . PB 52 272.975 225.994 246.163 1 20 ? C36 PEE 701 l 1 HETATM 32 C C37 PEE . . . PB 52 272.881 227.394 245.47 1 20 ? C37 PEE 701 l 1 HETATM 33 C C38 PEE . . . PB 52 272.972 227.279 243.917 1 20 ? C38 PEE 701 l 1 HETATM 34 C C39 PEE . . . PB 52 271.566 227.17 243.262 1 20 ? C39 PEE 701 l 1 HETATM 35 C C40 PEE . . . PB 52 271.239 228.421 242.401 1 20 ? C40 PEE 701 l 1 HETATM 36 C C41 PEE . . . PB 52 269.78 228.423 241.942 1 20 ? C41 PEE 701 l 1 HETATM 37 C C42 PEE . . . PB 52 269.185 227.008 241.909 1 20 ? C42 PEE 701 l 1 HETATM 38 C C43 PEE . . . PB 52 268.374 226.775 240.65 1 20 ? C43 PEE 701 l 1 HETATM 39 C C44 PEE . . . PB 52 267.012 226.184 240.949 1 20 ? C44 PEE 701 l 1 HETATM 40 C C45 PEE . . . PB 52 265.9 227.185 240.767 1 20 ? C45 PEE 701 l 1 HETATM 41 O O4 PEE . . . PB 52 276.412 228.38 253.785 1 20 ? O4 PEE 701 l 1 HETATM 42 O O5 PEE . . . PB 52 271.731 227.318 252.486 1 20 ? O5 PEE 701 l 1 HETATM 43 O O2 PEE . . . PB 52 275.181 229.726 255.177 1 20 ? O2 PEE 701 l 1 HETATM 44 O O3 PEE . . . PB 52 273.789 227.581 253.538 1 20 ? O3 PEE 701 l 1 HETATM 45 O O1P PEE . . . PB 52 271.693 227.647 258.411 1 20 ? O1P PEE 701 l 1 HETATM 46 O O2P PEE . . . PB 52 273.643 226.423 257.542 1 20 ? O2P PEE 701 l 1 HETATM 47 O O3P PEE . . . PB 52 273.832 228.932 257.949 1 20 ? O3P PEE 701 l 1 HETATM 48 O O4P PEE . . . PB 52 273.676 227.256 259.941 1 20 ? O4P PEE 701 l 1 HETATM 49 P P PEE . . . PB 52 273.196 227.55 258.445 1 20 ? P PEE 701 l 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 91 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 49 #