data_5XTE
#
_model_server_result.job_id            slkb5cgYGESBmd_6Y3sYNA 
_model_server_result.datetime_utc      '2024-11-30 05:21:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xte 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MA","auth_seq_id":101}' 
#
_entry.id    5XTE 
#
_exptl.entry_id    5XTE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          17 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XTE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XTE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 17 HA N N 
? 17 MA N N 
? 17 NA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 144 C CYS 222 1_555 C SG CYS 160 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 N SG CYS 144 P CYS 222 1_555 N SG CYS 160 P CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 C ND1 HIS 141 C HIS 219 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc2 C ND1 HIS 161 C HIS 239 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc3 H NE2 HIS 41 H HIS 125 1_555 AA FE HEC . H HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc4 I NE2 HIS 82 J HIS 83 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc5 I NE2 HIS 96 J HIS 97 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc6 I NE2 HIS 181 J HIS 182 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc7 I NE2 HIS 195 J HIS 196 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc8 N ND1 HIS 161 P HIS 239 1_555 LA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc9 S NE2 HIS 41 U HIS 125 1_555 PA FE HEC . U HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc10 T NE2 HIS 82 V HIS 83 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc11 T NE2 HIS 96 V HIS 97 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc12 T NE2 HIS 181 V HIS 182 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc13 T NE2 HIS 195 V HIS 196 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XTE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 12 CDL A 1 101 101 CDL CDL . 
X 13 FES C 1 301 301 FES FES . 
Y 12 CDL G 1 101 101 CDL CDL . 
Z 14 PEE H 1 401 302 PEE PEE . 
AA 15 HEC H 1 402 401 HEC HEC . 
BA 12 CDL H 1 403 402 CDL CDL . 
CA 16 HEM J 1 401 401 HEM HEM . 
DA 16 HEM J 1 402 402 HEM HEM . 
EA 14 PEE J 1 403 403 PEE PEE . 
FA 12 CDL J 1 404 404 CDL CDL . 
GA 12 CDL J 1 405 102 CDL CDL . 
HA 17 PLX L 1 501 501 PLX PLX . 
IA 12 CDL L 1 502 502 CDL CDL . 
JA 14 PEE L 1 503 503 PEE PEE . 
KA 12 CDL N 1 101 101 CDL CDL . 
LA 13 FES P 1 301 301 FES FES . 
MA 17 PLX Q 1 101 101 PLX PLX . 
NA 17 PLX T 1 101 101 PLX PLX . 
OA 14 PEE U 1 401 302 PEE PEE . 
PA 15 HEC U 1 402 401 HEC HEC . 
QA 12 CDL U 1 403 402 CDL CDL . 
RA 16 HEM V 1 401 401 HEM HEM . 
SA 16 HEM V 1 402 402 HEM HEM . 
TA 14 PEE V 1 403 403 PEE PEE . 
UA 12 CDL Y 1 501 501 CDL CDL . 
VA 14 PEE Y 1 502 502 PEE PEE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . MA 17 208.857 300.595 242.617 1 40.69 ? C23 PLX 101 Q 1 
HETATM 2 C C22 PLX . . . MA 17 209.347 299.67 243.745 1 41.04 ? C22 PLX 101 Q 1 
HETATM 3 C C21 PLX . . . MA 17 208.254 299.41 244.81 1 40.14 ? C21 PLX 101 Q 1 
HETATM 4 C C20 PLX . . . MA 17 207.114 298.497 244.28 1 40.19 ? C20 PLX 101 Q 1 
HETATM 5 C C19 PLX . . . MA 17 205.761 299.242 244.156 1 37.39 ? C19 PLX 101 Q 1 
HETATM 6 C C18 PLX . . . MA 17 204.847 299.065 245.395 1 33.56 ? C18 PLX 101 Q 1 
HETATM 7 C C17 PLX . . . MA 17 203.456 299.687 245.172 1 31.18 ? C17 PLX 101 Q 1 
HETATM 8 C C16 PLX . . . MA 17 202.487 299.44 246.348 1 31.66 ? C16 PLX 101 Q 1 
HETATM 9 C C15 PLX . . . MA 17 201.867 300.747 246.872 1 33.01 ? C15 PLX 101 Q 1 
HETATM 10 C C14 PLX . . . MA 17 200.403 300.568 247.31 1 32.58 ? C14 PLX 101 Q 1 
HETATM 11 C C13 PLX . . . MA 17 200.259 300.308 248.825 1 31.76 ? C13 PLX 101 Q 1 
HETATM 12 C C12 PLX . . . MA 17 199.836 298.862 249.144 1 32.14 ? C12 PLX 101 Q 1 
HETATM 13 C C11 PLX . . . MA 17 199.557 298.662 250.648 1 32.89 ? C11 PLX 101 Q 1 
HETATM 14 C C10 PLX . . . MA 17 198.055 298.464 250.952 1 33.8 ? C10 PLX 101 Q 1 
HETATM 15 C C9 PLX . . . MA 17 197.819 297.389 252.039 1 35.24 ? C9 PLX 101 Q 1 
HETATM 16 C C8 PLX . . . MA 17 198.094 295.961 251.513 1 36.45 ? C8 PLX 101 Q 1 
HETATM 17 C C7 PLX . . . MA 17 197.009 294.956 251.954 1 37.52 ? C7 PLX 101 Q 1 
HETATM 18 C C6 PLX . . . MA 17 197.359 294.27 253.276 1 36.56 ? C6 PLX 101 Q 1 
HETATM 19 O O7 PLX . . . MA 17 197.251 295.188 254.324 1 37.4 ? O7 PLX 101 Q 1 
HETATM 20 O O6 PLX . . . MA 17 196.475 293.186 253.493 1 33.47 ? O6 PLX 101 Q 1 
HETATM 21 C C4 PLX . . . MA 17 196.563 292.631 254.783 1 30.66 ? C4 PLX 101 Q 1 
HETATM 22 C C3 PLX . . . MA 17 195.313 292.982 255.568 1 27.81 ? C3 PLX 101 Q 1 
HETATM 23 O O4 PLX . . . MA 17 195.682 293.137 256.941 1 22.36 ? O4 PLX 101 Q 1 
HETATM 24 P P1 PLX . . . MA 17 194.664 293.875 257.929 1 19.23 ? P1 PLX 101 Q 1 
HETATM 25 O O1 PLX . . . MA 17 193.746 292.79 258.67 1 14.54 ? O1 PLX 101 Q 1 
HETATM 26 C C2 PLX . . . MA 17 192.867 291.991 257.868 1 9.09 ? C2 PLX 101 Q 1 
HETATM 27 C C1 PLX . . . MA 17 192.21 290.889 258.743 1 2.37 ? C1 PLX 101 Q 1 
HETATM 28 N N1 PLX . . . MA 17 191.82 289.756 257.875 1 2.22 ? N1 PLX 101 Q 1 
HETATM 29 C C1C PLX . . . MA 17 192.78 289.285 256.882 1 2 ? C1C PLX 101 Q 1 
HETATM 30 C C1B PLX . . . MA 17 191.523 288.634 258.746 1 2.26 ? C1B PLX 101 Q 1 
HETATM 31 C C1A PLX . . . MA 17 190.64 290.175 257.141 1 2 ? C1A PLX 101 Q 1 
HETATM 32 O O2 PLX . . . MA 17 193.785 294.818 257.132 1 19.56 ? O2 PLX 101 Q 1 
HETATM 33 C C5 PLX . . . MA 17 196.686 291.117 254.683 1 33.4 ? C5 PLX 101 Q 1 
HETATM 34 O O8 PLX . . . MA 17 196.964 290.779 253.31 1 37.15 ? O8 PLX 101 Q 1 
HETATM 35 C C24 PLX . . . MA 17 196.059 289.86 252.735 1 38.76 ? C24 PLX 101 Q 1 
HETATM 36 O O9 PLX . . . MA 17 195.128 289.438 253.69 1 38.8 ? O9 PLX 101 Q 1 
HETATM 37 C C25 PLX . . . MA 17 196.832 288.65 252.213 1 38.96 ? C25 PLX 101 Q 1 
HETATM 38 C C26 PLX . . . MA 17 197.074 288.733 250.694 1 38.45 ? C26 PLX 101 Q 1 
HETATM 39 C C27 PLX . . . MA 17 195.756 288.934 249.914 1 37.88 ? C27 PLX 101 Q 1 
HETATM 40 C C28 PLX . . . MA 17 195.99 289.275 248.424 1 37.56 ? C28 PLX 101 Q 1 
HETATM 41 C C29 PLX . . . MA 17 197.074 288.397 247.775 1 40.01 ? C29 PLX 101 Q 1 
HETATM 42 C C30 PLX . . . MA 17 197.178 288.646 246.26 1 42.17 ? C30 PLX 101 Q 1 
HETATM 43 C C31 PLX . . . MA 17 198.444 288.035 245.643 1 43.78 ? C31 PLX 101 Q 1 
HETATM 44 C C32 PLX . . . MA 17 199.738 288.682 246.17 1 45.48 ? C32 PLX 101 Q 1 
HETATM 45 C C33 PLX . . . MA 17 200.946 287.746 246.034 1 46.77 ? C33 PLX 101 Q 1 
HETATM 46 C C34 PLX . . . MA 17 202.227 288.48 245.583 1 48 ? C34 PLX 101 Q 1 
HETATM 47 C C35 PLX . . . MA 17 203.496 287.703 245.939 1 46.66 ? C35 PLX 101 Q 1 
HETATM 48 C C36 PLX . . . MA 17 204.757 288.31 245.301 1 44.97 ? C36 PLX 101 Q 1 
HETATM 49 C C37 PLX . . . MA 17 205.298 287.484 244.129 1 42.83 ? C37 PLX 101 Q 1 
HETATM 50 C C38 PLX . . . MA 17 204.514 287.698 242.832 1 40.79 ? C38 PLX 101 Q 1 
HETATM 51 C C39 PLX . . . MA 17 203.59 286.521 242.504 1 38.57 ? C39 PLX 101 Q 1 
HETATM 52 O O3 PLX . . . MA 17 195.45 294.667 258.95 1 15.39 ? O3 PLX 101 Q 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           52 
#