data_5XTE
#
_model_server_result.job_id            HxSuggmoDUgW1yGBDF20ow 
_model_server_result.datetime_utc      '2025-02-18 16:04:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xte 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":101}' 
#
_entry.id    5XTE 
#
_exptl.entry_id    5XTE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XTE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XTE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 W N N 
? 12 Y N N 
? 12 BA N N 
? 12 FA N N 
? 12 GA N N 
? 12 IA N N 
? 12 KA N N 
? 12 QA N N 
? 12 UA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 144 C CYS 222 1_555 C SG CYS 160 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 N SG CYS 144 P CYS 222 1_555 N SG CYS 160 P CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 C ND1 HIS 141 C HIS 219 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc2 C ND1 HIS 161 C HIS 239 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc3 H NE2 HIS 41 H HIS 125 1_555 AA FE HEC . H HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc4 I NE2 HIS 82 J HIS 83 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc5 I NE2 HIS 96 J HIS 97 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc6 I NE2 HIS 181 J HIS 182 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc7 I NE2 HIS 195 J HIS 196 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc8 N ND1 HIS 161 P HIS 239 1_555 LA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc9 S NE2 HIS 41 U HIS 125 1_555 PA FE HEC . U HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc10 T NE2 HIS 82 V HIS 83 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc11 T NE2 HIS 96 V HIS 97 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc12 T NE2 HIS 181 V HIS 182 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc13 T NE2 HIS 195 V HIS 196 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     5XTE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 12 CDL A 1 101 101 CDL CDL . 
X 13 FES C 1 301 301 FES FES . 
Y 12 CDL G 1 101 101 CDL CDL . 
Z 14 PEE H 1 401 302 PEE PEE . 
AA 15 HEC H 1 402 401 HEC HEC . 
BA 12 CDL H 1 403 402 CDL CDL . 
CA 16 HEM J 1 401 401 HEM HEM . 
DA 16 HEM J 1 402 402 HEM HEM . 
EA 14 PEE J 1 403 403 PEE PEE . 
FA 12 CDL J 1 404 404 CDL CDL . 
GA 12 CDL J 1 405 102 CDL CDL . 
HA 17 PLX L 1 501 501 PLX PLX . 
IA 12 CDL L 1 502 502 CDL CDL . 
JA 14 PEE L 1 503 503 PEE PEE . 
KA 12 CDL N 1 101 101 CDL CDL . 
LA 13 FES P 1 301 301 FES FES . 
MA 17 PLX Q 1 101 101 PLX PLX . 
NA 17 PLX T 1 101 101 PLX PLX . 
OA 14 PEE U 1 401 302 PEE PEE . 
PA 15 HEC U 1 402 401 HEC HEC . 
QA 12 CDL U 1 403 402 CDL CDL . 
RA 16 HEM V 1 401 401 HEM HEM . 
SA 16 HEM V 1 402 402 HEM HEM . 
TA 14 PEE V 1 403 403 PEE PEE . 
UA 12 CDL Y 1 501 501 CDL CDL . 
VA 14 PEE Y 1 502 502 PEE PEE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . Y 12 253.468 306.658 228.761 1 37.07 ? C1 CDL 101 G 1 
HETATM 2 O O1 CDL . . . Y 12 254.373 306.583 229.867 1 39.14 ? O1 CDL 101 G 1 
HETATM 3 C CA2 CDL . . . Y 12 253.046 305.248 228.367 1 37.45 ? CA2 CDL 101 G 1 
HETATM 4 O OA2 CDL . . . Y 12 252.094 304.74 229.306 1 36.16 ? OA2 CDL 101 G 1 
HETATM 5 P PA1 CDL . . . Y 12 252.454 303.532 230.315 1 34.56 ? PA1 CDL 101 G 1 
HETATM 6 O OA3 CDL . . . Y 12 251.999 302.238 229.689 1 31.56 ? OA3 CDL 101 G 1 
HETATM 7 O OA4 CDL . . . Y 12 253.883 303.683 230.777 1 38.3 ? OA4 CDL 101 G 1 
HETATM 8 O OA5 CDL . . . Y 12 251.514 303.831 231.583 1 37.73 ? OA5 CDL 101 G 1 
HETATM 9 C CA3 CDL . . . Y 12 251.533 305.117 232.189 1 41.26 ? CA3 CDL 101 G 1 
HETATM 10 C CA4 CDL . . . Y 12 250.109 305.457 232.594 1 45.08 ? CA4 CDL 101 G 1 
HETATM 11 O OA6 CDL . . . Y 12 249.806 304.699 233.765 1 44.32 ? OA6 CDL 101 G 1 
HETATM 12 C CA5 CDL . . . Y 12 249.696 305.482 234.99 1 42.64 ? CA5 CDL 101 G 1 
HETATM 13 O OA7 CDL . . . Y 12 249.889 306.689 234.989 1 44.4 ? OA7 CDL 101 G 1 
HETATM 14 C C11 CDL . . . Y 12 249.333 304.787 236.276 1 37.26 ? C11 CDL 101 G 1 
HETATM 15 C C12 CDL . . . Y 12 248.52 305.755 237.126 1 32.35 ? C12 CDL 101 G 1 
HETATM 16 C C13 CDL . . . Y 12 248.814 305.577 238.609 1 27.77 ? C13 CDL 101 G 1 
HETATM 17 C C14 CDL . . . Y 12 248.723 306.914 239.33 1 24.59 ? C14 CDL 101 G 1 
HETATM 18 C C15 CDL . . . Y 12 248.591 306.722 240.835 1 24.18 ? C15 CDL 101 G 1 
HETATM 19 C C16 CDL . . . Y 12 247.209 306.185 241.189 1 22.69 ? C16 CDL 101 G 1 
HETATM 20 C C17 CDL . . . Y 12 246.437 307.164 242.065 1 20.05 ? C17 CDL 101 G 1 
HETATM 21 C C18 CDL . . . Y 12 244.933 307.026 241.851 1 18.52 ? C18 CDL 101 G 1 
HETATM 22 C CA6 CDL . . . Y 12 249.112 305.101 231.49 1 48.35 ? CA6 CDL 101 G 1 
HETATM 23 O OA8 CDL . . . Y 12 249.714 304.992 230.195 1 51.7 ? OA8 CDL 101 G 1 
HETATM 24 C CA7 CDL . . . Y 12 249.365 305.913 229.128 1 52.61 ? CA7 CDL 101 G 1 
HETATM 25 O OA9 CDL . . . Y 12 249.026 305.461 228.05 1 54.89 ? OA9 CDL 101 G 1 
HETATM 26 C C31 CDL . . . Y 12 249.436 307.404 229.364 1 49.84 ? C31 CDL 101 G 1 
HETATM 27 C C32 CDL . . . Y 12 248.066 307.991 229.69 1 46.54 ? C32 CDL 101 G 1 
HETATM 28 C C33 CDL . . . Y 12 247.273 307.117 230.651 1 45.63 ? C33 CDL 101 G 1 
HETATM 29 C C34 CDL . . . Y 12 247.367 307.638 232.075 1 43.93 ? C34 CDL 101 G 1 
HETATM 30 C C35 CDL . . . Y 12 246.612 308.949 232.223 1 43.56 ? C35 CDL 101 G 1 
HETATM 31 C C36 CDL . . . Y 12 245.375 308.783 233.096 1 42.83 ? C36 CDL 101 G 1 
HETATM 32 C C37 CDL . . . Y 12 245.659 307.952 234.34 1 42.27 ? C37 CDL 101 G 1 
HETATM 33 C C38 CDL . . . Y 12 244.452 307.913 235.267 1 39.62 ? C38 CDL 101 G 1 
HETATM 34 C CB2 CDL . . . Y 12 254.161 307.354 227.594 1 36.23 ? CB2 CDL 101 G 1 
HETATM 35 O OB2 CDL . . . Y 12 255.521 307.632 227.935 1 34.79 ? OB2 CDL 101 G 1 
HETATM 36 P PB2 CDL . . . Y 12 256.194 309.076 227.677 1 34.16 ? PB2 CDL 101 G 1 
HETATM 37 O OB3 CDL . . . Y 12 257.58 308.856 227.122 1 32.64 ? OB3 CDL 101 G 1 
HETATM 38 O OB4 CDL . . . Y 12 255.211 309.935 226.915 1 35.07 ? OB4 CDL 101 G 1 
HETATM 39 O OB5 CDL . . . Y 12 256.351 309.672 229.168 1 35.81 ? OB5 CDL 101 G 1 
HETATM 40 C CB3 CDL . . . Y 12 256.952 310.948 229.393 1 38.26 ? CB3 CDL 101 G 1 
HETATM 41 C CB4 CDL . . . Y 12 256.105 311.784 230.348 1 38.95 ? CB4 CDL 101 G 1 
HETATM 42 O OB6 CDL . . . Y 12 256.435 311.464 231.695 1 41.3 ? OB6 CDL 101 G 1 
HETATM 43 C CB5 CDL . . . Y 12 256.059 312.547 232.585 1 40.86 ? CB5 CDL 101 G 1 
HETATM 44 O OB7 CDL . . . Y 12 256.393 313.682 232.3 1 39.95 ? OB7 CDL 101 G 1 
HETATM 45 C C51 CDL . . . Y 12 255.264 312.27 233.837 1 40.95 ? C51 CDL 101 G 1 
HETATM 46 C C52 CDL . . . Y 12 254.333 311.083 233.618 1 42.25 ? C52 CDL 101 G 1 
HETATM 47 C C53 CDL . . . Y 12 253.209 311.079 234.641 1 41.58 ? C53 CDL 101 G 1 
HETATM 48 C C54 CDL . . . Y 12 252.544 312.442 234.695 1 39.46 ? C54 CDL 101 G 1 
HETATM 49 C C55 CDL . . . Y 12 253.099 313.258 235.851 1 38.28 ? C55 CDL 101 G 1 
HETATM 50 C C56 CDL . . . Y 12 252.935 312.505 237.16 1 38.53 ? C56 CDL 101 G 1 
HETATM 51 C C57 CDL . . . Y 12 253.103 313.445 238.342 1 38.05 ? C57 CDL 101 G 1 
HETATM 52 C C58 CDL . . . Y 12 251.859 314.302 238.529 1 37.45 ? C58 CDL 101 G 1 
HETATM 53 C CB6 CDL . . . Y 12 254.621 311.519 230.121 1 37.78 ? CB6 CDL 101 G 1 
HETATM 54 O OB8 CDL . . . Y 12 254.189 310.474 230.989 1 37.26 ? OB8 CDL 101 G 1 
HETATM 55 C CB7 CDL . . . Y 12 252.778 310.132 231.077 1 39.69 ? CB7 CDL 101 G 1 
HETATM 56 O OB9 CDL . . . Y 12 252.077 310.221 230.086 1 40.27 ? OB9 CDL 101 G 1 
HETATM 57 C C71 CDL . . . Y 12 252.184 309.667 232.38 1 39.75 ? C71 CDL 101 G 1 
HETATM 58 C C72 CDL . . . Y 12 250.694 309.984 232.403 1 40.74 ? C72 CDL 101 G 1 
HETATM 59 C C73 CDL . . . Y 12 250.386 311.05 233.448 1 41.8 ? C73 CDL 101 G 1 
HETATM 60 C C74 CDL . . . Y 12 248.966 310.919 233.982 1 42.12 ? C74 CDL 101 G 1 
HETATM 61 C C75 CDL . . . Y 12 248.969 310.248 235.348 1 42.16 ? C75 CDL 101 G 1 
HETATM 62 C C76 CDL . . . Y 12 248.212 311.087 236.365 1 40.15 ? C76 CDL 101 G 1 
HETATM 63 C C77 CDL . . . Y 12 248.863 310.988 237.739 1 39.63 ? C77 CDL 101 G 1 
HETATM 64 C C78 CDL . . . Y 12 247.971 310.236 238.718 1 38.95 ? C78 CDL 101 G 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    206 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           64 
#