data_5XTE
#
_model_server_result.job_id            UZmeFYm2ytZwCJg-E--oZQ 
_model_server_result.datetime_utc      '2024-11-26 21:36:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xte 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"RA","auth_seq_id":401}' 
#
_entry.id    5XTE 
#
_exptl.entry_id    5XTE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XTE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XTE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 CA N N 
? 16 DA N N 
? 16 RA N N 
? 16 SA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 144 C CYS 222 1_555 C SG CYS 160 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 N SG CYS 144 P CYS 222 1_555 N SG CYS 160 P CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 C ND1 HIS 141 C HIS 219 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc2 C ND1 HIS 161 C HIS 239 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc3 H NE2 HIS 41 H HIS 125 1_555 AA FE HEC . H HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc4 I NE2 HIS 82 J HIS 83 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc5 I NE2 HIS 96 J HIS 97 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc6 I NE2 HIS 181 J HIS 182 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc7 I NE2 HIS 195 J HIS 196 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc8 N ND1 HIS 161 P HIS 239 1_555 LA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc9 S NE2 HIS 41 U HIS 125 1_555 PA FE HEC . U HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc10 T NE2 HIS 82 V HIS 83 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc11 T NE2 HIS 96 V HIS 97 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc12 T NE2 HIS 181 V HIS 182 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc13 T NE2 HIS 195 V HIS 196 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
_atom_sites.entry_id                     5XTE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 12 CDL A 1 101 101 CDL CDL . 
X 13 FES C 1 301 301 FES FES . 
Y 12 CDL G 1 101 101 CDL CDL . 
Z 14 PEE H 1 401 302 PEE PEE . 
AA 15 HEC H 1 402 401 HEC HEC . 
BA 12 CDL H 1 403 402 CDL CDL . 
CA 16 HEM J 1 401 401 HEM HEM . 
DA 16 HEM J 1 402 402 HEM HEM . 
EA 14 PEE J 1 403 403 PEE PEE . 
FA 12 CDL J 1 404 404 CDL CDL . 
GA 12 CDL J 1 405 102 CDL CDL . 
HA 17 PLX L 1 501 501 PLX PLX . 
IA 12 CDL L 1 502 502 CDL CDL . 
JA 14 PEE L 1 503 503 PEE PEE . 
KA 12 CDL N 1 101 101 CDL CDL . 
LA 13 FES P 1 301 301 FES FES . 
MA 17 PLX Q 1 101 101 PLX PLX . 
NA 17 PLX T 1 101 101 PLX PLX . 
OA 14 PEE U 1 401 302 PEE PEE . 
PA 15 HEC U 1 402 401 HEC HEC . 
QA 12 CDL U 1 403 402 CDL CDL . 
RA 16 HEM V 1 401 401 HEM HEM . 
SA 16 HEM V 1 402 402 HEM HEM . 
TA 14 PEE V 1 403 403 PEE PEE . 
UA 12 CDL Y 1 501 501 CDL CDL . 
VA 14 PEE Y 1 502 502 PEE PEE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . RA 16 219.71 306.671 230.1 1 10.73 ? CHA HEM 401 V 1 
HETATM 2 C CHB HEM . . . RA 16 219.61 308.287 234.659 1 3.22 ? CHB HEM 401 V 1 
HETATM 3 C CHC HEM . . . RA 16 220.778 303.869 236.218 1 2.16 ? CHC HEM 401 V 1 
HETATM 4 C CHD HEM . . . RA 16 220.599 302.148 231.698 1 4.36 ? CHD HEM 401 V 1 
HETATM 5 C C1A HEM . . . RA 16 219.633 307.504 231.186 1 11.53 ? C1A HEM 401 V 1 
HETATM 6 C C2A HEM . . . RA 16 219.483 308.942 231.148 1 7.4 ? C2A HEM 401 V 1 
HETATM 7 C C3A HEM . . . RA 16 219.453 309.381 232.405 1 6.01 ? C3A HEM 401 V 1 
HETATM 8 C C4A HEM . . . RA 16 219.591 308.243 233.285 1 4.84 ? C4A HEM 401 V 1 
HETATM 9 C CMA HEM . . . RA 16 219.302 310.85 232.849 1 2.18 ? CMA HEM 401 V 1 
HETATM 10 C CAA HEM . . . RA 16 219.354 309.828 229.891 1 5.96 ? CAA HEM 401 V 1 
HETATM 11 C CBA HEM . . . RA 16 218.128 309.397 229.09 1 7.44 ? CBA HEM 401 V 1 
HETATM 12 C CGA HEM . . . RA 16 217.538 310.554 228.333 1 10.73 ? CGA HEM 401 V 1 
HETATM 13 O O1A HEM . . . RA 16 216.883 310.304 227.29 1 4.92 ? O1A HEM 401 V 1 
HETATM 14 O O2A HEM . . . RA 16 217.721 311.721 228.763 1 9.74 ? O2A HEM 401 V 1 
HETATM 15 C C1B HEM . . . RA 16 219.911 307.236 235.49 1 5.28 ? C1B HEM 401 V 1 
HETATM 16 C C2B HEM . . . RA 16 219.981 307.28 236.935 1 2.16 ? C2B HEM 401 V 1 
HETATM 17 C C3B HEM . . . RA 16 220.307 306.048 237.367 1 5.62 ? C3B HEM 401 V 1 
HETATM 18 C C4B HEM . . . RA 16 220.452 305.204 236.201 1 2.43 ? C4B HEM 401 V 1 
HETATM 19 C CMB HEM . . . RA 16 219.712 308.559 237.757 1 6.21 ? CMB HEM 401 V 1 
HETATM 20 C CAB HEM . . . RA 16 220.521 305.512 238.806 1 2.33 ? CAB HEM 401 V 1 
HETATM 21 C CBB HEM . . . RA 16 220.468 306.255 239.919 1 2.16 ? CBB HEM 401 V 1 
HETATM 22 C C1C HEM . . . RA 16 220.771 303.009 235.143 1 2.16 ? C1C HEM 401 V 1 
HETATM 23 C C2C HEM . . . RA 16 220.893 301.57 235.207 1 2.16 ? C2C HEM 401 V 1 
HETATM 24 C C3C HEM . . . RA 16 220.842 301.086 233.976 1 3.55 ? C3C HEM 401 V 1 
HETATM 25 C C4C HEM . . . RA 16 220.691 302.204 233.065 1 6.16 ? C4C HEM 401 V 1 
HETATM 26 C CMC HEM . . . RA 16 221.051 300.713 236.479 1 2.16 ? CMC HEM 401 V 1 
HETATM 27 C CAC HEM . . . RA 16 220.942 299.58 233.653 1 2.16 ? CAC HEM 401 V 1 
HETATM 28 C CBC HEM . . . RA 16 220.765 299.103 232.42 1 7.89 ? CBC HEM 401 V 1 
HETATM 29 C C1D HEM . . . RA 16 220.432 303.214 230.854 1 4.98 ? C1D HEM 401 V 1 
HETATM 30 C C2D HEM . . . RA 16 220.567 303.143 229.421 1 2.16 ? C2D HEM 401 V 1 
HETATM 31 C C3D HEM . . . RA 16 220.293 304.561 228.923 1 8.46 ? C3D HEM 401 V 1 
HETATM 32 C C4D HEM . . . RA 16 220.017 305.334 230.109 1 6.29 ? C4D HEM 401 V 1 
HETATM 33 C CMD HEM . . . RA 16 220.922 301.899 228.584 1 6.41 ? CMD HEM 401 V 1 
HETATM 34 C CAD HEM . . . RA 16 220.3 305.082 227.473 1 6.8 ? CAD HEM 401 V 1 
HETATM 35 C CBD HEM . . . RA 16 219.193 304.425 226.667 1 6.21 ? CBD HEM 401 V 1 
HETATM 36 C CGD HEM . . . RA 16 218.246 305.512 226.243 1 4.96 ? CGD HEM 401 V 1 
HETATM 37 O O1D HEM . . . RA 16 217.33 305.241 225.429 1 3.12 ? O1D HEM 401 V 1 
HETATM 38 O O2D HEM . . . RA 16 218.414 306.66 226.726 1 3.87 ? O2D HEM 401 V 1 
HETATM 39 N NA HEM . . . RA 16 219.698 307.108 232.507 1 4.22 ? NA HEM 401 V 1 
HETATM 40 N NB HEM . . . RA 16 220.203 305.957 235.077 1 3.48 ? NB HEM 401 V 1 
HETATM 41 N NC HEM . . . RA 16 220.651 303.363 233.816 1 6.65 ? NC HEM 401 V 1 
HETATM 42 N ND HEM . . . RA 16 220.104 304.512 231.227 1 5.87 ? ND HEM 401 V 1 
HETATM 43 FE FE HEM . . . RA 16 220.077 305.224 233.195 1 3.51 ? FE HEM 401 V 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#