data_5XTE # _model_server_result.job_id YUFRO4jtUyH5i6vECFF_sw _model_server_result.datetime_utc '2024-11-14 17:36:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":401}' # _entry.id 5XTE # _exptl.entry_id 5XTE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.073 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Z N N ? 14 EA N N ? 14 JA N N ? 14 OA N N ? 14 TA N N ? 14 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 144 C CYS 222 1_555 C SG CYS 160 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 N SG CYS 144 P CYS 222 1_555 N SG CYS 160 P CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C ND1 HIS 141 C HIS 219 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 C ND1 HIS 161 C HIS 239 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 H NE2 HIS 41 H HIS 125 1_555 AA FE HEC . H HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 I NE2 HIS 82 J HIS 83 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc5 I NE2 HIS 96 J HIS 97 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc6 I NE2 HIS 181 J HIS 182 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc7 I NE2 HIS 195 J HIS 196 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc8 N ND1 HIS 161 P HIS 239 1_555 LA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 S NE2 HIS 41 U HIS 125 1_555 PA FE HEC . U HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc10 T NE2 HIS 82 V HIS 83 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 T NE2 HIS 96 V HIS 97 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc12 T NE2 HIS 181 V HIS 182 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc13 T NE2 HIS 195 V HIS 196 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'C41 H83 N O8 P 1' _chem_comp.formula_weight 749.073 _chem_comp.id PEE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 5XTE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 CDL A 1 101 101 CDL CDL . X 13 FES C 1 301 301 FES FES . Y 12 CDL G 1 101 101 CDL CDL . Z 14 PEE H 1 401 302 PEE PEE . AA 15 HEC H 1 402 401 HEC HEC . BA 12 CDL H 1 403 402 CDL CDL . CA 16 HEM J 1 401 401 HEM HEM . DA 16 HEM J 1 402 402 HEM HEM . EA 14 PEE J 1 403 403 PEE PEE . FA 12 CDL J 1 404 404 CDL CDL . GA 12 CDL J 1 405 102 CDL CDL . HA 17 PLX L 1 501 501 PLX PLX . IA 12 CDL L 1 502 502 CDL CDL . JA 14 PEE L 1 503 503 PEE PEE . KA 12 CDL N 1 101 101 CDL CDL . LA 13 FES P 1 301 301 FES FES . MA 17 PLX Q 1 101 101 PLX PLX . NA 17 PLX T 1 101 101 PLX PLX . OA 14 PEE U 1 401 302 PEE PEE . PA 15 HEC U 1 402 401 HEC HEC . QA 12 CDL U 1 403 402 CDL CDL . RA 16 HEM V 1 401 401 HEM HEM . SA 16 HEM V 1 402 402 HEM HEM . TA 14 PEE V 1 403 403 PEE PEE . UA 12 CDL Y 1 501 501 CDL CDL . VA 14 PEE Y 1 502 502 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEE . . . Z 14 254.773 292.01 231.489 1 20 ? C2 PEE 401 H 1 HETATM 2 C C1 PEE . . . Z 14 254.677 293.469 231.053 1 20 ? C1 PEE 401 H 1 HETATM 3 N N PEE . . . Z 14 257.116 297.854 230.731 1 20 ? N PEE 401 H 1 HETATM 4 C C3 PEE . . . Z 14 255.938 291.734 232.474 1 20 ? C3 PEE 401 H 1 HETATM 5 C C4 PEE . . . Z 14 258.19 295.698 230.387 1 20 ? C4 PEE 401 H 1 HETATM 6 C C5 PEE . . . Z 14 257.21 296.736 229.836 1 20 ? C5 PEE 401 H 1 HETATM 7 C C10 PEE . . . Z 14 252.991 290.47 231.847 1 20 ? C10 PEE 401 H 1 HETATM 8 C C11 PEE . . . Z 14 252.244 289.662 232.929 1 20 ? C11 PEE 401 H 1 HETATM 9 C C12 PEE . . . Z 14 250.734 289.524 232.611 1 20 ? C12 PEE 401 H 1 HETATM 10 C C13 PEE . . . Z 14 249.932 289.053 233.832 1 20 ? C13 PEE 401 H 1 HETATM 11 C C14 PEE . . . Z 14 248.805 290.061 234.204 1 20 ? C14 PEE 401 H 1 HETATM 12 C C15 PEE . . . Z 14 248.184 289.766 235.592 1 20 ? C15 PEE 401 H 1 HETATM 13 C C16 PEE . . . Z 14 247.506 291.018 236.197 1 20 ? C16 PEE 401 H 1 HETATM 14 C C17 PEE . . . Z 14 246.295 290.663 237.093 1 20 ? C17 PEE 401 H 1 HETATM 15 C C18 PEE . . . Z 14 246.167 291.638 238.284 1 20 ? C18 PEE 401 H 1 HETATM 16 C C19 PEE . . . Z 14 244.758 292.291 238.378 1 20 ? C19 PEE 401 H 1 HETATM 17 C C20 PEE . . . Z 14 244.799 293.713 238.999 1 20 ? C20 PEE 401 H 1 HETATM 18 C C21 PEE . . . Z 14 243.884 294.676 238.222 1 20 ? C21 PEE 401 H 1 HETATM 19 C C22 PEE . . . Z 14 243.679 296.023 238.939 1 20 ? C22 PEE 401 H 1 HETATM 20 C C23 PEE . . . Z 14 243.645 297.195 237.947 1 20 ? C23 PEE 401 H 1 HETATM 21 C C24 PEE . . . Z 14 242.218 297.752 237.768 1 20 ? C24 PEE 401 H 1 HETATM 22 C C25 PEE . . . Z 14 242.132 299.26 238.099 1 20 ? C25 PEE 401 H 1 HETATM 23 C C26 PEE . . . Z 14 240.685 299.696 238.345 1 20 ? C26 PEE 401 H 1 HETATM 24 C C27 PEE . . . Z 14 240.514 300.426 239.673 1 20 ? C27 PEE 401 H 1 HETATM 25 C C30 PEE . . . Z 14 254.82 290.336 234.136 1 20 ? C30 PEE 401 H 1 HETATM 26 C C31 PEE . . . Z 14 254.436 288.964 234.741 1 20 ? C31 PEE 401 H 1 HETATM 27 C C32 PEE . . . Z 14 253.886 289.087 236.187 1 20 ? C32 PEE 401 H 1 HETATM 28 C C33 PEE . . . Z 14 252.877 287.949 236.535 1 20 ? C33 PEE 401 H 1 HETATM 29 C C34 PEE . . . Z 14 252.877 287.603 238.025 1 20 ? C34 PEE 401 H 1 HETATM 30 C C35 PEE . . . Z 14 251.47 287.594 238.639 1 20 ? C35 PEE 401 H 1 HETATM 31 C C36 PEE . . . Z 14 250.838 289.012 238.714 1 20 ? C36 PEE 401 H 1 HETATM 32 C C37 PEE . . . Z 14 250.031 289.242 240.042 1 20 ? C37 PEE 401 H 1 HETATM 33 C C38 PEE . . . Z 14 249.828 290.761 240.352 1 20 ? C38 PEE 401 H 1 HETATM 34 C C39 PEE . . . Z 14 248.652 291.037 241.337 1 20 ? C39 PEE 401 H 1 HETATM 35 C C40 PEE . . . Z 14 247.607 292.011 240.722 1 20 ? C40 PEE 401 H 1 HETATM 36 C C41 PEE . . . Z 14 247.229 293.158 241.66 1 20 ? C41 PEE 401 H 1 HETATM 37 C C42 PEE . . . Z 14 247.156 292.711 243.125 1 20 ? C42 PEE 401 H 1 HETATM 38 C C43 PEE . . . Z 14 248.527 292.645 243.767 1 20 ? C43 PEE 401 H 1 HETATM 39 C C44 PEE . . . Z 14 248.469 292.751 245.281 1 20 ? C44 PEE 401 H 1 HETATM 40 C C45 PEE . . . Z 14 247.816 294.029 245.741 1 20 ? C45 PEE 401 H 1 HETATM 41 O O4 PEE . . . Z 14 253.094 290.049 230.704 1 20 ? O4 PEE 401 H 1 HETATM 42 O O5 PEE . . . Z 14 254.322 291.35 234.598 1 20 ? O5 PEE 401 H 1 HETATM 43 O O2 PEE . . . Z 14 253.561 291.731 232.191 1 20 ? O2 PEE 401 H 1 HETATM 44 O O3 PEE . . . Z 14 255.756 290.41 233.029 1 20 ? O3 PEE 401 H 1 HETATM 45 O O1P PEE . . . Z 14 257.153 292.199 229.555 1 20 ? O1P PEE 401 H 1 HETATM 46 O O2P PEE . . . Z 14 255.925 293.979 228.397 1 20 ? O2P PEE 401 H 1 HETATM 47 O O3P PEE . . . Z 14 255.996 293.978 230.935 1 20 ? O3P PEE 401 H 1 HETATM 48 O O4P PEE . . . Z 14 258.123 294.534 229.566 1 20 ? O4P PEE 401 H 1 HETATM 49 P P PEE . . . Z 14 256.79 293.657 229.592 1 20 ? P PEE 401 H 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #