data_5XTE # _model_server_result.job_id 3GK2oJLxGkZmCfOf3tJvuA _model_server_result.datetime_utc '2024-11-30 05:58:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":402}' # _entry.id 5XTE # _exptl.entry_id 5XTE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 AA N N ? 15 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 144 C CYS 222 1_555 C SG CYS 160 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 N SG CYS 144 P CYS 222 1_555 N SG CYS 160 P CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C ND1 HIS 141 C HIS 219 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 C ND1 HIS 161 C HIS 239 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 H NE2 HIS 41 H HIS 125 1_555 AA FE HEC . H HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 I NE2 HIS 82 J HIS 83 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc5 I NE2 HIS 96 J HIS 97 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc6 I NE2 HIS 181 J HIS 182 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc7 I NE2 HIS 195 J HIS 196 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc8 N ND1 HIS 161 P HIS 239 1_555 LA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 S NE2 HIS 41 U HIS 125 1_555 PA FE HEC . U HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc10 T NE2 HIS 82 V HIS 83 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 T NE2 HIS 96 V HIS 97 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc12 T NE2 HIS 181 V HIS 182 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc13 T NE2 HIS 195 V HIS 196 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XTE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 CDL A 1 101 101 CDL CDL . X 13 FES C 1 301 301 FES FES . Y 12 CDL G 1 101 101 CDL CDL . Z 14 PEE H 1 401 302 PEE PEE . AA 15 HEC H 1 402 401 HEC HEC . BA 12 CDL H 1 403 402 CDL CDL . CA 16 HEM J 1 401 401 HEM HEM . DA 16 HEM J 1 402 402 HEM HEM . EA 14 PEE J 1 403 403 PEE PEE . FA 12 CDL J 1 404 404 CDL CDL . GA 12 CDL J 1 405 102 CDL CDL . HA 17 PLX L 1 501 501 PLX PLX . IA 12 CDL L 1 502 502 CDL CDL . JA 14 PEE L 1 503 503 PEE PEE . KA 12 CDL N 1 101 101 CDL CDL . LA 13 FES P 1 301 301 FES FES . MA 17 PLX Q 1 101 101 PLX PLX . NA 17 PLX T 1 101 101 PLX PLX . OA 14 PEE U 1 401 302 PEE PEE . PA 15 HEC U 1 402 401 HEC HEC . QA 12 CDL U 1 403 402 CDL CDL . RA 16 HEM V 1 401 401 HEM HEM . SA 16 HEM V 1 402 402 HEM HEM . TA 14 PEE V 1 403 403 PEE PEE . UA 12 CDL Y 1 501 501 CDL CDL . VA 14 PEE Y 1 502 502 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . AA 15 242.356 278.754 198.918 1 37.14 ? FE HEC 402 H 1 HETATM 2 C CHA HEC . . . AA 15 240.015 276.856 200.474 1 45.12 ? CHA HEC 402 H 1 HETATM 3 C CHB HEC . . . AA 15 243.937 279.321 201.779 1 36.26 ? CHB HEC 402 H 1 HETATM 4 C CHC HEC . . . AA 15 245.104 279.774 197.129 1 36.23 ? CHC HEC 402 H 1 HETATM 5 C CHD HEC . . . AA 15 240.398 279.196 196.201 1 35.99 ? CHD HEC 402 H 1 HETATM 6 N NA HEC . . . AA 15 241.95 278.28 200.852 1 40.51 ? NA HEC 402 H 1 HETATM 7 C C1A HEC . . . AA 15 241.105 277.256 201.217 1 44.71 ? C1A HEC 402 H 1 HETATM 8 C C2A HEC . . . AA 15 241.581 276.707 202.473 1 43.95 ? C2A HEC 402 H 1 HETATM 9 C C3A HEC . . . AA 15 242.67 277.395 202.83 1 41.38 ? C3A HEC 402 H 1 HETATM 10 C C4A HEC . . . AA 15 242.917 278.404 201.824 1 40.65 ? C4A HEC 402 H 1 HETATM 11 C CMA HEC . . . AA 15 243.511 277.163 204.101 1 44.54 ? CMA HEC 402 H 1 HETATM 12 C CAA HEC . . . AA 15 240.968 275.54 203.282 1 44.22 ? CAA HEC 402 H 1 HETATM 13 C CBA HEC . . . AA 15 239.506 275.783 203.632 1 43.01 ? CBA HEC 402 H 1 HETATM 14 C CGA HEC . . . AA 15 238.967 274.568 204.337 1 46.99 ? CGA HEC 402 H 1 HETATM 15 O O1A HEC . . . AA 15 237.733 274.502 204.56 1 44.75 ? O1A HEC 402 H 1 HETATM 16 O O2A HEC . . . AA 15 239.772 273.663 204.673 1 52.37 ? O2A HEC 402 H 1 HETATM 17 N NB HEC . . . AA 15 244.183 279.58 199.37 1 34.03 ? NB HEC 402 H 1 HETATM 18 C C1B HEC . . . AA 15 244.695 279.427 200.64 1 33.91 ? C1B HEC 402 H 1 HETATM 19 C C2B HEC . . . AA 15 246.131 279.362 200.546 1 34.42 ? C2B HEC 402 H 1 HETATM 20 C C3B HEC . . . AA 15 246.469 279.48 199.261 1 35.55 ? C3B HEC 402 H 1 HETATM 21 C C4B HEC . . . AA 15 245.244 279.622 198.49 1 34.26 ? C4B HEC 402 H 1 HETATM 22 C CMB HEC . . . AA 15 247.1 279.178 201.731 1 35.89 ? CMB HEC 402 H 1 HETATM 23 C CAB HEC . . . AA 15 247.922 279.448 198.741 1 35.37 ? CAB HEC 402 H 1 HETATM 24 C CBB HEC . . . AA 15 248.231 280.65 197.838 1 37.04 ? CBB HEC 402 H 1 HETATM 25 N NC HEC . . . AA 15 242.685 279.42 197.018 1 37.24 ? NC HEC 402 H 1 HETATM 26 C C1C HEC . . . AA 15 243.91 279.703 196.452 1 36.11 ? C1C HEC 402 H 1 HETATM 27 C C2C HEC . . . AA 15 243.69 280.05 195.066 1 36.11 ? C2C HEC 402 H 1 HETATM 28 C C3C HEC . . . AA 15 242.421 279.756 194.773 1 35.54 ? C3C HEC 402 H 1 HETATM 29 C C4C HEC . . . AA 15 241.741 279.439 196.015 1 35.45 ? C4C HEC 402 H 1 HETATM 30 C CMC HEC . . . AA 15 244.81 280.246 194.023 1 34.36 ? CMC HEC 402 H 1 HETATM 31 C CAC HEC . . . AA 15 241.8 279.88 193.364 1 32.93 ? CAC HEC 402 H 1 HETATM 32 C CBC HEC . . . AA 15 240.617 280.865 193.35 1 35.78 ? CBC HEC 402 H 1 HETATM 33 N ND HEC . . . AA 15 240.501 278.082 198.398 1 43.18 ? ND HEC 402 H 1 HETATM 34 C C1D HEC . . . AA 15 239.844 278.488 197.243 1 41.36 ? C1D HEC 402 H 1 HETATM 35 C C2D HEC . . . AA 15 238.475 278.044 197.311 1 44.43 ? C2D HEC 402 H 1 HETATM 36 C C3D HEC . . . AA 15 238.347 277.303 198.646 1 45.52 ? C3D HEC 402 H 1 HETATM 37 C C4D HEC . . . AA 15 239.656 277.383 199.253 1 44.37 ? C4D HEC 402 H 1 HETATM 38 C CMD HEC . . . AA 15 237.378 278.267 196.251 1 45.19 ? CMD HEC 402 H 1 HETATM 39 C CAD HEC . . . AA 15 237.078 276.633 199.213 1 45.54 ? CAD HEC 402 H 1 HETATM 40 C CBD HEC . . . AA 15 237.245 275.12 199.233 1 48.43 ? CBD HEC 402 H 1 HETATM 41 C CGD HEC . . . AA 15 235.89 274.468 199.259 1 50.72 ? CGD HEC 402 H 1 HETATM 42 O O1D HEC . . . AA 15 234.874 275.201 199.342 1 53.07 ? O1D HEC 402 H 1 HETATM 43 O O2D HEC . . . AA 15 235.82 273.214 199.196 1 53.31 ? O2D HEC 402 H 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #