data_5XTE # _model_server_result.job_id 3n2nhTojd0jFuQrQlIRI-A _model_server_result.datetime_utc '2024-11-14 17:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":402}' # _entry.id 5XTE # _exptl.entry_id 5XTE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 CA N N ? 16 DA N N ? 16 RA N N ? 16 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 144 C CYS 222 1_555 C SG CYS 160 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 N SG CYS 144 P CYS 222 1_555 N SG CYS 160 P CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C ND1 HIS 141 C HIS 219 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 C ND1 HIS 161 C HIS 239 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 H NE2 HIS 41 H HIS 125 1_555 AA FE HEC . H HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 I NE2 HIS 82 J HIS 83 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc5 I NE2 HIS 96 J HIS 97 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc6 I NE2 HIS 181 J HIS 182 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc7 I NE2 HIS 195 J HIS 196 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc8 N ND1 HIS 161 P HIS 239 1_555 LA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 S NE2 HIS 41 U HIS 125 1_555 PA FE HEC . U HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc10 T NE2 HIS 82 V HIS 83 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 T NE2 HIS 96 V HIS 97 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc12 T NE2 HIS 181 V HIS 182 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc13 T NE2 HIS 195 V HIS 196 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 5XTE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 CDL A 1 101 101 CDL CDL . X 13 FES C 1 301 301 FES FES . Y 12 CDL G 1 101 101 CDL CDL . Z 14 PEE H 1 401 302 PEE PEE . AA 15 HEC H 1 402 401 HEC HEC . BA 12 CDL H 1 403 402 CDL CDL . CA 16 HEM J 1 401 401 HEM HEM . DA 16 HEM J 1 402 402 HEM HEM . EA 14 PEE J 1 403 403 PEE PEE . FA 12 CDL J 1 404 404 CDL CDL . GA 12 CDL J 1 405 102 CDL CDL . HA 17 PLX L 1 501 501 PLX PLX . IA 12 CDL L 1 502 502 CDL CDL . JA 14 PEE L 1 503 503 PEE PEE . KA 12 CDL N 1 101 101 CDL CDL . LA 13 FES P 1 301 301 FES FES . MA 17 PLX Q 1 101 101 PLX PLX . NA 17 PLX T 1 101 101 PLX PLX . OA 14 PEE U 1 401 302 PEE PEE . PA 15 HEC U 1 402 401 HEC HEC . QA 12 CDL U 1 403 402 CDL CDL . RA 16 HEM V 1 401 401 HEM HEM . SA 16 HEM V 1 402 402 HEM HEM . TA 14 PEE V 1 403 403 PEE PEE . UA 12 CDL Y 1 501 501 CDL CDL . VA 14 PEE Y 1 502 502 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . DA 16 231.996 277.715 252.368 1 7.22 ? CHA HEM 402 J 1 HETATM 2 C CHB HEM . . . DA 16 232.513 281.061 248.908 1 2.16 ? CHB HEM 402 J 1 HETATM 3 C CHC HEM . . . DA 16 230.033 278.248 245.835 1 5.68 ? CHC HEM 402 J 1 HETATM 4 C CHD HEM . . . DA 16 228.813 275.361 249.499 1 5.79 ? CHD HEM 402 J 1 HETATM 5 C C1A HEM . . . DA 16 232.472 278.797 251.663 1 6.65 ? C1A HEM 402 J 1 HETATM 6 C C2A HEM . . . DA 16 233.554 279.688 252.049 1 6.33 ? C2A HEM 402 J 1 HETATM 7 C C3A HEM . . . DA 16 233.687 280.604 251.092 1 5.74 ? C3A HEM 402 J 1 HETATM 8 C C4A HEM . . . DA 16 232.702 280.342 250.065 1 2.16 ? C4A HEM 402 J 1 HETATM 9 C CMA HEM . . . DA 16 234.722 281.747 251.092 1 4.26 ? CMA HEM 402 J 1 HETATM 10 C CAA HEM . . . DA 16 234.428 279.626 253.324 1 5.21 ? CAA HEM 402 J 1 HETATM 11 C CBA HEM . . . DA 16 235.1 278.268 253.484 1 9.28 ? CBA HEM 402 J 1 HETATM 12 C CGA HEM . . . DA 16 236.025 278.026 252.324 1 7.04 ? CGA HEM 402 J 1 HETATM 13 O O1A HEM . . . DA 16 236.539 279.018 251.748 1 12.08 ? O1A HEM 402 J 1 HETATM 14 O O2A HEM . . . DA 16 236.257 276.838 251.985 1 2.22 ? O2A HEM 402 J 1 HETATM 15 C C1B HEM . . . DA 16 231.86 280.608 247.782 1 4.75 ? C1B HEM 402 J 1 HETATM 16 C C2B HEM . . . DA 16 231.696 281.336 246.542 1 2.16 ? C2B HEM 402 J 1 HETATM 17 C C3B HEM . . . DA 16 231.013 280.554 245.688 1 5.88 ? C3B HEM 402 J 1 HETATM 18 C C4B HEM . . . DA 16 230.722 279.313 246.37 1 5.51 ? C4B HEM 402 J 1 HETATM 19 C CMB HEM . . . DA 16 232.249 282.76 246.315 1 2.16 ? CMB HEM 402 J 1 HETATM 20 C CAB HEM . . . DA 16 230.555 280.824 244.231 1 6.07 ? CAB HEM 402 J 1 HETATM 21 C CBB HEM . . . DA 16 230.679 281.991 243.593 1 8.66 ? CBB HEM 402 J 1 HETATM 22 C C1C HEM . . . DA 16 229.526 277.188 246.548 1 6.15 ? C1C HEM 402 J 1 HETATM 23 C C2C HEM . . . DA 16 228.843 276.036 246.001 1 2.16 ? C2C HEM 402 J 1 HETATM 24 C C3C HEM . . . DA 16 228.504 275.231 247.023 1 2.16 ? C3C HEM 402 J 1 HETATM 25 C C4C HEM . . . DA 16 228.967 275.866 248.234 1 6.01 ? C4C HEM 402 J 1 HETATM 26 C CMC HEM . . . DA 16 228.591 275.839 244.491 1 7.42 ? CMC HEM 402 J 1 HETATM 27 C CAC HEM . . . DA 16 227.762 273.872 247.039 1 4.81 ? CAC HEM 402 J 1 HETATM 28 C CBC HEM . . . DA 16 227.325 273.226 245.953 1 2.8 ? CBC HEM 402 J 1 HETATM 29 C C1D HEM . . . DA 16 229.587 275.677 250.587 1 5.93 ? C1D HEM 402 J 1 HETATM 30 C C2D HEM . . . DA 16 229.617 274.92 251.812 1 2.16 ? C2D HEM 402 J 1 HETATM 31 C C3D HEM . . . DA 16 230.615 275.644 252.717 1 6.28 ? C3D HEM 402 J 1 HETATM 32 C C4D HEM . . . DA 16 231.08 276.777 251.945 1 6.05 ? C4D HEM 402 J 1 HETATM 33 C CMD HEM . . . DA 16 228.814 273.645 252.132 1 6.78 ? CMD HEM 402 J 1 HETATM 34 C CAD HEM . . . DA 16 231.001 275.233 254.154 1 2.16 ? CAD HEM 402 J 1 HETATM 35 C CBD HEM . . . DA 16 232.492 274.937 254.253 1 2.16 ? CBD HEM 402 J 1 HETATM 36 C CGD HEM . . . DA 16 232.895 274.837 255.699 1 4.71 ? CGD HEM 402 J 1 HETATM 37 O O1D HEM . . . DA 16 232.003 274.959 256.575 1 2.16 ? O1D HEM 402 J 1 HETATM 38 O O2D HEM . . . DA 16 234.104 274.64 255.972 1 2.52 ? O2D HEM 402 J 1 HETATM 39 N NA HEM . . . DA 16 231.977 279.233 250.447 1 4.53 ? NA HEM 402 J 1 HETATM 40 N NB HEM . . . DA 16 231.253 279.378 247.642 1 6.68 ? NB HEM 402 J 1 HETATM 41 N NC HEM . . . DA 16 229.587 277.053 247.917 1 2.16 ? NC HEM 402 J 1 HETATM 42 N ND HEM . . . DA 16 230.458 276.758 250.701 1 2.16 ? ND HEM 402 J 1 HETATM 43 FE FE HEM . . . DA 16 230.898 278.061 249.152 1 2.58 ? FE HEM 402 J 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #