data_5XTE # _model_server_result.job_id kSy8qGVg5lQNDBRYT0UPVA _model_server_result.datetime_utc '2024-11-14 17:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":502}' # _entry.id 5XTE # _exptl.entry_id 5XTE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 W N N ? 12 Y N N ? 12 BA N N ? 12 FA N N ? 12 GA N N ? 12 IA N N ? 12 KA N N ? 12 QA N N ? 12 UA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 144 C CYS 222 1_555 C SG CYS 160 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 N SG CYS 144 P CYS 222 1_555 N SG CYS 160 P CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C ND1 HIS 141 C HIS 219 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 C ND1 HIS 161 C HIS 239 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 H NE2 HIS 41 H HIS 125 1_555 AA FE HEC . H HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 I NE2 HIS 82 J HIS 83 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc5 I NE2 HIS 96 J HIS 97 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc6 I NE2 HIS 181 J HIS 182 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc7 I NE2 HIS 195 J HIS 196 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc8 N ND1 HIS 161 P HIS 239 1_555 LA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 S NE2 HIS 41 U HIS 125 1_555 PA FE HEC . U HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc10 T NE2 HIS 82 V HIS 83 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 T NE2 HIS 96 V HIS 97 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc12 T NE2 HIS 181 V HIS 182 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc13 T NE2 HIS 195 V HIS 196 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 5XTE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 CDL A 1 101 101 CDL CDL . X 13 FES C 1 301 301 FES FES . Y 12 CDL G 1 101 101 CDL CDL . Z 14 PEE H 1 401 302 PEE PEE . AA 15 HEC H 1 402 401 HEC HEC . BA 12 CDL H 1 403 402 CDL CDL . CA 16 HEM J 1 401 401 HEM HEM . DA 16 HEM J 1 402 402 HEM HEM . EA 14 PEE J 1 403 403 PEE PEE . FA 12 CDL J 1 404 404 CDL CDL . GA 12 CDL J 1 405 102 CDL CDL . HA 17 PLX L 1 501 501 PLX PLX . IA 12 CDL L 1 502 502 CDL CDL . JA 14 PEE L 1 503 503 PEE PEE . KA 12 CDL N 1 101 101 CDL CDL . LA 13 FES P 1 301 301 FES FES . MA 17 PLX Q 1 101 101 PLX PLX . NA 17 PLX T 1 101 101 PLX PLX . OA 14 PEE U 1 401 302 PEE PEE . PA 15 HEC U 1 402 401 HEC HEC . QA 12 CDL U 1 403 402 CDL CDL . RA 16 HEM V 1 401 401 HEM HEM . SA 16 HEM V 1 402 402 HEM HEM . TA 14 PEE V 1 403 403 PEE PEE . UA 12 CDL Y 1 501 501 CDL CDL . VA 14 PEE Y 1 502 502 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . IA 12 246.603 299.957 265.678 1 26.43 ? C1 CDL 502 L 1 HETATM 2 O O1 CDL . . . IA 12 246.56 299.468 267.014 1 26.57 ? O1 CDL 502 L 1 HETATM 3 C CA2 CDL . . . IA 12 245.958 298.892 264.766 1 30.23 ? CA2 CDL 502 L 1 HETATM 4 O OA2 CDL . . . IA 12 245.013 298.153 265.529 1 36.05 ? OA2 CDL 502 L 1 HETATM 5 P PA1 CDL . . . IA 12 245.027 296.566 265.407 1 41.48 ? PA1 CDL 502 L 1 HETATM 6 O OA3 CDL . . . IA 12 243.62 296.033 265.589 1 43.86 ? OA3 CDL 502 L 1 HETATM 7 O OA4 CDL . . . IA 12 245.906 295.992 266.478 1 41.35 ? OA4 CDL 502 L 1 HETATM 8 O OA5 CDL . . . IA 12 245.577 296.13 263.972 1 41.39 ? OA5 CDL 502 L 1 HETATM 9 C CA3 CDL . . . IA 12 245.246 294.791 263.501 1 40.68 ? CA3 CDL 502 L 1 HETATM 10 C CA4 CDL . . . IA 12 245.777 294.591 262.094 1 41.61 ? CA4 CDL 502 L 1 HETATM 11 O OA6 CDL . . . IA 12 246.823 295.526 261.813 1 41.23 ? OA6 CDL 502 L 1 HETATM 12 C CA5 CDL . . . IA 12 246.51 296.65 260.935 1 43.07 ? CA5 CDL 502 L 1 HETATM 13 O OA7 CDL . . . IA 12 245.894 297.617 261.373 1 44.55 ? OA7 CDL 502 L 1 HETATM 14 C C11 CDL . . . IA 12 246.971 296.648 259.445 1 43.5 ? C11 CDL 502 L 1 HETATM 15 C C12 CDL . . . IA 12 246.649 297.969 258.74 1 46.08 ? C12 CDL 502 L 1 HETATM 16 C C13 CDL . . . IA 12 245.627 297.813 257.597 1 47.48 ? C13 CDL 502 L 1 HETATM 17 C C14 CDL . . . IA 12 244.16 297.889 258.098 1 48.82 ? C14 CDL 502 L 1 HETATM 18 C C15 CDL . . . IA 12 243.878 299.154 258.883 1 50.4 ? C15 CDL 502 L 1 HETATM 19 C C16 CDL . . . IA 12 242.494 299.789 258.536 1 51.05 ? C16 CDL 502 L 1 HETATM 20 C C17 CDL . . . IA 12 242.598 300.849 257.435 1 50.9 ? C17 CDL 502 L 1 HETATM 21 C C18 CDL . . . IA 12 241.276 301.035 256.667 1 49.98 ? C18 CDL 502 L 1 HETATM 22 C CA6 CDL . . . IA 12 244.611 294.711 261.11 1 42.59 ? CA6 CDL 502 L 1 HETATM 23 O OA8 CDL . . . IA 12 244.442 293.431 260.452 1 45.3 ? OA8 CDL 502 L 1 HETATM 24 C CA7 CDL . . . IA 12 244.852 293.448 259.069 1 44.46 ? CA7 CDL 502 L 1 HETATM 25 O OA9 CDL . . . IA 12 246.029 293.497 258.793 1 46.67 ? OA9 CDL 502 L 1 HETATM 26 C C31 CDL . . . IA 12 243.813 293.414 257.955 1 43.53 ? C31 CDL 502 L 1 HETATM 27 C C32 CDL . . . IA 12 244.254 292.562 256.801 1 42.85 ? C32 CDL 502 L 1 HETATM 28 C C33 CDL . . . IA 12 243.588 291.217 256.812 1 43.71 ? C33 CDL 502 L 1 HETATM 29 C C34 CDL . . . IA 12 242.282 291.202 255.982 1 45.58 ? C34 CDL 502 L 1 HETATM 30 C C35 CDL . . . IA 12 242.335 290.161 254.836 1 46.68 ? C35 CDL 502 L 1 HETATM 31 C C36 CDL . . . IA 12 240.941 289.559 254.522 1 47.42 ? C36 CDL 502 L 1 HETATM 32 C C37 CDL . . . IA 12 241.031 288.333 253.591 1 47.04 ? C37 CDL 502 L 1 HETATM 33 C C38 CDL . . . IA 12 239.632 287.904 253.039 1 47.39 ? C38 CDL 502 L 1 HETATM 34 C CB2 CDL . . . IA 12 248.068 300.218 265.329 1 22.53 ? CB2 CDL 502 L 1 HETATM 35 O OB2 CDL . . . IA 12 248.361 299.552 264.106 1 15.55 ? OB2 CDL 502 L 1 HETATM 36 P PB2 CDL . . . IA 12 249.636 300.057 263.238 1 11.56 ? PB2 CDL 502 L 1 HETATM 37 O OB3 CDL . . . IA 12 250.363 301.13 263.984 1 11.22 ? OB3 CDL 502 L 1 HETATM 38 O OB4 CDL . . . IA 12 250.554 298.891 263.001 1 13.22 ? OB4 CDL 502 L 1 HETATM 39 O OB5 CDL . . . IA 12 249.142 300.633 261.836 1 16.06 ? OB5 CDL 502 L 1 HETATM 40 C CB3 CDL . . . IA 12 247.793 301.065 261.716 1 26.24 ? CB3 CDL 502 L 1 HETATM 41 C CB4 CDL . . . IA 12 247.769 302.248 260.763 1 32.14 ? CB4 CDL 502 L 1 HETATM 42 O OB6 CDL . . . IA 12 248.904 302.185 259.954 1 35.51 ? OB6 CDL 502 L 1 HETATM 43 C CB5 CDL . . . IA 12 248.629 301.855 258.594 1 37.72 ? CB5 CDL 502 L 1 HETATM 44 O OB7 CDL . . . IA 12 247.853 300.95 258.328 1 39.71 ? OB7 CDL 502 L 1 HETATM 45 C C51 CDL . . . IA 12 249.309 302.646 257.464 1 38.15 ? C51 CDL 502 L 1 HETATM 46 C C52 CDL . . . IA 12 250.789 302.257 257.285 1 37.84 ? C52 CDL 502 L 1 HETATM 47 C C53 CDL . . . IA 12 250.937 300.937 256.515 1 35.62 ? C53 CDL 502 L 1 HETATM 48 C C54 CDL . . . IA 12 251.668 301.116 255.17 1 35.36 ? C54 CDL 502 L 1 HETATM 49 C C55 CDL . . . IA 12 251.324 302.459 254.487 1 33.36 ? C55 CDL 502 L 1 HETATM 50 C C56 CDL . . . IA 12 251.283 302.352 252.96 1 32.5 ? C56 CDL 502 L 1 HETATM 51 C C57 CDL . . . IA 12 249.935 301.825 252.443 1 32.16 ? C57 CDL 502 L 1 HETATM 52 C C58 CDL . . . IA 12 249.705 302.188 250.988 1 31.26 ? C58 CDL 502 L 1 HETATM 53 C CB6 CDL . . . IA 12 247.792 303.552 261.572 1 35.7 ? CB6 CDL 502 L 1 HETATM 54 O OB8 CDL . . . IA 12 246.817 304.446 261.05 1 41.59 ? OB8 CDL 502 L 1 HETATM 55 C CB7 CDL . . . IA 12 247.366 305.658 260.468 1 44.06 ? CB7 CDL 502 L 1 HETATM 56 O OB9 CDL . . . IA 12 246.828 306.158 259.516 1 46.92 ? OB9 CDL 502 L 1 HETATM 57 C C71 CDL . . . IA 12 248.645 306.313 261.073 1 45.64 ? C71 CDL 502 L 1 HETATM 58 C C72 CDL . . . IA 12 249.547 306.977 260.019 1 45.76 ? C72 CDL 502 L 1 HETATM 59 C C73 CDL . . . IA 12 249.943 306.014 258.871 1 44.26 ? C73 CDL 502 L 1 HETATM 60 C C74 CDL . . . IA 12 250.746 306.711 257.772 1 45.79 ? C74 CDL 502 L 1 HETATM 61 C C75 CDL . . . IA 12 250.765 305.908 256.443 1 44.04 ? C75 CDL 502 L 1 HETATM 62 C C76 CDL . . . IA 12 251.235 306.766 255.258 1 43.09 ? C76 CDL 502 L 1 HETATM 63 C C77 CDL . . . IA 12 251.07 306.046 253.889 1 42.24 ? C77 CDL 502 L 1 HETATM 64 C C78 CDL . . . IA 12 251.769 306.803 252.751 1 40.34 ? C78 CDL 502 L 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 64 #