data_5XTE # _model_server_result.job_id F-rVLVC3IQqYQ-NrY--X2A _model_server_result.datetime_utc '2024-11-14 17:13:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":503}' # _entry.id 5XTE # _exptl.entry_id 5XTE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.073 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Z N N ? 14 EA N N ? 14 JA N N ? 14 OA N N ? 14 TA N N ? 14 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 144 C CYS 222 1_555 C SG CYS 160 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 N SG CYS 144 P CYS 222 1_555 N SG CYS 160 P CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C ND1 HIS 141 C HIS 219 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 C ND1 HIS 161 C HIS 239 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 H NE2 HIS 41 H HIS 125 1_555 AA FE HEC . H HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 I NE2 HIS 82 J HIS 83 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc5 I NE2 HIS 96 J HIS 97 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc6 I NE2 HIS 181 J HIS 182 1_555 CA FE HEM . J HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc7 I NE2 HIS 195 J HIS 196 1_555 DA FE HEM . J HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc8 N ND1 HIS 161 P HIS 239 1_555 LA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 S NE2 HIS 41 U HIS 125 1_555 PA FE HEC . U HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc10 T NE2 HIS 82 V HIS 83 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 T NE2 HIS 96 V HIS 97 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc12 T NE2 HIS 181 V HIS 182 1_555 RA FE HEM . V HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc13 T NE2 HIS 195 V HIS 196 1_555 SA FE HEM . V HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'C41 H83 N O8 P 1' _chem_comp.formula_weight 749.073 _chem_comp.id PEE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 5XTE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 CDL A 1 101 101 CDL CDL . X 13 FES C 1 301 301 FES FES . Y 12 CDL G 1 101 101 CDL CDL . Z 14 PEE H 1 401 302 PEE PEE . AA 15 HEC H 1 402 401 HEC HEC . BA 12 CDL H 1 403 402 CDL CDL . CA 16 HEM J 1 401 401 HEM HEM . DA 16 HEM J 1 402 402 HEM HEM . EA 14 PEE J 1 403 403 PEE PEE . FA 12 CDL J 1 404 404 CDL CDL . GA 12 CDL J 1 405 102 CDL CDL . HA 17 PLX L 1 501 501 PLX PLX . IA 12 CDL L 1 502 502 CDL CDL . JA 14 PEE L 1 503 503 PEE PEE . KA 12 CDL N 1 101 101 CDL CDL . LA 13 FES P 1 301 301 FES FES . MA 17 PLX Q 1 101 101 PLX PLX . NA 17 PLX T 1 101 101 PLX PLX . OA 14 PEE U 1 401 302 PEE PEE . PA 15 HEC U 1 402 401 HEC HEC . QA 12 CDL U 1 403 402 CDL CDL . RA 16 HEM V 1 401 401 HEM HEM . SA 16 HEM V 1 402 402 HEM HEM . TA 14 PEE V 1 403 403 PEE PEE . UA 12 CDL Y 1 501 501 CDL CDL . VA 14 PEE Y 1 502 502 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEE . . . JA 14 250.515 293.231 257.597 1 20 ? C2 PEE 503 L 1 HETATM 2 C C1 PEE . . . JA 14 250.912 293.424 259.06 1 20 ? C1 PEE 503 L 1 HETATM 3 N N PEE . . . JA 14 250.81 296.075 265.157 1 20 ? N PEE 503 L 1 HETATM 4 C C3 PEE . . . JA 14 249.724 291.915 257.368 1 20 ? C3 PEE 503 L 1 HETATM 5 C C4 PEE . . . JA 14 250.074 294.514 263.452 1 20 ? C4 PEE 503 L 1 HETATM 6 C C5 PEE . . . JA 14 250.722 295.869 263.742 1 20 ? C5 PEE 503 L 1 HETATM 7 C C10 PEE . . . JA 14 250.038 294.897 255.937 1 20 ? C10 PEE 503 L 1 HETATM 8 C C11 PEE . . . JA 14 250.744 293.998 254.903 1 20 ? C11 PEE 503 L 1 HETATM 9 C C12 PEE . . . JA 14 249.795 293.594 253.745 1 20 ? C12 PEE 503 L 1 HETATM 10 C C13 PEE . . . JA 14 250.1 292.189 253.192 1 20 ? C13 PEE 503 L 1 HETATM 11 C C14 PEE . . . JA 14 248.826 291.289 253.219 1 20 ? C14 PEE 503 L 1 HETATM 12 C C15 PEE . . . JA 14 248.074 291.303 251.864 1 20 ? C15 PEE 503 L 1 HETATM 13 C C16 PEE . . . JA 14 246.579 290.937 252.033 1 20 ? C16 PEE 503 L 1 HETATM 14 C C17 PEE . . . JA 14 245.713 292.184 252.327 1 20 ? C17 PEE 503 L 1 HETATM 15 C C18 PEE . . . JA 14 244.21 291.934 252.075 1 20 ? C18 PEE 503 L 1 HETATM 16 C C19 PEE . . . JA 14 243.856 291.913 250.56 1 20 ? C19 PEE 503 L 1 HETATM 17 C C20 PEE . . . JA 14 242.328 291.77 250.321 1 20 ? C20 PEE 503 L 1 HETATM 18 C C21 PEE . . . JA 14 241.764 292.91 249.452 1 20 ? C21 PEE 503 L 1 HETATM 19 C C22 PEE . . . JA 14 240.539 292.469 248.623 1 20 ? C22 PEE 503 L 1 HETATM 20 C C23 PEE . . . JA 14 239.748 293.663 248.063 1 20 ? C23 PEE 503 L 1 HETATM 21 C C24 PEE . . . JA 14 239.311 293.443 246.597 1 20 ? C24 PEE 503 L 1 HETATM 22 C C25 PEE . . . JA 14 238.284 294.501 246.119 1 20 ? C25 PEE 503 L 1 HETATM 23 C C26 PEE . . . JA 14 238.325 294.702 244.603 1 20 ? C26 PEE 503 L 1 HETATM 24 C C27 PEE . . . JA 14 237.311 295.737 244.13 1 20 ? C27 PEE 503 L 1 HETATM 25 C C30 PEE . . . JA 14 247.828 292.74 256.074 1 20 ? C30 PEE 503 L 1 HETATM 26 C C31 PEE . . . JA 14 247.042 292.914 254.746 1 20 ? C31 PEE 503 L 1 HETATM 27 C C32 PEE . . . JA 14 247.091 294.386 254.25 1 20 ? C32 PEE 503 L 1 HETATM 28 C C33 PEE . . . JA 14 245.753 294.866 253.61 1 20 ? C33 PEE 503 L 1 HETATM 29 C C34 PEE . . . JA 14 245.512 296.353 253.888 1 20 ? C34 PEE 503 L 1 HETATM 30 C C35 PEE . . . JA 14 245.742 297.222 252.643 1 20 ? C35 PEE 503 L 1 HETATM 31 C C36 PEE . . . JA 14 246.243 298.65 253.004 1 20 ? C36 PEE 503 L 1 HETATM 32 C C37 PEE . . . JA 14 247.541 299.031 252.206 1 20 ? C37 PEE 503 L 1 HETATM 33 C C38 PEE . . . JA 14 247.868 300.56 252.248 1 20 ? C38 PEE 503 L 1 HETATM 34 C C39 PEE . . . JA 14 247.006 301.348 253.281 1 20 ? C39 PEE 503 L 1 HETATM 35 C C40 PEE . . . JA 14 247.815 302.495 253.947 1 20 ? C40 PEE 503 L 1 HETATM 36 C C41 PEE . . . JA 14 247.156 303.863 253.75 1 20 ? C41 PEE 503 L 1 HETATM 37 C C42 PEE . . . JA 14 248.025 305.014 254.281 1 20 ? C42 PEE 503 L 1 HETATM 38 C C43 PEE . . . JA 14 247.75 306.322 253.562 1 20 ? C43 PEE 503 L 1 HETATM 39 C C44 PEE . . . JA 14 248.11 307.528 254.407 1 20 ? C44 PEE 503 L 1 HETATM 40 C C45 PEE . . . JA 14 248.146 308.798 253.596 1 20 ? C45 PEE 503 L 1 HETATM 41 O O4 PEE . . . JA 14 249.773 296.058 255.654 1 20 ? O4 PEE 503 L 1 HETATM 42 O O5 PEE . . . JA 14 247.396 293.246 257.103 1 20 ? O5 PEE 503 L 1 HETATM 43 O O2 PEE . . . JA 14 249.695 294.348 257.219 1 20 ? O2 PEE 503 L 1 HETATM 44 O O3 PEE . . . JA 14 249.069 291.984 256.082 1 20 ? O3 PEE 503 L 1 HETATM 45 O O1P PEE . . . JA 14 249.032 292 262.072 1 20 ? O1P PEE 503 L 1 HETATM 46 O O2P PEE . . . JA 14 251.442 292.306 261.726 1 20 ? O2P PEE 503 L 1 HETATM 47 O O3P PEE . . . JA 14 249.858 292.921 259.868 1 20 ? O3P PEE 503 L 1 HETATM 48 O O4P PEE . . . JA 14 249.972 294.352 262.042 1 20 ? O4P PEE 503 L 1 HETATM 49 P P PEE . . . JA 14 250.078 292.878 261.443 1 20 ? P PEE 503 L 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #