data_5XTG # _model_server_result.job_id j_cpIPupsWd6zf3-T_dTXA _model_server_result.datetime_utc '2024-10-19 05:26:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xtg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5XTG # _exptl.entry_id 5XTG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTG _cell.length_a 70.082 _cell.length_b 70.082 _cell.length_c 119.181 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTG _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 282 n n PA O2A NAD sing 283 n n PA O5B NAD sing 284 n n PA O3 NAD sing 285 n n O2A HOA2 NAD sing 286 n n O5B C5B NAD sing 287 n n C5B C4B NAD sing 288 n n C5B H51A NAD sing 289 n n C5B H52A NAD sing 290 n n C4B O4B NAD sing 291 n n C4B C3B NAD sing 292 n n C4B H4B NAD sing 293 n n O4B C1B NAD sing 294 n n C3B O3B NAD sing 295 n n C3B C2B NAD sing 296 n n C3B H3B NAD sing 297 n n O3B HO3A NAD sing 298 n n C2B O2B NAD sing 299 n n C2B C1B NAD sing 300 n n C2B H2B NAD sing 301 n n O2B HO2A NAD sing 302 n n C1B N9A NAD sing 303 n n C1B H1B NAD sing 304 n n N9A C8A NAD sing 305 n y N9A C4A NAD sing 306 n y C8A N7A NAD doub 307 n y C8A H8A NAD sing 308 n n N7A C5A NAD sing 309 n y C5A C6A NAD sing 310 n y C5A C4A NAD doub 311 n y C6A N6A NAD sing 312 n n C6A N1A NAD doub 313 n y N6A H61A NAD sing 314 n n N6A H62A NAD sing 315 n n N1A C2A NAD sing 316 n y C2A N3A NAD doub 317 n y C2A H2A NAD sing 318 n n N3A C4A NAD sing 319 n y O3 PN NAD sing 320 n n PN O1N NAD doub 321 n n PN O2N NAD sing 322 n n PN O5D NAD sing 323 n n O5D C5D NAD sing 324 n n C5D C4D NAD sing 325 n n C5D H51N NAD sing 326 n n C5D H52N NAD sing 327 n n C4D O4D NAD sing 328 n n C4D C3D NAD sing 329 n n C4D H4D NAD sing 330 n n O4D C1D NAD sing 331 n n C3D O3D NAD sing 332 n n C3D C2D NAD sing 333 n n C3D H3D NAD sing 334 n n O3D HO3N NAD sing 335 n n C2D O2D NAD sing 336 n n C2D C1D NAD sing 337 n n C2D H2D NAD sing 338 n n O2D HO2N NAD sing 339 n n C1D N1N NAD sing 340 n n C1D H1D NAD sing 341 n n N1N C2N NAD sing 342 n y N1N C6N NAD doub 343 n y C2N C3N NAD doub 344 n y C2N H2N NAD sing 345 n n C3N C7N NAD sing 346 n n C3N C4N NAD sing 347 n y C7N O7N NAD doub 348 n n C7N N7N NAD sing 349 n n N7N H71N NAD sing 350 n n N7N H72N NAD sing 351 n n C4N C5N NAD doub 352 n y C4N H4N NAD sing 353 n n C5N C6N NAD sing 354 n y C5N H5N NAD sing 355 n n C6N H6N NAD sing 356 n n # _atom_sites.entry_id 5XTG _atom_sites.fract_transf_matrix[1][1] 0.014269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014269 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD B 1 301 1 NAD NAD . C 3 CIT B 1 302 1 CIT CIT . D 4 BPY B 1 303 1278 BPY BPY . E 5 HOH B 1 401 16 HOH HOH . E 5 HOH B 2 402 27 HOH HOH . E 5 HOH B 3 403 22 HOH HOH . E 5 HOH B 4 404 3 HOH HOH . E 5 HOH B 5 405 9 HOH HOH . E 5 HOH B 6 406 11 HOH HOH . E 5 HOH B 7 407 29 HOH HOH . E 5 HOH B 8 408 34 HOH HOH . E 5 HOH B 9 409 8 HOH HOH . E 5 HOH B 10 410 1 HOH HOH . E 5 HOH B 11 411 30 HOH HOH . E 5 HOH B 12 412 2 HOH HOH . E 5 HOH B 13 413 17 HOH HOH . E 5 HOH B 14 414 25 HOH HOH . E 5 HOH B 15 415 5 HOH HOH . E 5 HOH B 16 416 24 HOH HOH . E 5 HOH B 17 417 19 HOH HOH . E 5 HOH B 18 418 14 HOH HOH . E 5 HOH B 19 419 6 HOH HOH . E 5 HOH B 20 420 15 HOH HOH . E 5 HOH B 21 421 20 HOH HOH . E 5 HOH B 22 422 26 HOH HOH . E 5 HOH B 23 423 28 HOH HOH . E 5 HOH B 24 424 18 HOH HOH . E 5 HOH B 25 425 12 HOH HOH . E 5 HOH B 26 426 13 HOH HOH . E 5 HOH B 27 427 31 HOH HOH . E 5 HOH B 28 428 4 HOH HOH . E 5 HOH B 29 429 23 HOH HOH . E 5 HOH B 30 430 7 HOH HOH . E 5 HOH B 31 431 32 HOH HOH . E 5 HOH B 32 432 21 HOH HOH . E 5 HOH B 33 433 10 HOH HOH . E 5 HOH B 34 434 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 19.561 3.368 18.671 1 81.97 ? PA NAD 301 B 1 HETATM 2 O O1A NAD . . . B 2 20.14 1.976 18.997 1 101.71 ? O1A NAD 301 B 1 HETATM 3 O O2A NAD . . . B 2 20.617 4.374 18.531 1 70.29 ? O2A NAD 301 B 1 HETATM 4 O O5B NAD . . . B 2 18.517 3.733 19.846 1 89.68 ? O5B NAD 301 B 1 HETATM 5 C C5B NAD . . . B 2 17.455 4.662 19.642 1 79.4 ? C5B NAD 301 B 1 HETATM 6 C C4B NAD . . . B 2 17.62 5.978 20.472 1 78.21 ? C4B NAD 301 B 1 HETATM 7 O O4B NAD . . . B 2 16.498 6.166 21.156 1 69.45 ? O4B NAD 301 B 1 HETATM 8 C C3B NAD . . . B 2 18.756 5.942 21.548 1 75.99 ? C3B NAD 301 B 1 HETATM 9 O O3B NAD . . . B 2 19.342 7.153 21.751 1 68.57 ? O3B NAD 301 B 1 HETATM 10 C C2B NAD . . . B 2 17.998 5.511 22.823 1 70.64 ? C2B NAD 301 B 1 HETATM 11 O O2B NAD . . . B 2 18.809 5.809 24.075 1 65.6 ? O2B NAD 301 B 1 HETATM 12 C C1B NAD . . . B 2 16.886 6.227 22.723 1 70.02 ? C1B NAD 301 B 1 HETATM 13 N N9A NAD . . . B 2 15.838 5.7 23.624 1 65.85 ? N9A NAD 301 B 1 HETATM 14 C C8A NAD . . . B 2 15.414 4.434 23.756 1 59.08 ? C8A NAD 301 B 1 HETATM 15 N N7A NAD . . . B 2 14.483 4.408 24.72 1 57.75 ? N7A NAD 301 B 1 HETATM 16 C C5A NAD . . . B 2 14.349 5.669 25.201 1 61.91 ? C5A NAD 301 B 1 HETATM 17 C C6A NAD . . . B 2 13.543 6.21 26.19 1 52.31 ? C6A NAD 301 B 1 HETATM 18 N N6A NAD . . . B 2 12.632 5.406 26.912 1 53.77 ? N6A NAD 301 B 1 HETATM 19 N N1A NAD . . . B 2 13.574 7.501 26.503 1 54.57 ? N1A NAD 301 B 1 HETATM 20 C C2A NAD . . . B 2 14.42 8.317 25.809 1 57.9 ? C2A NAD 301 B 1 HETATM 21 N N3A NAD . . . B 2 15.215 7.789 24.823 1 53.79 ? N3A NAD 301 B 1 HETATM 22 C C4A NAD . . . B 2 15.177 6.47 24.529 1 59.21 ? C4A NAD 301 B 1 HETATM 23 O O3 NAD . . . B 2 18.756 3.214 17.247 1 93.95 ? O3 NAD 301 B 1 HETATM 24 P PN NAD . . . B 2 18.604 4.229 15.912 1 81.62 ? PN NAD 301 B 1 HETATM 25 O O1N NAD . . . B 2 18.993 3.451 14.692 1 93.3 ? O1N NAD 301 B 1 HETATM 26 O O2N NAD . . . B 2 19.34 5.55 15.888 1 75.51 ? O2N NAD 301 B 1 HETATM 27 O O5D NAD . . . B 2 16.935 4.439 15.822 1 97.92 ? O5D NAD 301 B 1 HETATM 28 C C5D NAD . . . B 2 16.198 5.629 15.926 1 83.26 ? C5D NAD 301 B 1 HETATM 29 C C4D NAD . . . B 2 14.817 5.239 15.267 1 84.51 ? C4D NAD 301 B 1 HETATM 30 O O4D NAD . . . B 2 15.051 4.672 14.091 1 88.6 ? O4D NAD 301 B 1 HETATM 31 C C3D NAD . . . B 2 13.996 4.189 16.093 1 75.88 ? C3D NAD 301 B 1 HETATM 32 O O3D NAD . . . B 2 12.683 4.551 16.209 1 56.86 ? O3D NAD 301 B 1 HETATM 33 C C2D NAD . . . B 2 14.091 2.882 15.265 1 83.46 ? C2D NAD 301 B 1 HETATM 34 O O2D NAD . . . B 2 12.885 2.088 15.584 1 71.42 ? O2D NAD 301 B 1 HETATM 35 C C1D NAD . . . B 2 14.175 3.284 13.985 1 86.06 ? C1D NAD 301 B 1 HETATM 36 N N1N NAD . . . B 2 14.733 2.269 13.036 1 86.6 ? N1N NAD 301 B 1 HETATM 37 C C2N NAD . . . B 2 16.084 2.041 12.826 1 81.52 ? C2N NAD 301 B 1 HETATM 38 C C3N NAD . . . B 2 16.512 1.037 11.923 1 80.33 ? C3N NAD 301 B 1 HETATM 39 C C7N NAD . . . B 2 18.009 0.756 11.695 1 86.34 ? C7N NAD 301 B 1 HETATM 40 O O7N NAD . . . B 2 18.366 -0.228 11.033 1 83.03 ? O7N NAD 301 B 1 HETATM 41 N N7N NAD . . . B 2 19 1.69 12.327 1 91.99 ? N7N NAD 301 B 1 HETATM 42 C C4N NAD . . . B 2 15.621 0.282 11.253 1 76.07 ? C4N NAD 301 B 1 HETATM 43 C C5N NAD . . . B 2 14.292 0.498 11.444 1 72.94 ? C5N NAD 301 B 1 HETATM 44 C C6N NAD . . . B 2 13.868 1.501 12.328 1 77.29 ? C6N NAD 301 B 1 HETATM 45 H H51A NAD . . . B 2 16.622 4.238 19.9 1 95.29 ? H51A NAD 301 B 1 HETATM 46 H H52A NAD . . . B 2 17.412 4.887 18.699 1 95.29 ? H52A NAD 301 B 1 HETATM 47 H H4B NAD . . . B 2 17.763 6.726 19.872 1 93.85 ? H4B NAD 301 B 1 HETATM 48 H H3B NAD . . . B 2 19.419 5.274 21.312 1 91.19 ? H3B NAD 301 B 1 HETATM 49 H HO3A NAD . . . B 2 20.183 7.053 21.822 1 82.29 ? HO3A NAD 301 B 1 HETATM 50 H H2B NAD . . . B 2 17.786 4.565 22.776 1 84.76 ? H2B NAD 301 B 1 HETATM 51 H HO2A NAD . . . B 2 19.091 5.08 24.409 1 78.71 ? HO2A NAD 301 B 1 HETATM 52 H H1B NAD . . . B 2 17.081 7.147 22.962 1 84.02 ? H1B NAD 301 B 1 HETATM 53 H H8A NAD . . . B 2 15.708 3.704 23.26 1 70.89 ? H8A NAD 301 B 1 HETATM 54 H H61A NAD . . . B 2 12.112 5.762 27.496 1 64.53 ? H61A NAD 301 B 1 HETATM 55 H H62A NAD . . . B 2 12.598 4.559 26.765 1 64.53 ? H62A NAD 301 B 1 HETATM 56 H H2A NAD . . . B 2 14.463 9.224 26.006 1 69.48 ? H2A NAD 301 B 1 HETATM 57 H H51N NAD . . . B 2 16.075 5.875 16.856 1 99.91 ? H51N NAD 301 B 1 HETATM 58 H H52N NAD . . . B 2 16.629 6.343 15.431 1 99.91 ? H52N NAD 301 B 1 HETATM 59 H H4D NAD . . . B 2 14.28 6.037 15.139 1 101.41 ? H4D NAD 301 B 1 HETATM 60 H H3D NAD . . . B 2 14.395 4.062 16.968 1 91.05 ? H3D NAD 301 B 1 HETATM 61 H HO3N NAD . . . B 2 12.582 5.03 16.904 1 68.24 ? HO3N NAD 301 B 1 HETATM 62 H H2D NAD . . . B 2 14.891 2.391 15.51 1 100.15 ? H2D NAD 301 B 1 HETATM 63 H HO2N NAD . . . B 2 13.042 1.592 16.256 1 85.7 ? HO2N NAD 301 B 1 HETATM 64 H H1D NAD . . . B 2 13.282 3.515 13.686 1 103.28 ? H1D NAD 301 B 1 HETATM 65 H H2N NAD . . . B 2 16.713 2.538 13.297 1 97.82 ? H2N NAD 301 B 1 HETATM 66 H H71N NAD . . . B 2 18.724 2.363 12.786 1 110.39 ? H71N NAD 301 B 1 HETATM 67 H H72N NAD . . . B 2 19.843 1.56 12.221 1 110.39 ? H72N NAD 301 B 1 HETATM 68 H H4N NAD . . . B 2 15.909 -0.369 10.654 1 91.28 ? H4N NAD 301 B 1 HETATM 69 H H5N NAD . . . B 2 13.667 -0.005 10.975 1 87.53 ? H5N NAD 301 B 1 HETATM 70 H H6N NAD . . . B 2 12.947 1.403 12.25 1 92.75 ? H6N NAD 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 70 #