data_5XTG # _model_server_result.job_id UJLDlftQZ4dfBap1W7hlZg _model_server_result.datetime_utc '2025-09-05 04:43:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xtg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5XTG # _exptl.entry_id 5XTG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTG _cell.length_a 70.082 _cell.length_b 70.082 _cell.length_c 119.181 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTG _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 95 n n C1 O2 CIT sing 96 n n C1 C2 CIT sing 97 n n O2 HO2 CIT sing 98 n n C2 C3 CIT sing 99 n n C2 H21 CIT sing 100 n n C2 H22 CIT sing 101 n n C3 O7 CIT sing 102 n n C3 C4 CIT sing 103 n n C3 C6 CIT sing 104 n n O7 HO7 CIT sing 105 n n C4 C5 CIT sing 106 n n C4 H41 CIT sing 107 n n C4 H42 CIT sing 108 n n C5 O3 CIT doub 109 n n C5 O4 CIT sing 110 n n O4 HO4 CIT sing 111 n n C6 O5 CIT doub 112 n n C6 O6 CIT sing 113 n n O6 HO6 CIT sing 114 n n # _atom_sites.entry_id 5XTG _atom_sites.fract_transf_matrix[1][1] 0.014269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014269 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD B 1 301 1 NAD NAD . C 3 CIT B 1 302 1 CIT CIT . D 4 BPY B 1 303 1278 BPY BPY . E 5 HOH B 1 401 16 HOH HOH . E 5 HOH B 2 402 27 HOH HOH . E 5 HOH B 3 403 22 HOH HOH . E 5 HOH B 4 404 3 HOH HOH . E 5 HOH B 5 405 9 HOH HOH . E 5 HOH B 6 406 11 HOH HOH . E 5 HOH B 7 407 29 HOH HOH . E 5 HOH B 8 408 34 HOH HOH . E 5 HOH B 9 409 8 HOH HOH . E 5 HOH B 10 410 1 HOH HOH . E 5 HOH B 11 411 30 HOH HOH . E 5 HOH B 12 412 2 HOH HOH . E 5 HOH B 13 413 17 HOH HOH . E 5 HOH B 14 414 25 HOH HOH . E 5 HOH B 15 415 5 HOH HOH . E 5 HOH B 16 416 24 HOH HOH . E 5 HOH B 17 417 19 HOH HOH . E 5 HOH B 18 418 14 HOH HOH . E 5 HOH B 19 419 6 HOH HOH . E 5 HOH B 20 420 15 HOH HOH . E 5 HOH B 21 421 20 HOH HOH . E 5 HOH B 22 422 26 HOH HOH . E 5 HOH B 23 423 28 HOH HOH . E 5 HOH B 24 424 18 HOH HOH . E 5 HOH B 25 425 12 HOH HOH . E 5 HOH B 26 426 13 HOH HOH . E 5 HOH B 27 427 31 HOH HOH . E 5 HOH B 28 428 4 HOH HOH . E 5 HOH B 29 429 23 HOH HOH . E 5 HOH B 30 430 7 HOH HOH . E 5 HOH B 31 431 32 HOH HOH . E 5 HOH B 32 432 21 HOH HOH . E 5 HOH B 33 433 10 HOH HOH . E 5 HOH B 34 434 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 24.108 25.277 28.642 1 71.8 ? C1 CIT 302 B 1 HETATM 2 O O1 CIT . . . C 3 23.661 26.429 28.361 1 70.34 ? O1 CIT 302 B 1 HETATM 3 O O2 CIT . . . C 3 24.959 25.203 29.553 1 59.68 ? O2 CIT 302 B 1 HETATM 4 C C2 CIT . . . C 3 23.643 24.021 27.894 1 69.86 ? C2 CIT 302 B 1 HETATM 5 C C3 CIT . . . C 3 24.099 22.645 28.475 1 60.58 ? C3 CIT 302 B 1 HETATM 6 O O7 CIT . . . C 3 23.672 22.519 29.813 1 66.01 ? O7 CIT 302 B 1 HETATM 7 C C4 CIT . . . C 3 23.257 21.483 27.976 1 73.19 ? C4 CIT 302 B 1 HETATM 8 C C5 CIT . . . C 3 23.231 20.426 29.067 1 65.71 ? C5 CIT 302 B 1 HETATM 9 O O3 CIT . . . C 3 24.311 19.815 29.164 1 53.25 ? O3 CIT 302 B 1 HETATM 10 O O4 CIT . . . C 3 22.222 20.13 29.814 1 63.48 ? O4 CIT 302 B 1 HETATM 11 C C6 CIT . . . C 3 25.603 22.36 28.247 1 58.36 ? C6 CIT 302 B 1 HETATM 12 O O5 CIT . . . C 3 26.338 23.348 28.113 1 59.93 ? O5 CIT 302 B 1 HETATM 13 O O6 CIT . . . C 3 26.145 21.199 28.153 1 49.52 ? O6 CIT 302 B 1 HETATM 14 H H21 CIT . . . C 3 23.993 24.089 26.864 1 83.83 ? H21 CIT 302 B 1 HETATM 15 H H22 CIT . . . C 3 22.554 24.031 27.857 1 83.83 ? H22 CIT 302 B 1 HETATM 16 H HO7 CIT . . . C 3 24.432 22.264 30.376 1 79.21 ? HO7 CIT 302 B 1 HETATM 17 H H41 CIT . . . C 3 22.244 21.821 27.756 1 87.83 ? H41 CIT 302 B 1 HETATM 18 H H42 CIT . . . C 3 23.69 21.071 27.065 1 87.83 ? H42 CIT 302 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #