data_5XUK # _model_server_result.job_id hUcTzMomDkNmGIWt18Dlmw _model_server_result.datetime_utc '2024-10-28 02:28:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xuk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5XUK # _exptl.entry_id 5XUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XUK _cell.length_a 93.34 _cell.length_b 93.34 _cell.length_c 43.02 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 46.67 -80.834811 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 93.34 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 5XUK _atom_sites.fract_transf_matrix[1][1] 0.010714 _atom_sites.fract_transf_matrix[1][2] 0.006185 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 201 1 COA COA . C 3 HOH A 1 301 18 HOH HOH . C 3 HOH A 2 302 20 HOH HOH . C 3 HOH A 3 303 15 HOH HOH . C 3 HOH A 4 304 27 HOH HOH . C 3 HOH A 5 305 25 HOH HOH . C 3 HOH A 6 306 19 HOH HOH . C 3 HOH A 7 307 12 HOH HOH . C 3 HOH A 8 308 22 HOH HOH . C 3 HOH A 9 309 6 HOH HOH . C 3 HOH A 10 310 9 HOH HOH . C 3 HOH A 11 311 16 HOH HOH . C 3 HOH A 12 312 1 HOH HOH . C 3 HOH A 13 313 14 HOH HOH . C 3 HOH A 14 314 3 HOH HOH . C 3 HOH A 15 315 10 HOH HOH . C 3 HOH A 16 316 4 HOH HOH . C 3 HOH A 17 317 21 HOH HOH . C 3 HOH A 18 318 2 HOH HOH . C 3 HOH A 19 319 11 HOH HOH . C 3 HOH A 20 320 8 HOH HOH . C 3 HOH A 21 321 5 HOH HOH . C 3 HOH A 22 322 13 HOH HOH . C 3 HOH A 23 323 17 HOH HOH . C 3 HOH A 24 324 7 HOH HOH . C 3 HOH A 25 325 23 HOH HOH . C 3 HOH A 26 326 24 HOH HOH . C 3 HOH A 27 327 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 55.594 -15.209 -12.012 1 50.61 ? N1A COA 201 A 1 HETATM 2 C C2A COA . . . B 2 54.47 -15.836 -12.421 1 49.48 ? C2A COA 201 A 1 HETATM 3 N N3A COA . . . B 2 53.975 -15.703 -13.664 1 46.65 ? N3A COA 201 A 1 HETATM 4 C C4A COA . . . B 2 54.583 -14.908 -14.56 1 49.02 ? C4A COA 201 A 1 HETATM 5 C C5A COA . . . B 2 55.808 -14.193 -14.18 1 47.12 ? C5A COA 201 A 1 HETATM 6 C C6A COA . . . B 2 56.307 -14.393 -12.808 1 50.37 ? C6A COA 201 A 1 HETATM 7 N N6A COA . . . B 2 57.436 -13.779 -12.367 1 53.87 ? N6A COA 201 A 1 HETATM 8 N N7A COA . . . B 2 56.188 -13.485 -15.256 1 50.43 ? N7A COA 201 A 1 HETATM 9 C C8A COA . . . B 2 55.302 -13.723 -16.261 1 51.24 ? C8A COA 201 A 1 HETATM 10 N N9A COA . . . B 2 54.335 -14.572 -15.822 1 52.15 ? N9A COA 201 A 1 HETATM 11 C C1B COA . . . B 2 53.181 -15.04 -16.597 1 51 ? C1B COA 201 A 1 HETATM 12 C C2B COA . . . B 2 52.409 -13.834 -17.144 1 51.34 ? C2B COA 201 A 1 HETATM 13 O O2B COA . . . B 2 51.018 -13.893 -16.828 1 54.79 ? O2B COA 201 A 1 HETATM 14 C C3B COA . . . B 2 52.579 -13.901 -18.643 1 53.22 ? C3B COA 201 A 1 HETATM 15 O O3B COA . . . B 2 51.401 -13.582 -19.378 1 59.54 ? O3B COA 201 A 1 HETATM 16 P P3B COA . . . B 2 50.908 -12.052 -19.62 1 65.6 ? P3B COA 201 A 1 HETATM 17 O O7A COA . . . B 2 52.19 -11.248 -19.706 1 65.32 ? O7A COA 201 A 1 HETATM 18 O O8A COA . . . B 2 50.2 -12.094 -20.949 1 58.4 ? O8A COA 201 A 1 HETATM 19 O O9A COA . . . B 2 50.041 -11.807 -18.398 1 63.26 ? O9A COA 201 A 1 HETATM 20 C C4B COA . . . B 2 52.931 -15.352 -18.852 1 54.69 ? C4B COA 201 A 1 HETATM 21 O O4B COA . . . B 2 53.653 -15.792 -17.704 1 52.1 ? O4B COA 201 A 1 HETATM 22 C C5B COA . . . B 2 53.731 -15.571 -20.113 1 55.85 ? C5B COA 201 A 1 HETATM 23 O O5B COA . . . B 2 53.187 -16.766 -20.626 1 62.18 ? O5B COA 201 A 1 HETATM 24 P P1A COA . . . B 2 54.067 -17.843 -21.371 1 56.03 ? P1A COA 201 A 1 HETATM 25 O O1A COA . . . B 2 54.12 -17.293 -22.781 1 61.13 ? O1A COA 201 A 1 HETATM 26 O O2A COA . . . B 2 53.585 -19.248 -21.103 1 60.3 ? O2A COA 201 A 1 HETATM 27 O O3A COA . . . B 2 55.421 -17.719 -20.553 1 73.46 ? O3A COA 201 A 1 HETATM 28 P P2A COA . . . B 2 56.803 -18.194 -21.206 1 91.25 ? P2A COA 201 A 1 HETATM 29 O O4A COA . . . B 2 56.91 -19.711 -21.121 1 87.61 ? O4A COA 201 A 1 HETATM 30 O O5A COA . . . B 2 56.925 -17.51 -22.556 1 89.1 ? O5A COA 201 A 1 HETATM 31 O O6A COA . . . B 2 57.823 -17.488 -20.162 1 94.76 ? O6A COA 201 A 1 HETATM 32 C CBP COA . . . B 2 58.716 -16.734 -18.004 1 95.19 ? CBP COA 201 A 1 HETATM 33 C CCP COA . . . B 2 57.471 -17.069 -18.83 1 92.49 ? CCP COA 201 A 1 HETATM 34 C CDP COA . . . B 2 58.537 -15.401 -17.294 1 94.89 ? CDP COA 201 A 1 HETATM 35 C CEP COA . . . B 2 58.925 -17.813 -16.95 1 89.82 ? CEP COA 201 A 1 HETATM 36 C CAP COA . . . B 2 59.918 -16.63 -18.962 1 100.93 ? CAP COA 201 A 1 HETATM 37 O OAP COA . . . B 2 59.932 -15.334 -19.57 1 99.53 ? OAP COA 201 A 1 HETATM 38 C C9P COA . . . B 2 61.252 -16.855 -18.318 1 107.21 ? C9P COA 201 A 1 HETATM 39 O O9P COA . . . B 2 61.527 -16.344 -17.243 1 113.55 ? O9P COA 201 A 1 HETATM 40 N N8P COA . . . B 2 62.093 -17.621 -19.016 1 108.06 ? N8P COA 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #