data_5XUW # _model_server_result.job_id U6ERLTSZ_u_SgsxZcd_UZA _model_server_result.datetime_utc '2024-12-02 14:38:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xuw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 5XUW # _exptl.entry_id 5XUW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XUW _cell.length_a 57.543 _cell.length_b 57.543 _cell.length_c 73.359 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XUW _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 65 A CYS 65 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 B SG CYS 6 B CYS 6 1_555 B SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf6 B SG CYS 30 B CYS 30 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf7 B SG CYS 65 B CYS 65 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf8 B SG CYS 76 B CYS 76 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A O LYS 82 A LYS 82 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A OD1 ASP 85 A ASP 85 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A O ASN 87 A ASN 87 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc4 A OD1 ASP 90 A ASP 90 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc5 A OD1 ASP 91 A ASP 91 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc6 C CA CA . A CA 201 1_555 E O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc7 C CA CA . A CA 201 1_555 E O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc8 B O LYS 82 B LYS 82 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc9 B OD2 ASP 85 B ASP 85 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc10 B O ASN 87 B ASN 87 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc11 B OD1 ASP 90 B ASP 90 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc12 B OD1 ASP 91 B ASP 91 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc13 D CA CA . B CA 201 1_555 F O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc14 D CA CA . B CA 201 1_555 F O HOH . B HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XUW _atom_sites.fract_transf_matrix[1][1] 0.017378 _atom_sites.fract_transf_matrix[1][2] 0.010033 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 201 1 CA CA . D 2 CA B 1 201 1 CA CA . E 3 HOH A 1 301 54 HOH HOH . E 3 HOH A 2 302 11 HOH HOH . E 3 HOH A 3 303 56 HOH HOH . E 3 HOH A 4 304 121 HOH HOH . E 3 HOH A 5 305 60 HOH HOH . E 3 HOH A 6 306 88 HOH HOH . E 3 HOH A 7 307 45 HOH HOH . E 3 HOH A 8 308 119 HOH HOH . E 3 HOH A 9 309 19 HOH HOH . E 3 HOH A 10 310 25 HOH HOH . E 3 HOH A 11 311 107 HOH HOH . E 3 HOH A 12 312 49 HOH HOH . E 3 HOH A 13 313 81 HOH HOH . E 3 HOH A 14 314 62 HOH HOH . E 3 HOH A 15 315 65 HOH HOH . E 3 HOH A 16 316 131 HOH HOH . E 3 HOH A 17 317 55 HOH HOH . E 3 HOH A 18 318 86 HOH HOH . E 3 HOH A 19 319 63 HOH HOH . E 3 HOH A 20 320 82 HOH HOH . E 3 HOH A 21 321 32 HOH HOH . E 3 HOH A 22 322 30 HOH HOH . E 3 HOH A 23 323 24 HOH HOH . E 3 HOH A 24 324 47 HOH HOH . E 3 HOH A 25 325 77 HOH HOH . E 3 HOH A 26 326 18 HOH HOH . E 3 HOH A 27 327 28 HOH HOH . E 3 HOH A 28 328 71 HOH HOH . E 3 HOH A 29 329 4 HOH HOH . E 3 HOH A 30 330 113 HOH HOH . E 3 HOH A 31 331 114 HOH HOH . E 3 HOH A 32 332 42 HOH HOH . E 3 HOH A 33 333 147 HOH HOH . E 3 HOH A 34 334 73 HOH HOH . E 3 HOH A 35 335 123 HOH HOH . E 3 HOH A 36 336 99 HOH HOH . E 3 HOH A 37 337 51 HOH HOH . E 3 HOH A 38 338 135 HOH HOH . E 3 HOH A 39 339 139 HOH HOH . E 3 HOH A 40 340 145 HOH HOH . E 3 HOH A 41 341 110 HOH HOH . E 3 HOH A 42 342 8 HOH HOH . E 3 HOH A 43 343 97 HOH HOH . E 3 HOH A 44 344 104 HOH HOH . E 3 HOH A 45 345 67 HOH HOH . E 3 HOH A 46 346 6 HOH HOH . E 3 HOH A 47 347 2 HOH HOH . E 3 HOH A 48 348 23 HOH HOH . E 3 HOH A 49 349 50 HOH HOH . E 3 HOH A 50 350 70 HOH HOH . E 3 HOH A 51 351 26 HOH HOH . E 3 HOH A 52 352 41 HOH HOH . E 3 HOH A 53 353 35 HOH HOH . E 3 HOH A 54 354 91 HOH HOH . E 3 HOH A 55 355 22 HOH HOH . E 3 HOH A 56 356 116 HOH HOH . E 3 HOH A 57 357 58 HOH HOH . E 3 HOH A 58 358 120 HOH HOH . E 3 HOH A 59 359 7 HOH HOH . E 3 HOH A 60 360 17 HOH HOH . E 3 HOH A 61 361 105 HOH HOH . E 3 HOH A 62 362 15 HOH HOH . E 3 HOH A 63 363 138 HOH HOH . E 3 HOH A 64 364 94 HOH HOH . E 3 HOH A 65 365 125 HOH HOH . E 3 HOH A 66 366 36 HOH HOH . E 3 HOH A 67 367 152 HOH HOH . E 3 HOH A 68 368 124 HOH HOH . E 3 HOH A 69 369 122 HOH HOH . E 3 HOH A 70 370 136 HOH HOH . E 3 HOH A 71 371 31 HOH HOH . E 3 HOH A 72 372 84 HOH HOH . E 3 HOH A 73 373 83 HOH HOH . E 3 HOH A 74 374 117 HOH HOH . E 3 HOH A 75 375 90 HOH HOH . E 3 HOH A 76 376 126 HOH HOH . E 3 HOH A 77 377 101 HOH HOH . F 3 HOH B 1 301 29 HOH HOH . F 3 HOH B 2 302 103 HOH HOH . F 3 HOH B 3 303 140 HOH HOH . F 3 HOH B 4 304 64 HOH HOH . F 3 HOH B 5 305 59 HOH HOH . F 3 HOH B 6 306 12 HOH HOH . F 3 HOH B 7 307 100 HOH HOH . F 3 HOH B 8 308 134 HOH HOH . F 3 HOH B 9 309 13 HOH HOH . F 3 HOH B 10 310 72 HOH HOH . F 3 HOH B 11 311 75 HOH HOH . F 3 HOH B 12 312 130 HOH HOH . F 3 HOH B 13 313 141 HOH HOH . F 3 HOH B 14 314 38 HOH HOH . F 3 HOH B 15 315 39 HOH HOH . F 3 HOH B 16 316 143 HOH HOH . F 3 HOH B 17 317 106 HOH HOH . F 3 HOH B 18 318 76 HOH HOH . F 3 HOH B 19 319 57 HOH HOH . F 3 HOH B 20 320 34 HOH HOH . F 3 HOH B 21 321 153 HOH HOH . F 3 HOH B 22 322 46 HOH HOH . F 3 HOH B 23 323 85 HOH HOH . F 3 HOH B 24 324 80 HOH HOH . F 3 HOH B 25 325 3 HOH HOH . F 3 HOH B 26 326 115 HOH HOH . F 3 HOH B 27 327 154 HOH HOH . F 3 HOH B 28 328 21 HOH HOH . F 3 HOH B 29 329 43 HOH HOH . F 3 HOH B 30 330 92 HOH HOH . F 3 HOH B 31 331 20 HOH HOH . F 3 HOH B 32 332 74 HOH HOH . F 3 HOH B 33 333 53 HOH HOH . F 3 HOH B 34 334 149 HOH HOH . F 3 HOH B 35 335 127 HOH HOH . F 3 HOH B 36 336 146 HOH HOH . F 3 HOH B 37 337 52 HOH HOH . F 3 HOH B 38 338 151 HOH HOH . F 3 HOH B 39 339 112 HOH HOH . F 3 HOH B 40 340 133 HOH HOH . F 3 HOH B 41 341 5 HOH HOH . F 3 HOH B 42 342 9 HOH HOH . F 3 HOH B 43 343 44 HOH HOH . F 3 HOH B 44 344 132 HOH HOH . F 3 HOH B 45 345 150 HOH HOH . F 3 HOH B 46 346 79 HOH HOH . F 3 HOH B 47 347 68 HOH HOH . F 3 HOH B 48 348 142 HOH HOH . F 3 HOH B 49 349 111 HOH HOH . F 3 HOH B 50 350 1 HOH HOH . F 3 HOH B 51 351 33 HOH HOH . F 3 HOH B 52 352 148 HOH HOH . F 3 HOH B 53 353 10 HOH HOH . F 3 HOH B 54 354 27 HOH HOH . F 3 HOH B 55 355 48 HOH HOH . F 3 HOH B 56 356 128 HOH HOH . F 3 HOH B 57 357 40 HOH HOH . F 3 HOH B 58 358 14 HOH HOH . F 3 HOH B 59 359 16 HOH HOH . F 3 HOH B 60 360 66 HOH HOH . F 3 HOH B 61 361 78 HOH HOH . F 3 HOH B 62 362 137 HOH HOH . F 3 HOH B 63 363 96 HOH HOH . F 3 HOH B 64 364 87 HOH HOH . F 3 HOH B 65 365 98 HOH HOH . F 3 HOH B 66 366 61 HOH HOH . F 3 HOH B 67 367 37 HOH HOH . F 3 HOH B 68 368 109 HOH HOH . F 3 HOH B 69 369 69 HOH HOH . F 3 HOH B 70 370 89 HOH HOH . F 3 HOH B 71 371 118 HOH HOH . F 3 HOH B 72 372 102 HOH HOH . F 3 HOH B 73 373 155 HOH HOH . F 3 HOH B 74 374 144 HOH HOH . F 3 HOH B 75 375 95 HOH HOH . F 3 HOH B 76 376 93 HOH HOH . F 3 HOH B 77 377 129 HOH HOH . F 3 HOH B 78 378 108 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -24.713 _atom_site.Cartn_y 5.034 _atom_site.Cartn_z -61.523 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #