data_5XVQ # _model_server_result.job_id AuJ5mJUG3Gu7Gp2Bn6RQJw _model_server_result.datetime_utc '2024-10-20 01:30:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5XVQ # _exptl.entry_id 5XVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.159 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-carbamoyl-1-methylpyridin-1-ium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.97 _cell.angle_gamma 90 _cell.entry_id 5XVQ _cell.length_a 42.071 _cell.length_b 65.028 _cell.length_c 91.144 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C7 H9 N2 O 1' _chem_comp.formula_weight 137.159 _chem_comp.id 8GC _chem_comp.mon_nstd_flag . _chem_comp.name 3-carbamoyl-1-methylpyridin-1-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-methylnicotinamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 8GC doub 1 n y C7 N8 8GC sing 2 n y C6 C5 8GC sing 3 n y C9 N8 8GC sing 4 n n N8 C10 8GC doub 5 n y C5 C4 8GC doub 6 n y C10 C4 8GC sing 7 n y C4 C2 8GC sing 8 n n C2 N3 8GC sing 9 n n C2 O1 8GC doub 10 n n C5 H1 8GC sing 11 n n C6 H2 8GC sing 12 n n C7 H3 8GC sing 13 n n C9 H4 8GC sing 14 n n C9 H5 8GC sing 15 n n C9 H6 8GC sing 16 n n C10 H7 8GC sing 17 n n N3 H8 8GC sing 18 n n N3 H9 8GC sing 19 n n # _atom_sites.entry_id 5XVQ _atom_sites.fract_transf_matrix[1][1] 0.023769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.00001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 3 8GC A 1 302 302 8GC MNA . E 4 GOL A 1 303 2 GOL GOL . F 2 SAH B 1 301 301 SAH SAH . G 3 8GC B 1 302 302 8GC MNA . H 4 GOL B 1 303 1 GOL GOL . I 5 HOH A 1 401 128 HOH HOH . I 5 HOH A 2 402 47 HOH HOH . I 5 HOH A 3 403 68 HOH HOH . I 5 HOH A 4 404 131 HOH HOH . I 5 HOH A 5 405 5 HOH HOH . I 5 HOH A 6 406 126 HOH HOH . I 5 HOH A 7 407 110 HOH HOH . I 5 HOH A 8 408 3 HOH HOH . I 5 HOH A 9 409 53 HOH HOH . I 5 HOH A 10 410 123 HOH HOH . I 5 HOH A 11 411 74 HOH HOH . I 5 HOH A 12 412 11 HOH HOH . I 5 HOH A 13 413 56 HOH HOH . I 5 HOH A 14 414 94 HOH HOH . I 5 HOH A 15 415 72 HOH HOH . I 5 HOH A 16 416 45 HOH HOH . I 5 HOH A 17 417 9 HOH HOH . I 5 HOH A 18 418 65 HOH HOH . I 5 HOH A 19 419 17 HOH HOH . I 5 HOH A 20 420 150 HOH HOH . I 5 HOH A 21 421 58 HOH HOH . I 5 HOH A 22 422 52 HOH HOH . I 5 HOH A 23 423 173 HOH HOH . I 5 HOH A 24 424 71 HOH HOH . I 5 HOH A 25 425 70 HOH HOH . I 5 HOH A 26 426 121 HOH HOH . I 5 HOH A 27 427 42 HOH HOH . I 5 HOH A 28 428 48 HOH HOH . I 5 HOH A 29 429 1 HOH HOH . I 5 HOH A 30 430 14 HOH HOH . I 5 HOH A 31 431 64 HOH HOH . I 5 HOH A 32 432 8 HOH HOH . I 5 HOH A 33 433 10 HOH HOH . I 5 HOH A 34 434 171 HOH HOH . I 5 HOH A 35 435 179 HOH HOH . I 5 HOH A 36 436 149 HOH HOH . I 5 HOH A 37 437 44 HOH HOH . I 5 HOH A 38 438 54 HOH HOH . I 5 HOH A 39 439 147 HOH HOH . I 5 HOH A 40 440 159 HOH HOH . I 5 HOH A 41 441 55 HOH HOH . I 5 HOH A 42 442 129 HOH HOH . I 5 HOH A 43 443 119 HOH HOH . I 5 HOH A 44 444 108 HOH HOH . I 5 HOH A 45 445 157 HOH HOH . I 5 HOH A 46 446 57 HOH HOH . I 5 HOH A 47 447 100 HOH HOH . I 5 HOH A 48 448 153 HOH HOH . I 5 HOH A 49 449 107 HOH HOH . I 5 HOH A 50 450 66 HOH HOH . I 5 HOH A 51 451 181 HOH HOH . I 5 HOH A 52 452 156 HOH HOH . I 5 HOH A 53 453 63 HOH HOH . I 5 HOH A 54 454 7 HOH HOH . I 5 HOH A 55 455 51 HOH HOH . I 5 HOH A 56 456 120 HOH HOH . I 5 HOH A 57 457 12 HOH HOH . I 5 HOH A 58 458 67 HOH HOH . I 5 HOH A 59 459 167 HOH HOH . I 5 HOH A 60 460 50 HOH HOH . I 5 HOH A 61 461 130 HOH HOH . I 5 HOH A 62 462 60 HOH HOH . I 5 HOH A 63 463 49 HOH HOH . I 5 HOH A 64 464 124 HOH HOH . I 5 HOH A 65 465 61 HOH HOH . I 5 HOH A 66 466 185 HOH HOH . I 5 HOH A 67 467 160 HOH HOH . I 5 HOH A 68 468 4 HOH HOH . I 5 HOH A 69 469 151 HOH HOH . I 5 HOH A 70 470 59 HOH HOH . I 5 HOH A 71 471 2 HOH HOH . I 5 HOH A 72 472 155 HOH HOH . I 5 HOH A 73 473 13 HOH HOH . I 5 HOH A 74 474 154 HOH HOH . I 5 HOH A 75 475 191 HOH HOH . I 5 HOH A 76 476 117 HOH HOH . I 5 HOH A 77 477 62 HOH HOH . I 5 HOH A 78 478 125 HOH HOH . I 5 HOH A 79 479 180 HOH HOH . I 5 HOH A 80 480 116 HOH HOH . I 5 HOH A 81 481 152 HOH HOH . I 5 HOH A 82 482 106 HOH HOH . I 5 HOH A 83 483 118 HOH HOH . I 5 HOH A 84 484 69 HOH HOH . I 5 HOH A 85 485 183 HOH HOH . I 5 HOH A 86 486 146 HOH HOH . I 5 HOH A 87 487 184 HOH HOH . I 5 HOH A 88 488 122 HOH HOH . I 5 HOH A 89 489 127 HOH HOH . I 5 HOH A 90 490 161 HOH HOH . I 5 HOH A 91 491 182 HOH HOH . I 5 HOH A 92 492 148 HOH HOH . I 5 HOH A 93 493 15 HOH HOH . I 5 HOH A 94 494 190 HOH HOH . I 5 HOH A 95 495 172 HOH HOH . I 5 HOH A 96 496 168 HOH HOH . I 5 HOH A 97 497 96 HOH HOH . I 5 HOH A 98 498 192 HOH HOH . I 5 HOH A 99 499 158 HOH HOH . I 5 HOH A 100 500 46 HOH HOH . I 5 HOH A 101 501 6 HOH HOH . J 5 HOH B 1 401 40 HOH HOH . J 5 HOH B 2 402 135 HOH HOH . J 5 HOH B 3 403 113 HOH HOH . J 5 HOH B 4 404 73 HOH HOH . J 5 HOH B 5 405 109 HOH HOH . J 5 HOH B 6 406 142 HOH HOH . J 5 HOH B 7 407 165 HOH HOH . J 5 HOH B 8 408 34 HOH HOH . J 5 HOH B 9 409 77 HOH HOH . J 5 HOH B 10 410 84 HOH HOH . J 5 HOH B 11 411 112 HOH HOH . J 5 HOH B 12 412 140 HOH HOH . J 5 HOH B 13 413 90 HOH HOH . J 5 HOH B 14 414 141 HOH HOH . J 5 HOH B 15 415 18 HOH HOH . J 5 HOH B 16 416 19 HOH HOH . J 5 HOH B 17 417 111 HOH HOH . J 5 HOH B 18 418 31 HOH HOH . J 5 HOH B 19 419 162 HOH HOH . J 5 HOH B 20 420 32 HOH HOH . J 5 HOH B 21 421 79 HOH HOH . J 5 HOH B 22 422 134 HOH HOH . J 5 HOH B 23 423 102 HOH HOH . J 5 HOH B 24 424 35 HOH HOH . J 5 HOH B 25 425 170 HOH HOH . J 5 HOH B 26 426 144 HOH HOH . J 5 HOH B 27 427 75 HOH HOH . J 5 HOH B 28 428 28 HOH HOH . J 5 HOH B 29 429 23 HOH HOH . J 5 HOH B 30 430 93 HOH HOH . J 5 HOH B 31 431 16 HOH HOH . J 5 HOH B 32 432 20 HOH HOH . J 5 HOH B 33 433 78 HOH HOH . J 5 HOH B 34 434 187 HOH HOH . J 5 HOH B 35 435 115 HOH HOH . J 5 HOH B 36 436 91 HOH HOH . J 5 HOH B 37 437 88 HOH HOH . J 5 HOH B 38 438 83 HOH HOH . J 5 HOH B 39 439 188 HOH HOH . J 5 HOH B 40 440 36 HOH HOH . J 5 HOH B 41 441 21 HOH HOH . J 5 HOH B 42 442 43 HOH HOH . J 5 HOH B 43 443 104 HOH HOH . J 5 HOH B 44 444 26 HOH HOH . J 5 HOH B 45 445 97 HOH HOH . J 5 HOH B 46 446 80 HOH HOH . J 5 HOH B 47 447 39 HOH HOH . J 5 HOH B 48 448 81 HOH HOH . J 5 HOH B 49 449 92 HOH HOH . J 5 HOH B 50 450 163 HOH HOH . J 5 HOH B 51 451 22 HOH HOH . J 5 HOH B 52 452 138 HOH HOH . J 5 HOH B 53 453 24 HOH HOH . J 5 HOH B 54 454 98 HOH HOH . J 5 HOH B 55 455 37 HOH HOH . J 5 HOH B 56 456 89 HOH HOH . J 5 HOH B 57 457 38 HOH HOH . J 5 HOH B 58 458 137 HOH HOH . J 5 HOH B 59 459 82 HOH HOH . J 5 HOH B 60 460 25 HOH HOH . J 5 HOH B 61 461 166 HOH HOH . J 5 HOH B 62 462 176 HOH HOH . J 5 HOH B 63 463 164 HOH HOH . J 5 HOH B 64 464 87 HOH HOH . J 5 HOH B 65 465 85 HOH HOH . J 5 HOH B 66 466 101 HOH HOH . J 5 HOH B 67 467 132 HOH HOH . J 5 HOH B 68 468 143 HOH HOH . J 5 HOH B 69 469 27 HOH HOH . J 5 HOH B 70 470 41 HOH HOH . J 5 HOH B 71 471 145 HOH HOH . J 5 HOH B 72 472 33 HOH HOH . J 5 HOH B 73 473 105 HOH HOH . J 5 HOH B 74 474 99 HOH HOH . J 5 HOH B 75 475 169 HOH HOH . J 5 HOH B 76 476 174 HOH HOH . J 5 HOH B 77 477 178 HOH HOH . J 5 HOH B 78 478 175 HOH HOH . J 5 HOH B 79 479 86 HOH HOH . J 5 HOH B 80 480 76 HOH HOH . J 5 HOH B 81 481 30 HOH HOH . J 5 HOH B 82 482 136 HOH HOH . J 5 HOH B 83 483 29 HOH HOH . J 5 HOH B 84 484 103 HOH HOH . J 5 HOH B 85 485 139 HOH HOH . J 5 HOH B 86 486 177 HOH HOH . J 5 HOH B 87 487 95 HOH HOH . J 5 HOH B 88 488 133 HOH HOH . J 5 HOH B 89 489 186 HOH HOH . J 5 HOH B 90 490 114 HOH HOH . J 5 HOH B 91 491 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 8GC . . . D 3 23.63 -0.791 13.15 1 19.61 ? C2 8GC 302 A 1 HETATM 2 C C4 8GC . . . D 3 23.207 0.275 12.229 1 19.99 ? C4 8GC 302 A 1 HETATM 3 C C5 8GC . . . D 3 23.964 0.554 11.114 1 20.42 ? C5 8GC 302 A 1 HETATM 4 C C6 8GC . . . D 3 23.555 1.56 10.262 1 20.59 ? C6 8GC 302 A 1 HETATM 5 C C7 8GC . . . D 3 22.406 2.259 10.54 1 19.91 ? C7 8GC 302 A 1 HETATM 6 C C9 8GC . . . D 3 20.497 2.681 11.92 1 20.92 ? C9 8GC 302 A 1 HETATM 7 C C10 8GC . . . D 3 22.06 0.99 12.485 1 21.15 ? C10 8GC 302 A 1 HETATM 8 N N8 8GC . . . D 3 21.707 1.947 11.629 1 21.91 ? N8 8GC 302 A 1 HETATM 9 N N3 8GC . . . D 3 22.621 -1.281 13.933 1 18.25 ? N3 8GC 302 A 1 HETATM 10 O O1 8GC . . . D 3 24.792 -1.171 13.161 1 18.72 ? O1 8GC 302 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #