data_5XW1
#
_model_server_result.job_id            Eou6T_6yMqw2PBhE7kpk-Q 
_model_server_result.datetime_utc      '2025-03-04 03:54:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xw1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5XW1 
#
_exptl.entry_id    5XW1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5XW1 
_cell.length_a            83.165 
_cell.length_b            83.165 
_cell.length_c            135.232 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XW1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 15 A CYS 15 1_555 B SG CYS 12 B CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 33 A CYS 33 1_555 A SG CYS 49 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf3 A SG CYS 117 A CYS 117 1_555 B SG CYS 85 B CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 B SG CYS 58 B CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf5 B SG CYS 23 B CYS 156 1_555 B SG CYS 37 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf6 B SG CYS 48 B CYS 181 1_555 B SG CYS 72 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
covale ? covale1 C C ACE 1 C ACE 401 1_555 C N PRO 2 C PRO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
metalc ? metalc1 A OE1 GLU 60 A GLU 60 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc2 A O ASN 62 A ASN 62 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc3 A O VAL 65 A VAL 65 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc4 A OE1 GLU 67 A GLU 67 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc5 A OE2 GLU 70 A GLU 70 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc6 D CA CA . A CA 301 1_555 H O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XW1 
_atom_sites.fract_transf_matrix[1][1]    0.012024 
_atom_sites.fract_transf_matrix[1][2]    0.006942 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013884 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007395 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA A 1 301 300 CA CA . 
E 5 MPD B 1 301 1 MPD MPD . 
F 5 MPD B 1 302 2 MPD MPD . 
G 5 MPD B 1 303 3 MPD MPD . 
H 6 HOH A 1 401 203 HOH HOH . 
H 6 HOH A 2 402 195 HOH HOH . 
H 6 HOH A 3 403 115 HOH HOH . 
H 6 HOH A 4 404 81 HOH HOH . 
H 6 HOH A 5 405 84 HOH HOH . 
H 6 HOH A 6 406 153 HOH HOH . 
H 6 HOH A 7 407 80 HOH HOH . 
H 6 HOH A 8 408 27 HOH HOH . 
H 6 HOH A 9 409 8 HOH HOH . 
H 6 HOH A 10 410 28 HOH HOH . 
H 6 HOH A 11 411 162 HOH HOH . 
H 6 HOH A 12 412 182 HOH HOH . 
H 6 HOH A 13 413 24 HOH HOH . 
H 6 HOH A 14 414 144 HOH HOH . 
H 6 HOH A 15 415 62 HOH HOH . 
H 6 HOH A 16 416 55 HOH HOH . 
H 6 HOH A 17 417 39 HOH HOH . 
H 6 HOH A 18 418 3 HOH HOH . 
H 6 HOH A 19 419 168 HOH HOH . 
H 6 HOH A 20 420 120 HOH HOH . 
H 6 HOH A 21 421 87 HOH HOH . 
H 6 HOH A 22 422 169 HOH HOH . 
H 6 HOH A 23 423 147 HOH HOH . 
H 6 HOH A 24 424 158 HOH HOH . 
H 6 HOH A 25 425 132 HOH HOH . 
H 6 HOH A 26 426 66 HOH HOH . 
H 6 HOH A 27 427 82 HOH HOH . 
H 6 HOH A 28 428 26 HOH HOH . 
H 6 HOH A 29 429 189 HOH HOH . 
H 6 HOH A 30 430 5 HOH HOH . 
H 6 HOH A 31 431 33 HOH HOH . 
H 6 HOH A 32 432 29 HOH HOH . 
H 6 HOH A 33 433 89 HOH HOH . 
H 6 HOH A 34 434 124 HOH HOH . 
H 6 HOH A 35 435 123 HOH HOH . 
H 6 HOH A 36 436 192 HOH HOH . 
H 6 HOH A 37 437 37 HOH HOH . 
H 6 HOH A 38 438 64 HOH HOH . 
H 6 HOH A 39 439 216 HOH HOH . 
H 6 HOH A 40 440 11 HOH HOH . 
H 6 HOH A 41 441 4 HOH HOH . 
H 6 HOH A 42 442 71 HOH HOH . 
H 6 HOH A 43 443 34 HOH HOH . 
H 6 HOH A 44 444 180 HOH HOH . 
H 6 HOH A 45 445 185 HOH HOH . 
H 6 HOH A 46 446 45 HOH HOH . 
H 6 HOH A 47 447 131 HOH HOH . 
H 6 HOH A 48 448 61 HOH HOH . 
H 6 HOH A 49 449 10 HOH HOH . 
H 6 HOH A 50 450 36 HOH HOH . 
H 6 HOH A 51 451 91 HOH HOH . 
H 6 HOH A 52 452 17 HOH HOH . 
H 6 HOH A 53 453 59 HOH HOH . 
H 6 HOH A 54 454 40 HOH HOH . 
H 6 HOH A 55 455 93 HOH HOH . 
H 6 HOH A 56 456 106 HOH HOH . 
H 6 HOH A 57 457 145 HOH HOH . 
H 6 HOH A 58 458 107 HOH HOH . 
H 6 HOH A 59 459 50 HOH HOH . 
H 6 HOH A 60 460 48 HOH HOH . 
H 6 HOH A 61 461 173 HOH HOH . 
H 6 HOH A 62 462 209 HOH HOH . 
H 6 HOH A 63 463 72 HOH HOH . 
H 6 HOH A 64 464 21 HOH HOH . 
H 6 HOH A 65 465 108 HOH HOH . 
H 6 HOH A 66 466 130 HOH HOH . 
H 6 HOH A 67 467 20 HOH HOH . 
H 6 HOH A 68 468 165 HOH HOH . 
H 6 HOH A 69 469 116 HOH HOH . 
H 6 HOH A 70 470 156 HOH HOH . 
H 6 HOH A 71 471 149 HOH HOH . 
H 6 HOH A 72 472 175 HOH HOH . 
H 6 HOH A 73 473 79 HOH HOH . 
H 6 HOH A 74 474 174 HOH HOH . 
H 6 HOH A 75 475 60 HOH HOH . 
H 6 HOH A 76 476 187 HOH HOH . 
H 6 HOH A 77 477 90 HOH HOH . 
H 6 HOH A 78 478 98 HOH HOH . 
H 6 HOH A 79 479 86 HOH HOH . 
H 6 HOH A 80 480 219 HOH HOH . 
H 6 HOH A 81 481 83 HOH HOH . 
H 6 HOH A 82 482 142 HOH HOH . 
H 6 HOH A 83 483 49 HOH HOH . 
H 6 HOH A 84 484 35 HOH HOH . 
H 6 HOH A 85 485 139 HOH HOH . 
H 6 HOH A 86 486 104 HOH HOH . 
H 6 HOH A 87 487 199 HOH HOH . 
H 6 HOH A 88 488 73 HOH HOH . 
H 6 HOH A 89 489 194 HOH HOH . 
H 6 HOH A 90 490 95 HOH HOH . 
H 6 HOH A 91 491 191 HOH HOH . 
H 6 HOH A 92 492 190 HOH HOH . 
H 6 HOH A 93 493 186 HOH HOH . 
H 6 HOH A 94 494 38 HOH HOH . 
H 6 HOH A 95 495 134 HOH HOH . 
H 6 HOH A 96 496 88 HOH HOH . 
H 6 HOH A 97 497 177 HOH HOH . 
H 6 HOH A 98 498 184 HOH HOH . 
H 6 HOH A 99 499 196 HOH HOH . 
H 6 HOH A 100 500 117 HOH HOH . 
H 6 HOH A 101 501 111 HOH HOH . 
H 6 HOH A 102 502 126 HOH HOH . 
H 6 HOH A 103 503 74 HOH HOH . 
H 6 HOH A 104 504 128 HOH HOH . 
H 6 HOH A 105 505 101 HOH HOH . 
H 6 HOH A 106 506 100 HOH HOH . 
H 6 HOH A 107 507 125 HOH HOH . 
H 6 HOH A 108 508 206 HOH HOH . 
H 6 HOH A 109 509 122 HOH HOH . 
H 6 HOH A 110 510 129 HOH HOH . 
H 6 HOH A 111 511 193 HOH HOH . 
H 6 HOH A 112 512 160 HOH HOH . 
H 6 HOH A 113 513 176 HOH HOH . 
H 6 HOH A 114 514 212 HOH HOH . 
H 6 HOH A 115 515 183 HOH HOH . 
H 6 HOH A 116 516 137 HOH HOH . 
H 6 HOH A 117 517 119 HOH HOH . 
H 6 HOH A 118 518 163 HOH HOH . 
H 6 HOH A 119 519 201 HOH HOH . 
H 6 HOH A 120 520 205 HOH HOH . 
H 6 HOH A 121 521 136 HOH HOH . 
H 6 HOH A 122 522 121 HOH HOH . 
H 6 HOH A 123 523 172 HOH HOH . 
H 6 HOH A 124 524 207 HOH HOH . 
H 6 HOH A 125 525 127 HOH HOH . 
H 6 HOH A 126 526 166 HOH HOH . 
H 6 HOH A 127 527 198 HOH HOH . 
H 6 HOH A 128 528 178 HOH HOH . 
H 6 HOH A 129 529 151 HOH HOH . 
H 6 HOH A 130 530 114 HOH HOH . 
H 6 HOH A 131 531 179 HOH HOH . 
H 6 HOH A 132 532 215 HOH HOH . 
I 6 HOH B 1 401 143 HOH HOH . 
I 6 HOH B 2 402 197 HOH HOH . 
I 6 HOH B 3 403 148 HOH HOH . 
I 6 HOH B 4 404 146 HOH HOH . 
I 6 HOH B 5 405 19 HOH HOH . 
I 6 HOH B 6 406 68 HOH HOH . 
I 6 HOH B 7 407 41 HOH HOH . 
I 6 HOH B 8 408 97 HOH HOH . 
I 6 HOH B 9 409 15 HOH HOH . 
I 6 HOH B 10 410 1 HOH HOH . 
I 6 HOH B 11 411 204 HOH HOH . 
I 6 HOH B 12 412 109 HOH HOH . 
I 6 HOH B 13 413 57 HOH HOH . 
I 6 HOH B 14 414 25 HOH HOH . 
I 6 HOH B 15 415 56 HOH HOH . 
I 6 HOH B 16 416 6 HOH HOH . 
I 6 HOH B 17 417 13 HOH HOH . 
I 6 HOH B 18 418 22 HOH HOH . 
I 6 HOH B 19 419 7 HOH HOH . 
I 6 HOH B 20 420 77 HOH HOH . 
I 6 HOH B 21 421 14 HOH HOH . 
I 6 HOH B 22 422 167 HOH HOH . 
I 6 HOH B 23 423 217 HOH HOH . 
I 6 HOH B 24 424 51 HOH HOH . 
I 6 HOH B 25 425 42 HOH HOH . 
I 6 HOH B 26 426 113 HOH HOH . 
I 6 HOH B 27 427 65 HOH HOH . 
I 6 HOH B 28 428 16 HOH HOH . 
I 6 HOH B 29 429 138 HOH HOH . 
I 6 HOH B 30 430 18 HOH HOH . 
I 6 HOH B 31 431 30 HOH HOH . 
I 6 HOH B 32 432 96 HOH HOH . 
I 6 HOH B 33 433 133 HOH HOH . 
I 6 HOH B 34 434 31 HOH HOH . 
I 6 HOH B 35 435 218 HOH HOH . 
I 6 HOH B 36 436 12 HOH HOH . 
I 6 HOH B 37 437 23 HOH HOH . 
I 6 HOH B 38 438 152 HOH HOH . 
I 6 HOH B 39 439 141 HOH HOH . 
I 6 HOH B 40 440 102 HOH HOH . 
I 6 HOH B 41 441 52 HOH HOH . 
I 6 HOH B 42 442 159 HOH HOH . 
I 6 HOH B 43 443 2 HOH HOH . 
I 6 HOH B 44 444 140 HOH HOH . 
I 6 HOH B 45 445 171 HOH HOH . 
I 6 HOH B 46 446 54 HOH HOH . 
I 6 HOH B 47 447 43 HOH HOH . 
I 6 HOH B 48 448 135 HOH HOH . 
I 6 HOH B 49 449 200 HOH HOH . 
I 6 HOH B 50 450 53 HOH HOH . 
I 6 HOH B 51 451 103 HOH HOH . 
I 6 HOH B 52 452 44 HOH HOH . 
I 6 HOH B 53 453 58 HOH HOH . 
I 6 HOH B 54 454 161 HOH HOH . 
I 6 HOH B 55 455 99 HOH HOH . 
I 6 HOH B 56 456 110 HOH HOH . 
I 6 HOH B 57 457 75 HOH HOH . 
I 6 HOH B 58 458 170 HOH HOH . 
I 6 HOH B 59 459 46 HOH HOH . 
I 6 HOH B 60 460 94 HOH HOH . 
I 6 HOH B 61 461 47 HOH HOH . 
I 6 HOH B 62 462 70 HOH HOH . 
I 6 HOH B 63 463 9 HOH HOH . 
I 6 HOH B 64 464 32 HOH HOH . 
I 6 HOH B 65 465 155 HOH HOH . 
I 6 HOH B 66 466 154 HOH HOH . 
I 6 HOH B 67 467 67 HOH HOH . 
I 6 HOH B 68 468 78 HOH HOH . 
I 6 HOH B 69 469 85 HOH HOH . 
I 6 HOH B 70 470 92 HOH HOH . 
I 6 HOH B 71 471 112 HOH HOH . 
I 6 HOH B 72 472 118 HOH HOH . 
I 6 HOH B 73 473 76 HOH HOH . 
I 6 HOH B 74 474 214 HOH HOH . 
I 6 HOH B 75 475 157 HOH HOH . 
I 6 HOH B 76 476 202 HOH HOH . 
I 6 HOH B 77 477 210 HOH HOH . 
I 6 HOH B 78 478 63 HOH HOH . 
I 6 HOH B 79 479 105 HOH HOH . 
I 6 HOH B 80 480 208 HOH HOH . 
I 6 HOH B 81 481 150 HOH HOH . 
I 6 HOH B 82 482 220 HOH HOH . 
I 6 HOH B 83 483 213 HOH HOH . 
I 6 HOH B 84 484 69 HOH HOH . 
I 6 HOH B 85 485 211 HOH HOH . 
I 6 HOH B 86 486 188 HOH HOH . 
I 6 HOH B 87 487 181 HOH HOH . 
J 6 HOH C 1 501 164 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -13.057 
_atom_site.Cartn_y               15.466 
_atom_site.Cartn_z               -4.82 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        12.55 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           47 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           1487 
_model_server_stats.encode_time_ms          27 
_model_server_stats.element_count           1 
#