data_5XW9 # _model_server_result.job_id OfRl7lguyqCji3doTfvEXA _model_server_result.datetime_utc '2025-03-04 04:03:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 5XW9 # _exptl.entry_id 5XW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XW9 _cell.length_a 82.665 _cell.length_b 82.665 _cell.length_c 134.674 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 15 1_555 B SG CYS 12 B CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 33 A CYS 33 1_555 A SG CYS 49 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 117 A CYS 117 1_555 B SG CYS 85 B CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 B SG CYS 58 B CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 23 B CYS 156 1_555 B SG CYS 37 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 B SG CYS 48 B CYS 181 1_555 B SG CYS 72 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 C C ACE 1 C ACE 401 1_555 C N PRO 2 C PRO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A OE2 GLU 60 A GLU 60 1_555 D CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A O ASN 62 A ASN 62 1_555 D CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc3 A O VAL 65 A VAL 65 1_555 D CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc4 A OE1 GLU 67 A GLU 67 1_555 D CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc5 A OE2 GLU 70 A GLU 70 1_555 D CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc6 D CA CA . A CA 300 1_555 E O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XW9 _atom_sites.fract_transf_matrix[1][1] 0.012097 _atom_sites.fract_transf_matrix[1][2] 0.006984 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 300 300 CA CA . E 5 HOH A 1 401 144 HOH HOH . E 5 HOH A 2 402 74 HOH HOH . E 5 HOH A 3 403 6 HOH HOH . E 5 HOH A 4 404 15 HOH HOH . E 5 HOH A 5 405 120 HOH HOH . E 5 HOH A 6 406 14 HOH HOH . E 5 HOH A 7 407 71 HOH HOH . E 5 HOH A 8 408 46 HOH HOH . E 5 HOH A 9 409 62 HOH HOH . E 5 HOH A 10 410 2 HOH HOH . E 5 HOH A 11 411 69 HOH HOH . E 5 HOH A 12 412 83 HOH HOH . E 5 HOH A 13 413 42 HOH HOH . E 5 HOH A 14 414 9 HOH HOH . E 5 HOH A 15 415 23 HOH HOH . E 5 HOH A 16 416 30 HOH HOH . E 5 HOH A 17 417 68 HOH HOH . E 5 HOH A 18 418 39 HOH HOH . E 5 HOH A 19 419 78 HOH HOH . E 5 HOH A 20 420 61 HOH HOH . E 5 HOH A 21 421 128 HOH HOH . E 5 HOH A 22 422 37 HOH HOH . E 5 HOH A 23 423 8 HOH HOH . E 5 HOH A 24 424 130 HOH HOH . E 5 HOH A 25 425 105 HOH HOH . E 5 HOH A 26 426 24 HOH HOH . E 5 HOH A 27 427 18 HOH HOH . E 5 HOH A 28 428 155 HOH HOH . E 5 HOH A 29 429 10 HOH HOH . E 5 HOH A 30 430 22 HOH HOH . E 5 HOH A 31 431 31 HOH HOH . E 5 HOH A 32 432 13 HOH HOH . E 5 HOH A 33 433 65 HOH HOH . E 5 HOH A 34 434 59 HOH HOH . E 5 HOH A 35 435 164 HOH HOH . E 5 HOH A 36 436 112 HOH HOH . E 5 HOH A 37 437 52 HOH HOH . E 5 HOH A 38 438 5 HOH HOH . E 5 HOH A 39 439 90 HOH HOH . E 5 HOH A 40 440 63 HOH HOH . E 5 HOH A 41 441 7 HOH HOH . E 5 HOH A 42 442 89 HOH HOH . E 5 HOH A 43 443 166 HOH HOH . E 5 HOH A 44 444 77 HOH HOH . E 5 HOH A 45 445 119 HOH HOH . E 5 HOH A 46 446 53 HOH HOH . E 5 HOH A 47 447 100 HOH HOH . E 5 HOH A 48 448 96 HOH HOH . E 5 HOH A 49 449 48 HOH HOH . E 5 HOH A 50 450 104 HOH HOH . E 5 HOH A 51 451 76 HOH HOH . E 5 HOH A 52 452 49 HOH HOH . E 5 HOH A 53 453 28 HOH HOH . E 5 HOH A 54 454 29 HOH HOH . E 5 HOH A 55 455 67 HOH HOH . E 5 HOH A 56 456 87 HOH HOH . E 5 HOH A 57 457 103 HOH HOH . E 5 HOH A 58 458 116 HOH HOH . E 5 HOH A 59 459 138 HOH HOH . E 5 HOH A 60 460 35 HOH HOH . E 5 HOH A 61 461 168 HOH HOH . E 5 HOH A 62 462 56 HOH HOH . E 5 HOH A 63 463 50 HOH HOH . E 5 HOH A 64 464 57 HOH HOH . E 5 HOH A 65 465 75 HOH HOH . E 5 HOH A 66 466 94 HOH HOH . E 5 HOH A 67 467 72 HOH HOH . E 5 HOH A 68 468 101 HOH HOH . E 5 HOH A 69 469 124 HOH HOH . E 5 HOH A 70 470 80 HOH HOH . E 5 HOH A 71 471 82 HOH HOH . E 5 HOH A 72 472 143 HOH HOH . E 5 HOH A 73 473 136 HOH HOH . E 5 HOH A 74 474 125 HOH HOH . E 5 HOH A 75 475 117 HOH HOH . E 5 HOH A 76 476 135 HOH HOH . E 5 HOH A 77 477 66 HOH HOH . E 5 HOH A 78 478 167 HOH HOH . E 5 HOH A 79 479 161 HOH HOH . E 5 HOH A 80 480 64 HOH HOH . E 5 HOH A 81 481 70 HOH HOH . E 5 HOH A 82 482 113 HOH HOH . E 5 HOH A 83 483 99 HOH HOH . E 5 HOH A 84 484 160 HOH HOH . E 5 HOH A 85 485 165 HOH HOH . E 5 HOH A 86 486 123 HOH HOH . E 5 HOH A 87 487 134 HOH HOH . E 5 HOH A 88 488 132 HOH HOH . E 5 HOH A 89 489 148 HOH HOH . E 5 HOH A 90 490 115 HOH HOH . E 5 HOH A 91 491 152 HOH HOH . E 5 HOH A 92 492 73 HOH HOH . E 5 HOH A 93 493 157 HOH HOH . E 5 HOH A 94 494 149 HOH HOH . E 5 HOH A 95 495 162 HOH HOH . E 5 HOH A 96 496 158 HOH HOH . E 5 HOH A 97 497 163 HOH HOH . F 5 HOH B 1 301 142 HOH HOH . F 5 HOH B 2 302 111 HOH HOH . F 5 HOH B 3 303 43 HOH HOH . F 5 HOH B 4 304 108 HOH HOH . F 5 HOH B 5 305 38 HOH HOH . F 5 HOH B 6 306 26 HOH HOH . F 5 HOH B 7 307 1 HOH HOH . F 5 HOH B 8 308 11 HOH HOH . F 5 HOH B 9 309 41 HOH HOH . F 5 HOH B 10 310 16 HOH HOH . F 5 HOH B 11 311 121 HOH HOH . F 5 HOH B 12 312 133 HOH HOH . F 5 HOH B 13 313 44 HOH HOH . F 5 HOH B 14 314 131 HOH HOH . F 5 HOH B 15 315 19 HOH HOH . F 5 HOH B 16 316 126 HOH HOH . F 5 HOH B 17 317 21 HOH HOH . F 5 HOH B 18 318 25 HOH HOH . F 5 HOH B 19 319 20 HOH HOH . F 5 HOH B 20 320 33 HOH HOH . F 5 HOH B 21 321 110 HOH HOH . F 5 HOH B 22 322 54 HOH HOH . F 5 HOH B 23 323 12 HOH HOH . F 5 HOH B 24 324 86 HOH HOH . F 5 HOH B 25 325 93 HOH HOH . F 5 HOH B 26 326 40 HOH HOH . F 5 HOH B 27 327 109 HOH HOH . F 5 HOH B 28 328 150 HOH HOH . F 5 HOH B 29 329 107 HOH HOH . F 5 HOH B 30 330 36 HOH HOH . F 5 HOH B 31 331 4 HOH HOH . F 5 HOH B 32 332 92 HOH HOH . F 5 HOH B 33 333 122 HOH HOH . F 5 HOH B 34 334 84 HOH HOH . F 5 HOH B 35 335 55 HOH HOH . F 5 HOH B 36 336 114 HOH HOH . F 5 HOH B 37 337 156 HOH HOH . F 5 HOH B 38 338 47 HOH HOH . F 5 HOH B 39 339 34 HOH HOH . F 5 HOH B 40 340 88 HOH HOH . F 5 HOH B 41 341 60 HOH HOH . F 5 HOH B 42 342 27 HOH HOH . F 5 HOH B 43 343 3 HOH HOH . F 5 HOH B 44 344 17 HOH HOH . F 5 HOH B 45 345 118 HOH HOH . F 5 HOH B 46 346 91 HOH HOH . F 5 HOH B 47 347 154 HOH HOH . F 5 HOH B 48 348 102 HOH HOH . F 5 HOH B 49 349 32 HOH HOH . F 5 HOH B 50 350 58 HOH HOH . F 5 HOH B 51 351 159 HOH HOH . F 5 HOH B 52 352 95 HOH HOH . F 5 HOH B 53 353 51 HOH HOH . F 5 HOH B 54 354 106 HOH HOH . F 5 HOH B 55 355 85 HOH HOH . F 5 HOH B 56 356 98 HOH HOH . F 5 HOH B 57 357 127 HOH HOH . F 5 HOH B 58 358 153 HOH HOH . F 5 HOH B 59 359 45 HOH HOH . F 5 HOH B 60 360 147 HOH HOH . F 5 HOH B 61 361 139 HOH HOH . F 5 HOH B 62 362 141 HOH HOH . F 5 HOH B 63 363 140 HOH HOH . F 5 HOH B 64 364 146 HOH HOH . F 5 HOH B 65 365 81 HOH HOH . F 5 HOH B 66 366 145 HOH HOH . F 5 HOH B 67 367 137 HOH HOH . F 5 HOH B 68 368 97 HOH HOH . F 5 HOH B 69 369 79 HOH HOH . F 5 HOH B 70 370 151 HOH HOH . G 5 HOH C 1 501 129 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -13.023 _atom_site.Cartn_y 15.318 _atom_site.Cartn_z -4.77 _atom_site.occupancy 0 _atom_site.B_iso_or_equiv 6.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #