data_5XWE # _model_server_result.job_id P-k-qKSD9LWq25T88UNAmQ _model_server_result.datetime_utc '2024-10-19 19:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 5XWE # _exptl.entry_id 5XWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.75 _cell.angle_gamma 90 _cell.entry_id 5XWE _cell.length_a 39.48 _cell.length_b 18.183 _cell.length_c 77.19 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 3 1_555 A SG CYS 45 A CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf2 A SG CYS 38 A CYS 17 1_555 A SG CYS 62 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 64 A CYS 43 1_555 A SG CYS 75 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf4 A SG CYS 76 A CYS 55 1_555 A SG CYS 81 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf5 B SG CYS 24 B CYS 3 1_555 B SG CYS 45 B CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf6 B SG CYS 38 B CYS 17 1_555 B SG CYS 62 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 B SG CYS 64 B CYS 43 1_555 B SG CYS 75 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf8 B SG CYS 76 B CYS 55 1_555 B SG CYS 81 B CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc1 A OD2 ASP 79 A ASP 58 1_555 J ZN ZN . B ZN 104 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 B OD2 ASP 79 B ASP 58 1_555 J ZN ZN . B ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc3 J ZN ZN . B ZN 104 1_555 L O HOH . B HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5XWE _atom_sites.fract_transf_matrix[1][1] 0.025329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006666 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.054996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 101 101 GOL GOL . D 3 CL A 1 102 3 CL CL . E 3 CL A 1 103 4 CL CL . F 3 CL A 1 104 5 CL CL . G 2 GOL B 1 101 101 GOL GOL . H 3 CL B 1 102 1 CL CL . I 3 CL B 1 103 2 CL CL . J 4 ZN B 1 104 3 ZN ZN . K 5 HOH A 1 201 68 HOH HOH . K 5 HOH A 2 202 51 HOH HOH . K 5 HOH A 3 203 59 HOH HOH . K 5 HOH A 4 204 3 HOH HOH . K 5 HOH A 5 205 22 HOH HOH . K 5 HOH A 6 206 10 HOH HOH . K 5 HOH A 7 207 37 HOH HOH . K 5 HOH A 8 208 42 HOH HOH . K 5 HOH A 9 209 15 HOH HOH . K 5 HOH A 10 210 63 HOH HOH . K 5 HOH A 11 211 16 HOH HOH . K 5 HOH A 12 212 31 HOH HOH . K 5 HOH A 13 213 27 HOH HOH . K 5 HOH A 14 214 23 HOH HOH . K 5 HOH A 15 215 45 HOH HOH . K 5 HOH A 16 216 69 HOH HOH . K 5 HOH A 17 217 4 HOH HOH . K 5 HOH A 18 218 40 HOH HOH . K 5 HOH A 19 219 46 HOH HOH . K 5 HOH A 20 220 84 HOH HOH . K 5 HOH A 21 221 52 HOH HOH . K 5 HOH A 22 222 38 HOH HOH . K 5 HOH A 23 223 53 HOH HOH . K 5 HOH A 24 224 79 HOH HOH . K 5 HOH A 25 225 25 HOH HOH . K 5 HOH A 26 226 18 HOH HOH . K 5 HOH A 27 227 73 HOH HOH . K 5 HOH A 28 228 11 HOH HOH . K 5 HOH A 29 229 64 HOH HOH . K 5 HOH A 30 230 80 HOH HOH . K 5 HOH A 31 231 58 HOH HOH . L 5 HOH B 1 201 78 HOH HOH . L 5 HOH B 2 202 35 HOH HOH . L 5 HOH B 3 203 6 HOH HOH . L 5 HOH B 4 204 47 HOH HOH . L 5 HOH B 5 205 33 HOH HOH . L 5 HOH B 6 206 62 HOH HOH . L 5 HOH B 7 207 17 HOH HOH . L 5 HOH B 8 208 14 HOH HOH . L 5 HOH B 9 209 1 HOH HOH . L 5 HOH B 10 210 9 HOH HOH . L 5 HOH B 11 211 36 HOH HOH . L 5 HOH B 12 212 65 HOH HOH . L 5 HOH B 13 213 26 HOH HOH . L 5 HOH B 14 214 5 HOH HOH . L 5 HOH B 15 215 2 HOH HOH . L 5 HOH B 16 216 34 HOH HOH . L 5 HOH B 17 217 39 HOH HOH . L 5 HOH B 18 218 13 HOH HOH . L 5 HOH B 19 219 60 HOH HOH . L 5 HOH B 20 220 28 HOH HOH . L 5 HOH B 21 221 7 HOH HOH . L 5 HOH B 22 222 83 HOH HOH . L 5 HOH B 23 223 74 HOH HOH . L 5 HOH B 24 224 54 HOH HOH . L 5 HOH B 25 225 56 HOH HOH . L 5 HOH B 26 226 72 HOH HOH . L 5 HOH B 27 227 8 HOH HOH . L 5 HOH B 28 228 61 HOH HOH . L 5 HOH B 29 229 48 HOH HOH . L 5 HOH B 30 230 71 HOH HOH . L 5 HOH B 31 231 57 HOH HOH . L 5 HOH B 32 232 70 HOH HOH . L 5 HOH B 33 233 49 HOH HOH . L 5 HOH B 34 234 76 HOH HOH . L 5 HOH B 35 235 32 HOH HOH . L 5 HOH B 36 236 66 HOH HOH . L 5 HOH B 37 237 41 HOH HOH . L 5 HOH B 38 238 43 HOH HOH . L 5 HOH B 39 239 29 HOH HOH . L 5 HOH B 40 240 12 HOH HOH . L 5 HOH B 41 241 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 -13.042 0.091 -7.361 1 24.6 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . G 2 -12.466 -1.143 -7.222 1 26.75 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . G 2 -14.342 -0.017 -6.699 1 19.72 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . G 2 -14.637 1.146 -6.054 1 30.77 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . G 2 -15.287 -0.262 -7.842 1 24.8 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . G 2 -15.886 -1.497 -7.655 1 25.82 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #