data_5XWE
#
_model_server_result.job_id            an7Dn_djWvWaz8bkY692VA 
_model_server_result.datetime_utc      '2024-10-19 20:10:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xwe 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":104}' 
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_entry.id    5XWE 
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_exptl.entry_id    5XWE 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          104.75 
_cell.angle_gamma         90 
_cell.entry_id            5XWE 
_cell.length_a            39.48 
_cell.length_b            18.183 
_cell.length_c            77.19 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5XWE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 3 1_555 A SG CYS 45 A CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf2 A SG CYS 38 A CYS 17 1_555 A SG CYS 62 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 64 A CYS 43 1_555 A SG CYS 75 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf4 A SG CYS 76 A CYS 55 1_555 A SG CYS 81 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
disulf ? disulf5 B SG CYS 24 B CYS 3 1_555 B SG CYS 45 B CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf6 B SG CYS 38 B CYS 17 1_555 B SG CYS 62 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 B SG CYS 64 B CYS 43 1_555 B SG CYS 75 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf8 B SG CYS 76 B CYS 55 1_555 B SG CYS 81 B CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc1 A OD2 ASP 79 A ASP 58 1_555 J ZN ZN . B ZN 104 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc2 B OD2 ASP 79 B ASP 58 1_555 J ZN ZN . B ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc3 J ZN ZN . B ZN 104 1_555 L O HOH . B HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     5XWE 
_atom_sites.fract_transf_matrix[1][1]    0.025329 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006666 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.054996 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013396 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 101 101 GOL GOL . 
D 3 CL A 1 102 3 CL CL . 
E 3 CL A 1 103 4 CL CL . 
F 3 CL A 1 104 5 CL CL . 
G 2 GOL B 1 101 101 GOL GOL . 
H 3 CL B 1 102 1 CL CL . 
I 3 CL B 1 103 2 CL CL . 
J 4 ZN B 1 104 3 ZN ZN . 
K 5 HOH A 1 201 68 HOH HOH . 
K 5 HOH A 2 202 51 HOH HOH . 
K 5 HOH A 3 203 59 HOH HOH . 
K 5 HOH A 4 204 3 HOH HOH . 
K 5 HOH A 5 205 22 HOH HOH . 
K 5 HOH A 6 206 10 HOH HOH . 
K 5 HOH A 7 207 37 HOH HOH . 
K 5 HOH A 8 208 42 HOH HOH . 
K 5 HOH A 9 209 15 HOH HOH . 
K 5 HOH A 10 210 63 HOH HOH . 
K 5 HOH A 11 211 16 HOH HOH . 
K 5 HOH A 12 212 31 HOH HOH . 
K 5 HOH A 13 213 27 HOH HOH . 
K 5 HOH A 14 214 23 HOH HOH . 
K 5 HOH A 15 215 45 HOH HOH . 
K 5 HOH A 16 216 69 HOH HOH . 
K 5 HOH A 17 217 4 HOH HOH . 
K 5 HOH A 18 218 40 HOH HOH . 
K 5 HOH A 19 219 46 HOH HOH . 
K 5 HOH A 20 220 84 HOH HOH . 
K 5 HOH A 21 221 52 HOH HOH . 
K 5 HOH A 22 222 38 HOH HOH . 
K 5 HOH A 23 223 53 HOH HOH . 
K 5 HOH A 24 224 79 HOH HOH . 
K 5 HOH A 25 225 25 HOH HOH . 
K 5 HOH A 26 226 18 HOH HOH . 
K 5 HOH A 27 227 73 HOH HOH . 
K 5 HOH A 28 228 11 HOH HOH . 
K 5 HOH A 29 229 64 HOH HOH . 
K 5 HOH A 30 230 80 HOH HOH . 
K 5 HOH A 31 231 58 HOH HOH . 
L 5 HOH B 1 201 78 HOH HOH . 
L 5 HOH B 2 202 35 HOH HOH . 
L 5 HOH B 3 203 6 HOH HOH . 
L 5 HOH B 4 204 47 HOH HOH . 
L 5 HOH B 5 205 33 HOH HOH . 
L 5 HOH B 6 206 62 HOH HOH . 
L 5 HOH B 7 207 17 HOH HOH . 
L 5 HOH B 8 208 14 HOH HOH . 
L 5 HOH B 9 209 1 HOH HOH . 
L 5 HOH B 10 210 9 HOH HOH . 
L 5 HOH B 11 211 36 HOH HOH . 
L 5 HOH B 12 212 65 HOH HOH . 
L 5 HOH B 13 213 26 HOH HOH . 
L 5 HOH B 14 214 5 HOH HOH . 
L 5 HOH B 15 215 2 HOH HOH . 
L 5 HOH B 16 216 34 HOH HOH . 
L 5 HOH B 17 217 39 HOH HOH . 
L 5 HOH B 18 218 13 HOH HOH . 
L 5 HOH B 19 219 60 HOH HOH . 
L 5 HOH B 20 220 28 HOH HOH . 
L 5 HOH B 21 221 7 HOH HOH . 
L 5 HOH B 22 222 83 HOH HOH . 
L 5 HOH B 23 223 74 HOH HOH . 
L 5 HOH B 24 224 54 HOH HOH . 
L 5 HOH B 25 225 56 HOH HOH . 
L 5 HOH B 26 226 72 HOH HOH . 
L 5 HOH B 27 227 8 HOH HOH . 
L 5 HOH B 28 228 61 HOH HOH . 
L 5 HOH B 29 229 48 HOH HOH . 
L 5 HOH B 30 230 71 HOH HOH . 
L 5 HOH B 31 231 57 HOH HOH . 
L 5 HOH B 32 232 70 HOH HOH . 
L 5 HOH B 33 233 49 HOH HOH . 
L 5 HOH B 34 234 76 HOH HOH . 
L 5 HOH B 35 235 32 HOH HOH . 
L 5 HOH B 36 236 66 HOH HOH . 
L 5 HOH B 37 237 41 HOH HOH . 
L 5 HOH B 38 238 43 HOH HOH . 
L 5 HOH B 39 239 29 HOH HOH . 
L 5 HOH B 40 240 12 HOH HOH . 
L 5 HOH B 41 241 50 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -24.762 
_atom_site.Cartn_y               -6.555 
_atom_site.Cartn_z               -18.532 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        14.38 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           104 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
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_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#