data_5XWW # _model_server_result.job_id a_Zk3rtPKhULzQnR-Csr4w _model_server_result.datetime_utc '2024-10-13 09:16:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5XWW # _exptl.entry_id 5XWW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 72.67 _cell.angle_beta 67.21 _cell.angle_gamma 89.88 _cell.entry_id 5XWW _cell.length_a 61.066 _cell.length_b 63.627 _cell.length_c 71.586 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 152 A ARG 131 1_555 B NH2 ARG 152 B ARG 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? covale ? covale2 B CZ ARG 192 B ARG 171 1_555 B OE2 GLU 316 B GLU 295 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.537 ? covale ? covale3 B NH2 ARG 192 B ARG 171 1_555 B OE2 GLU 316 B GLU 295 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 292 n n PA O2A NAP sing 293 n n PA O5B NAP sing 294 n n PA O3 NAP sing 295 n n O2A HOA2 NAP sing 296 n n O5B C5B NAP sing 297 n n C5B C4B NAP sing 298 n n C5B H51A NAP sing 299 n n C5B H52A NAP sing 300 n n C4B O4B NAP sing 301 n n C4B C3B NAP sing 302 n n C4B H4B NAP sing 303 n n O4B C1B NAP sing 304 n n C3B O3B NAP sing 305 n n C3B C2B NAP sing 306 n n C3B H3B NAP sing 307 n n O3B HO3A NAP sing 308 n n C2B O2B NAP sing 309 n n C2B C1B NAP sing 310 n n C2B H2B NAP sing 311 n n O2B P2B NAP sing 312 n n C1B N9A NAP sing 313 n n C1B H1B NAP sing 314 n n N9A C8A NAP sing 315 n y N9A C4A NAP sing 316 n y C8A N7A NAP doub 317 n y C8A H8A NAP sing 318 n n N7A C5A NAP sing 319 n y C5A C6A NAP sing 320 n y C5A C4A NAP doub 321 n y C6A N6A NAP sing 322 n n C6A N1A NAP doub 323 n y N6A H61A NAP sing 324 n n N6A H62A NAP sing 325 n n N1A C2A NAP sing 326 n y C2A N3A NAP doub 327 n y C2A H2A NAP sing 328 n n N3A C4A NAP sing 329 n y O3 PN NAP sing 330 n n PN O1N NAP doub 331 n n PN O2N NAP sing 332 n n PN O5D NAP sing 333 n n O5D C5D NAP sing 334 n n C5D C4D NAP sing 335 n n C5D H51N NAP sing 336 n n C5D H52N NAP sing 337 n n C4D O4D NAP sing 338 n n C4D C3D NAP sing 339 n n C4D H4D NAP sing 340 n n O4D C1D NAP sing 341 n n C3D O3D NAP sing 342 n n C3D C2D NAP sing 343 n n C3D H3D NAP sing 344 n n O3D HO3N NAP sing 345 n n C2D O2D NAP sing 346 n n C2D C1D NAP sing 347 n n C2D H2D NAP sing 348 n n O2D HO2N NAP sing 349 n n C1D N1N NAP sing 350 n n C1D H1D NAP sing 351 n n N1N C2N NAP sing 352 n y N1N C6N NAP doub 353 n y C2N C3N NAP doub 354 n y C2N H2N NAP sing 355 n n C3N C7N NAP sing 356 n n C3N C4N NAP sing 357 n y C7N O7N NAP doub 358 n n C7N N7N NAP sing 359 n n N7N H71N NAP sing 360 n n N7N H72N NAP sing 361 n n C4N C5N NAP doub 362 n y C4N H4N NAP sing 363 n n C5N C6N NAP sing 364 n y C5N H5N NAP sing 365 n n C6N H6N NAP sing 366 n n P2B O1X NAP doub 367 n n P2B O2X NAP sing 368 n n P2B O3X NAP sing 369 n n O2X HOP2 NAP sing 370 n n O3X HOP3 NAP sing 371 n n # _atom_sites.entry_id 5XWW _atom_sites.fract_transf_matrix[1][1] 0.016376 _atom_sites.fract_transf_matrix[1][2] -0.000035 _atom_sites.fract_transf_matrix[1][3] -0.007256 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015717 _atom_sites.fract_transf_matrix[2][3] -0.005349 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 501 476 NAP NAP . D 3 8H6 A 1 502 479 8H6 PPA . E 2 NAP B 1 501 476 NAP NAP . F 3 8H6 B 1 502 479 8H6 PPA . G 4 HOH A 1 601 25 HOH HOH . G 4 HOH A 2 602 50 HOH HOH . G 4 HOH A 3 603 52 HOH HOH . G 4 HOH A 4 604 3 HOH HOH . G 4 HOH A 5 605 11 HOH HOH . G 4 HOH A 6 606 76 HOH HOH . G 4 HOH A 7 607 70 HOH HOH . G 4 HOH A 8 608 48 HOH HOH . G 4 HOH A 9 609 46 HOH HOH . G 4 HOH A 10 610 58 HOH HOH . G 4 HOH A 11 611 5 HOH HOH . G 4 HOH A 12 612 43 HOH HOH . G 4 HOH A 13 613 71 HOH HOH . G 4 HOH A 14 614 54 HOH HOH . G 4 HOH A 15 615 6 HOH HOH . G 4 HOH A 16 616 60 HOH HOH . G 4 HOH A 17 617 100 HOH HOH . G 4 HOH A 18 618 83 HOH HOH . G 4 HOH A 19 619 82 HOH HOH . G 4 HOH A 20 620 29 HOH HOH . G 4 HOH A 21 621 80 HOH HOH . G 4 HOH A 22 622 18 HOH HOH . G 4 HOH A 23 623 75 HOH HOH . G 4 HOH A 24 624 63 HOH HOH . G 4 HOH A 25 625 41 HOH HOH . G 4 HOH A 26 626 61 HOH HOH . G 4 HOH A 27 627 45 HOH HOH . G 4 HOH A 28 628 86 HOH HOH . G 4 HOH A 29 629 69 HOH HOH . G 4 HOH A 30 630 10 HOH HOH . G 4 HOH A 31 631 95 HOH HOH . G 4 HOH A 32 632 72 HOH HOH . G 4 HOH A 33 633 62 HOH HOH . G 4 HOH A 34 634 89 HOH HOH . G 4 HOH A 35 635 85 HOH HOH . G 4 HOH A 36 636 84 HOH HOH . G 4 HOH A 37 637 102 HOH HOH . G 4 HOH A 38 638 55 HOH HOH . G 4 HOH A 39 639 1 HOH HOH . G 4 HOH A 40 640 23 HOH HOH . G 4 HOH A 41 641 24 HOH HOH . G 4 HOH A 42 642 19 HOH HOH . G 4 HOH A 43 643 93 HOH HOH . G 4 HOH A 44 644 20 HOH HOH . G 4 HOH A 45 645 101 HOH HOH . G 4 HOH A 46 646 32 HOH HOH . G 4 HOH A 47 647 77 HOH HOH . G 4 HOH A 48 648 8 HOH HOH . H 4 HOH B 1 601 81 HOH HOH . H 4 HOH B 2 602 78 HOH HOH . H 4 HOH B 3 603 59 HOH HOH . H 4 HOH B 4 604 2 HOH HOH . H 4 HOH B 5 605 73 HOH HOH . H 4 HOH B 6 606 38 HOH HOH . H 4 HOH B 7 607 31 HOH HOH . H 4 HOH B 8 608 47 HOH HOH . H 4 HOH B 9 609 74 HOH HOH . H 4 HOH B 10 610 13 HOH HOH . H 4 HOH B 11 611 99 HOH HOH . H 4 HOH B 12 612 79 HOH HOH . H 4 HOH B 13 613 15 HOH HOH . H 4 HOH B 14 614 64 HOH HOH . H 4 HOH B 15 615 65 HOH HOH . H 4 HOH B 16 616 98 HOH HOH . H 4 HOH B 17 617 53 HOH HOH . H 4 HOH B 18 618 4 HOH HOH . H 4 HOH B 19 619 57 HOH HOH . H 4 HOH B 20 620 34 HOH HOH . H 4 HOH B 21 621 66 HOH HOH . H 4 HOH B 22 622 21 HOH HOH . H 4 HOH B 23 623 17 HOH HOH . H 4 HOH B 24 624 88 HOH HOH . H 4 HOH B 25 625 40 HOH HOH . H 4 HOH B 26 626 16 HOH HOH . H 4 HOH B 27 627 42 HOH HOH . H 4 HOH B 28 628 33 HOH HOH . H 4 HOH B 29 629 56 HOH HOH . H 4 HOH B 30 630 35 HOH HOH . H 4 HOH B 31 631 90 HOH HOH . H 4 HOH B 32 632 14 HOH HOH . H 4 HOH B 33 633 7 HOH HOH . H 4 HOH B 34 634 26 HOH HOH . H 4 HOH B 35 635 30 HOH HOH . H 4 HOH B 36 636 97 HOH HOH . H 4 HOH B 37 637 49 HOH HOH . H 4 HOH B 38 638 28 HOH HOH . H 4 HOH B 39 639 87 HOH HOH . H 4 HOH B 40 640 12 HOH HOH . H 4 HOH B 41 641 51 HOH HOH . H 4 HOH B 42 642 9 HOH HOH . H 4 HOH B 43 643 22 HOH HOH . H 4 HOH B 44 644 67 HOH HOH . H 4 HOH B 45 645 27 HOH HOH . H 4 HOH B 46 646 36 HOH HOH . H 4 HOH B 47 647 37 HOH HOH . H 4 HOH B 48 648 68 HOH HOH . H 4 HOH B 49 649 39 HOH HOH . H 4 HOH B 50 650 96 HOH HOH . H 4 HOH B 51 651 92 HOH HOH . H 4 HOH B 52 652 44 HOH HOH . H 4 HOH B 53 653 94 HOH HOH . H 4 HOH B 54 654 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 -22.158 -31.905 24.483 1 23.65 ? PA NAP 501 B 1 HETATM 2 O O1A NAP . . . E 2 -23.019 -32.823 23.639 1 22.17 -1 O1A NAP 501 B 1 HETATM 3 O O2A NAP . . . E 2 -22.467 -31.618 25.903 1 22.98 ? O2A NAP 501 B 1 HETATM 4 O O5B NAP . . . E 2 -20.657 -32.407 24.408 1 23.31 ? O5B NAP 501 B 1 HETATM 5 C C5B NAP . . . E 2 -19.721 -31.858 25.324 1 23.62 ? C5B NAP 501 B 1 HETATM 6 C C4B NAP . . . E 2 -18.691 -32.945 25.557 1 19.78 ? C4B NAP 501 B 1 HETATM 7 O O4B NAP . . . E 2 -17.629 -32.469 26.386 1 21.21 ? O4B NAP 501 B 1 HETATM 8 C C3B NAP . . . E 2 -19.351 -34.117 26.26 1 22.45 ? C3B NAP 501 B 1 HETATM 9 O O3B NAP . . . E 2 -19.009 -35.317 25.53 1 22.96 ? O3B NAP 501 B 1 HETATM 10 C C2B NAP . . . E 2 -18.784 -34.093 27.674 1 21.38 ? C2B NAP 501 B 1 HETATM 11 O O2B NAP . . . E 2 -18.749 -35.405 28.225 1 21.07 ? O2B NAP 501 B 1 HETATM 12 C C1B NAP . . . E 2 -17.414 -33.475 27.379 1 21.26 ? C1B NAP 501 B 1 HETATM 13 N N9A NAP . . . E 2 -16.756 -32.852 28.513 1 21.1 ? N9A NAP 501 B 1 HETATM 14 C C8A NAP . . . E 2 -17.269 -31.929 29.342 1 22.18 ? C8A NAP 501 B 1 HETATM 15 N N7A NAP . . . E 2 -16.313 -31.502 30.182 1 22.04 ? N7A NAP 501 B 1 HETATM 16 C C5A NAP . . . E 2 -15.214 -32.261 29.972 1 21.65 ? C5A NAP 501 B 1 HETATM 17 C C6A NAP . . . E 2 -13.885 -32.412 30.588 1 22.61 ? C6A NAP 501 B 1 HETATM 18 N N6A NAP . . . E 2 -13.489 -31.617 31.609 1 24.78 ? N6A NAP 501 B 1 HETATM 19 N N1A NAP . . . E 2 -13.042 -33.289 30.027 1 26.36 ? N1A NAP 501 B 1 HETATM 20 C C2A NAP . . . E 2 -13.364 -34.05 28.96 1 23.24 ? C2A NAP 501 B 1 HETATM 21 N N3A NAP . . . E 2 -14.588 -34.012 28.408 1 22.05 ? N3A NAP 501 B 1 HETATM 22 C C4A NAP . . . E 2 -15.508 -33.125 28.845 1 21.67 ? C4A NAP 501 B 1 HETATM 23 O O3 NAP . . . E 2 -22.059 -30.442 23.784 1 20.72 ? O3 NAP 501 B 1 HETATM 24 P PN NAP . . . E 2 -21.895 -30.123 22.218 1 21.64 ? PN NAP 501 B 1 HETATM 25 O O1N NAP . . . E 2 -23.096 -29.333 21.779 1 22.72 -1 O1N NAP 501 B 1 HETATM 26 O O2N NAP . . . E 2 -21.448 -31.36 21.461 1 21.31 ? O2N NAP 501 B 1 HETATM 27 O O5D NAP . . . E 2 -20.688 -29.077 22.323 1 23.27 ? O5D NAP 501 B 1 HETATM 28 C C5D NAP . . . E 2 -19.404 -29.39 21.786 1 26.16 ? C5D NAP 501 B 1 HETATM 29 C C4D NAP . . . E 2 -18.539 -28.147 21.843 1 22.27 ? C4D NAP 501 B 1 HETATM 30 O O4D NAP . . . E 2 -19.085 -27.16 20.994 1 24.25 ? O4D NAP 501 B 1 HETATM 31 C C3D NAP . . . E 2 -18.514 -27.56 23.25 1 23.46 ? C3D NAP 501 B 1 HETATM 32 O O3D NAP . . . E 2 -17.173 -27.208 23.599 1 23.54 ? O3D NAP 501 B 1 HETATM 33 C C2D NAP . . . E 2 -19.349 -26.305 23.162 1 23.59 ? C2D NAP 501 B 1 HETATM 34 O O2D NAP . . . E 2 -18.836 -25.31 24.039 1 28.79 ? O2D NAP 501 B 1 HETATM 35 C C1D NAP . . . E 2 -19.224 -25.913 21.696 1 21.83 ? C1D NAP 501 B 1 HETATM 36 N N1N NAP . . . E 2 -20.423 -25.19 21.243 1 23.23 ? N1N NAP 501 B 1 HETATM 37 C C2N NAP . . . E 2 -21.574 -25.863 21.006 1 22.88 ? C2N NAP 501 B 1 HETATM 38 C C3N NAP . . . E 2 -22.687 -25.218 20.474 1 22.85 ? C3N NAP 501 B 1 HETATM 39 C C7N NAP . . . E 2 -23.997 -25.917 20.21 1 27.03 ? C7N NAP 501 B 1 HETATM 40 O O7N NAP . . . E 2 -24.889 -25.263 19.68 1 24.91 ? O7N NAP 501 B 1 HETATM 41 N N7N NAP . . . E 2 -24.174 -27.214 20.52 1 23.6 ? N7N NAP 501 B 1 HETATM 42 C C4N NAP . . . E 2 -22.665 -23.732 20.265 1 26.26 ? C4N NAP 501 B 1 HETATM 43 C C5N NAP . . . E 2 -21.393 -23.124 20.616 1 25.3 ? C5N NAP 501 B 1 HETATM 44 C C6N NAP . . . E 2 -20.317 -23.882 21.033 1 21.7 ? C6N NAP 501 B 1 HETATM 45 P P2B NAP . . . E 2 -18.586 -35.692 29.821 1 24.2 ? P2B NAP 501 B 1 HETATM 46 O O1X NAP . . . E 2 -18.786 -37.196 29.885 1 23.31 ? O1X NAP 501 B 1 HETATM 47 O O2X NAP . . . E 2 -17.184 -35.23 30.13 1 18.73 -1 O2X NAP 501 B 1 HETATM 48 O O3X NAP . . . E 2 -19.656 -34.916 30.491 1 23.8 ? O3X NAP 501 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #