data_5XXD # _model_server_result.job_id 8MC3EN9SZ8Ryzg1Njx6TaA _model_server_result.datetime_utc '2024-11-04 22:32:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 5XXD # _exptl.entry_id 5XXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XXD _cell.length_a 61.458 _cell.length_b 66.472 _cell.length_c 107.062 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 184 A CYS 186 1_555 F CAJ 8NR . A 8NR 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc1 A SG CYS 47 A CYS 49 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A SG CYS 50 A CYS 52 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 A SG CYS 60 A CYS 62 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 A SG CYS 63 A CYS 65 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc5 A SG CYS 69 A CYS 71 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc6 A SG CYS 73 A CYS 75 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc7 A NE2 HIS 81 A HIS 83 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc8 A SG CYS 85 A CYS 87 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc9 A SG CYS 206 A CYS 208 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc10 A SG CYS 259 A CYS 261 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc11 A SG CYS 261 A CYS 263 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc12 A SG CYS 264 A CYS 266 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XXD _atom_sites.fract_transf_matrix[1][1] 0.016271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 501 510 SAM SAM . C 3 ZN A 1 502 1 ZN ZN . D 3 ZN A 1 503 2 ZN ZN . E 3 ZN A 1 504 3 ZN ZN . F 4 8NR A 1 505 1 8NR DRG . G 5 HOH A 1 601 13 HOH HOH . G 5 HOH A 2 602 64 HOH HOH . G 5 HOH A 3 603 77 HOH HOH . G 5 HOH A 4 604 22 HOH HOH . G 5 HOH A 5 605 80 HOH HOH . G 5 HOH A 6 606 142 HOH HOH . G 5 HOH A 7 607 19 HOH HOH . G 5 HOH A 8 608 26 HOH HOH . G 5 HOH A 9 609 73 HOH HOH . G 5 HOH A 10 610 57 HOH HOH . G 5 HOH A 11 611 51 HOH HOH . G 5 HOH A 12 612 49 HOH HOH . G 5 HOH A 13 613 69 HOH HOH . G 5 HOH A 14 614 6 HOH HOH . G 5 HOH A 15 615 72 HOH HOH . G 5 HOH A 16 616 90 HOH HOH . G 5 HOH A 17 617 75 HOH HOH . G 5 HOH A 18 618 23 HOH HOH . G 5 HOH A 19 619 32 HOH HOH . G 5 HOH A 20 620 52 HOH HOH . G 5 HOH A 21 621 59 HOH HOH . G 5 HOH A 22 622 60 HOH HOH . G 5 HOH A 23 623 97 HOH HOH . G 5 HOH A 24 624 46 HOH HOH . G 5 HOH A 25 625 34 HOH HOH . G 5 HOH A 26 626 4 HOH HOH . G 5 HOH A 27 627 45 HOH HOH . G 5 HOH A 28 628 5 HOH HOH . G 5 HOH A 29 629 40 HOH HOH . G 5 HOH A 30 630 94 HOH HOH . G 5 HOH A 31 631 42 HOH HOH . G 5 HOH A 32 632 136 HOH HOH . G 5 HOH A 33 633 27 HOH HOH . G 5 HOH A 34 634 61 HOH HOH . G 5 HOH A 35 635 66 HOH HOH . G 5 HOH A 36 636 43 HOH HOH . G 5 HOH A 37 637 132 HOH HOH . G 5 HOH A 38 638 8 HOH HOH . G 5 HOH A 39 639 104 HOH HOH . G 5 HOH A 40 640 38 HOH HOH . G 5 HOH A 41 641 128 HOH HOH . G 5 HOH A 42 642 31 HOH HOH . G 5 HOH A 43 643 30 HOH HOH . G 5 HOH A 44 644 28 HOH HOH . G 5 HOH A 45 645 33 HOH HOH . G 5 HOH A 46 646 68 HOH HOH . G 5 HOH A 47 647 36 HOH HOH . G 5 HOH A 48 648 53 HOH HOH . G 5 HOH A 49 649 117 HOH HOH . G 5 HOH A 50 650 116 HOH HOH . G 5 HOH A 51 651 2 HOH HOH . G 5 HOH A 52 652 79 HOH HOH . G 5 HOH A 53 653 9 HOH HOH . G 5 HOH A 54 654 106 HOH HOH . G 5 HOH A 55 655 17 HOH HOH . G 5 HOH A 56 656 16 HOH HOH . G 5 HOH A 57 657 87 HOH HOH . G 5 HOH A 58 658 123 HOH HOH . G 5 HOH A 59 659 21 HOH HOH . G 5 HOH A 60 660 74 HOH HOH . G 5 HOH A 61 661 127 HOH HOH . G 5 HOH A 62 662 76 HOH HOH . G 5 HOH A 63 663 1 HOH HOH . G 5 HOH A 64 664 29 HOH HOH . G 5 HOH A 65 665 25 HOH HOH . G 5 HOH A 66 666 50 HOH HOH . G 5 HOH A 67 667 86 HOH HOH . G 5 HOH A 68 668 41 HOH HOH . G 5 HOH A 69 669 108 HOH HOH . G 5 HOH A 70 670 67 HOH HOH . G 5 HOH A 71 671 115 HOH HOH . G 5 HOH A 72 672 109 HOH HOH . G 5 HOH A 73 673 70 HOH HOH . G 5 HOH A 74 674 124 HOH HOH . G 5 HOH A 75 675 81 HOH HOH . G 5 HOH A 76 676 122 HOH HOH . G 5 HOH A 77 677 63 HOH HOH . G 5 HOH A 78 678 143 HOH HOH . G 5 HOH A 79 679 71 HOH HOH . G 5 HOH A 80 680 65 HOH HOH . G 5 HOH A 81 681 140 HOH HOH . G 5 HOH A 82 682 47 HOH HOH . G 5 HOH A 83 683 84 HOH HOH . G 5 HOH A 84 684 110 HOH HOH . G 5 HOH A 85 685 44 HOH HOH . G 5 HOH A 86 686 12 HOH HOH . G 5 HOH A 87 687 15 HOH HOH . G 5 HOH A 88 688 18 HOH HOH . G 5 HOH A 89 689 55 HOH HOH . G 5 HOH A 90 690 120 HOH HOH . G 5 HOH A 91 691 105 HOH HOH . G 5 HOH A 92 692 35 HOH HOH . G 5 HOH A 93 693 118 HOH HOH . G 5 HOH A 94 694 56 HOH HOH . G 5 HOH A 95 695 58 HOH HOH . G 5 HOH A 96 696 91 HOH HOH . G 5 HOH A 97 697 11 HOH HOH . G 5 HOH A 98 698 48 HOH HOH . G 5 HOH A 99 699 121 HOH HOH . G 5 HOH A 100 700 24 HOH HOH . G 5 HOH A 101 701 89 HOH HOH . G 5 HOH A 102 702 101 HOH HOH . G 5 HOH A 103 703 7 HOH HOH . G 5 HOH A 104 704 92 HOH HOH . G 5 HOH A 105 705 3 HOH HOH . G 5 HOH A 106 706 100 HOH HOH . G 5 HOH A 107 707 99 HOH HOH . G 5 HOH A 108 708 78 HOH HOH . G 5 HOH A 109 709 139 HOH HOH . G 5 HOH A 110 710 83 HOH HOH . G 5 HOH A 111 711 112 HOH HOH . G 5 HOH A 112 712 88 HOH HOH . G 5 HOH A 113 713 62 HOH HOH . G 5 HOH A 114 714 10 HOH HOH . G 5 HOH A 115 715 135 HOH HOH . G 5 HOH A 116 716 82 HOH HOH . G 5 HOH A 117 717 133 HOH HOH . G 5 HOH A 118 718 119 HOH HOH . G 5 HOH A 119 719 54 HOH HOH . G 5 HOH A 120 720 95 HOH HOH . G 5 HOH A 121 721 102 HOH HOH . G 5 HOH A 122 722 37 HOH HOH . G 5 HOH A 123 723 134 HOH HOH . G 5 HOH A 124 724 85 HOH HOH . G 5 HOH A 125 725 144 HOH HOH . G 5 HOH A 126 726 14 HOH HOH . G 5 HOH A 127 727 126 HOH HOH . G 5 HOH A 128 728 137 HOH HOH . G 5 HOH A 129 729 39 HOH HOH . G 5 HOH A 130 730 131 HOH HOH . G 5 HOH A 131 731 98 HOH HOH . G 5 HOH A 132 732 129 HOH HOH . G 5 HOH A 133 733 141 HOH HOH . G 5 HOH A 134 734 20 HOH HOH . G 5 HOH A 135 735 138 HOH HOH . G 5 HOH A 136 736 93 HOH HOH . G 5 HOH A 137 737 111 HOH HOH . G 5 HOH A 138 738 103 HOH HOH . G 5 HOH A 139 739 96 HOH HOH . G 5 HOH A 140 740 114 HOH HOH . G 5 HOH A 141 741 113 HOH HOH . G 5 HOH A 142 742 130 HOH HOH . G 5 HOH A 143 743 107 HOH HOH . G 5 HOH A 144 744 125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.993 _atom_site.Cartn_y -5.687 _atom_site.Cartn_z 103.395 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #