data_5XXH
#
_model_server_result.job_id            Xi5GEQ2g94A1_D_yaKMArA 
_model_server_result.datetime_utc      '2024-12-18 20:48:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xxh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1201}' 
#
_entry.id    5XXH 
#
_exptl.entry_id    5XXH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.362 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3S)-1-[2-(3-ethanoylindol-1-yl)ethanoyl]piperidine-3-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5XXH 
_cell.length_a            44.32 
_cell.length_b            44.32 
_cell.length_c            121.292 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XXH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D MG MG . A MG 1203 1_555 E O HOH . A HOH 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc2 D MG MG . A MG 1203 1_555 E O HOH . A HOH 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc3 D MG MG . A MG 1203 1_555 E O HOH . A HOH 1364 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc4 D MG MG . A MG 1203 1_555 E O HOH . A HOH 1380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc5 D MG MG . A MG 1203 1_555 E O HOH . A HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc6 D MG MG . A MG 1203 1_555 E O HOH . A HOH 1421 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
#
_chem_comp.formula           'C18 H20 N2 O4' 
_chem_comp.formula_weight    328.362 
_chem_comp.id                E0D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3S)-1-[2-(3-ethanoylindol-1-yl)ethanoyl]piperidine-3-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAU CAT E0D sing 83 n n 
CAU NAO E0D sing 84 n n 
CAA CAF E0D doub 85 n y 
CAA CAB E0D sing 86 n y 
CAF CAE E0D sing 87 n y 
CAT CAS E0D sing 88 n n 
NAO CAQ E0D sing 89 n n 
NAO C E0D sing 90 n n 
CAB CAC E0D doub 91 n y 
CA C E0D sing 92 n n 
CA N E0D sing 93 n n 
CAS CAR E0D sing 94 n n 
CAQ CAR E0D sing 95 n n 
CAE N E0D sing 96 n y 
CAE CAD E0D doub 97 n y 
C O E0D doub 98 n n 
N CAH E0D sing 99 n y 
OAX CAV E0D doub 100 n n 
CAR CAV E0D sing 101 n n 
CAC CAD E0D sing 102 n y 
CAD CAG E0D sing 103 n y 
CAV OAW E0D sing 104 n n 
CAH CAG E0D doub 105 n y 
CAG CAK E0D sing 106 n n 
CAK OAM E0D doub 107 n n 
CAK CAL E0D sing 108 n n 
OAW H1 E0D sing 109 n n 
CAR H2 E0D sing 110 n n 
CAQ H3 E0D sing 111 n n 
CAQ H4 E0D sing 112 n n 
CAS H5 E0D sing 113 n n 
CAS H6 E0D sing 114 n n 
CAT H7 E0D sing 115 n n 
CAT H8 E0D sing 116 n n 
CAU H9 E0D sing 117 n n 
CAU H10 E0D sing 118 n n 
CA H11 E0D sing 119 n n 
CA H12 E0D sing 120 n n 
CAH H13 E0D sing 121 n n 
CAF H14 E0D sing 122 n n 
CAA H15 E0D sing 123 n n 
CAB H16 E0D sing 124 n n 
CAC H17 E0D sing 125 n n 
CAL H18 E0D sing 126 n n 
CAL H19 E0D sing 127 n n 
CAL H20 E0D sing 128 n n 
#
_atom_sites.entry_id                     5XXH 
_atom_sites.fract_transf_matrix[1][1]    0.022563 
_atom_sites.fract_transf_matrix[1][2]    0.013027 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026054 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008245 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 E0D A 1 1201 1201 E0D E0D . 
C 3 EDO A 1 1202 1202 EDO EDO . 
D 4 MG A 1 1203 1203 MG MG . 
E 5 HOH A 1 1301 1301 HOH HOH . 
E 5 HOH A 2 1302 1302 HOH HOH . 
E 5 HOH A 3 1303 1303 HOH HOH . 
E 5 HOH A 4 1304 1304 HOH HOH . 
E 5 HOH A 5 1305 1305 HOH HOH . 
E 5 HOH A 6 1306 1306 HOH HOH . 
E 5 HOH A 7 1307 1307 HOH HOH . 
E 5 HOH A 8 1308 1308 HOH HOH . 
E 5 HOH A 9 1309 1309 HOH HOH . 
E 5 HOH A 10 1310 1310 HOH HOH . 
E 5 HOH A 11 1311 1311 HOH HOH . 
E 5 HOH A 12 1312 1312 HOH HOH . 
E 5 HOH A 13 1313 1313 HOH HOH . 
E 5 HOH A 14 1314 1314 HOH HOH . 
E 5 HOH A 15 1315 1315 HOH HOH . 
E 5 HOH A 16 1316 1316 HOH HOH . 
E 5 HOH A 17 1317 1317 HOH HOH . 
E 5 HOH A 18 1318 1318 HOH HOH . 
E 5 HOH A 19 1319 1319 HOH HOH . 
E 5 HOH A 20 1320 1320 HOH HOH . 
E 5 HOH A 21 1321 1321 HOH HOH . 
E 5 HOH A 22 1322 1334 HOH HOH . 
E 5 HOH A 23 1323 1322 HOH HOH . 
E 5 HOH A 24 1324 1323 HOH HOH . 
E 5 HOH A 25 1325 1324 HOH HOH . 
E 5 HOH A 26 1326 1325 HOH HOH . 
E 5 HOH A 27 1327 1326 HOH HOH . 
E 5 HOH A 28 1328 1327 HOH HOH . 
E 5 HOH A 29 1329 1328 HOH HOH . 
E 5 HOH A 30 1330 1329 HOH HOH . 
E 5 HOH A 31 1331 1330 HOH HOH . 
E 5 HOH A 32 1332 1331 HOH HOH . 
E 5 HOH A 33 1333 1332 HOH HOH . 
E 5 HOH A 34 1334 1333 HOH HOH . 
E 5 HOH A 35 1335 1335 HOH HOH . 
E 5 HOH A 36 1336 1336 HOH HOH . 
E 5 HOH A 37 1337 1337 HOH HOH . 
E 5 HOH A 38 1338 1338 HOH HOH . 
E 5 HOH A 39 1339 1339 HOH HOH . 
E 5 HOH A 40 1340 1340 HOH HOH . 
E 5 HOH A 41 1341 1341 HOH HOH . 
E 5 HOH A 42 1342 1342 HOH HOH . 
E 5 HOH A 43 1343 1343 HOH HOH . 
E 5 HOH A 44 1344 1344 HOH HOH . 
E 5 HOH A 45 1345 1345 HOH HOH . 
E 5 HOH A 46 1346 1346 HOH HOH . 
E 5 HOH A 47 1347 1347 HOH HOH . 
E 5 HOH A 48 1348 1348 HOH HOH . 
E 5 HOH A 49 1349 1349 HOH HOH . 
E 5 HOH A 50 1350 1350 HOH HOH . 
E 5 HOH A 51 1351 1351 HOH HOH . 
E 5 HOH A 52 1352 1352 HOH HOH . 
E 5 HOH A 53 1353 1353 HOH HOH . 
E 5 HOH A 54 1354 1354 HOH HOH . 
E 5 HOH A 55 1355 1355 HOH HOH . 
E 5 HOH A 56 1356 1356 HOH HOH . 
E 5 HOH A 57 1357 1357 HOH HOH . 
E 5 HOH A 58 1358 1358 HOH HOH . 
E 5 HOH A 59 1359 1359 HOH HOH . 
E 5 HOH A 60 1360 1360 HOH HOH . 
E 5 HOH A 61 1361 1361 HOH HOH . 
E 5 HOH A 62 1362 1362 HOH HOH . 
E 5 HOH A 63 1363 1363 HOH HOH . 
E 5 HOH A 64 1364 1364 HOH HOH . 
E 5 HOH A 65 1365 1365 HOH HOH . 
E 5 HOH A 66 1366 1366 HOH HOH . 
E 5 HOH A 67 1367 1367 HOH HOH . 
E 5 HOH A 68 1368 1368 HOH HOH . 
E 5 HOH A 69 1369 1369 HOH HOH . 
E 5 HOH A 70 1370 1370 HOH HOH . 
E 5 HOH A 71 1371 1371 HOH HOH . 
E 5 HOH A 72 1372 1372 HOH HOH . 
E 5 HOH A 73 1373 1373 HOH HOH . 
E 5 HOH A 74 1374 1374 HOH HOH . 
E 5 HOH A 75 1375 1375 HOH HOH . 
E 5 HOH A 76 1376 1376 HOH HOH . 
E 5 HOH A 77 1377 1377 HOH HOH . 
E 5 HOH A 78 1378 1378 HOH HOH . 
E 5 HOH A 79 1379 1379 HOH HOH . 
E 5 HOH A 80 1380 1380 HOH HOH . 
E 5 HOH A 81 1381 1381 HOH HOH . 
E 5 HOH A 82 1382 1382 HOH HOH . 
E 5 HOH A 83 1383 1383 HOH HOH . 
E 5 HOH A 84 1384 1384 HOH HOH . 
E 5 HOH A 85 1385 1385 HOH HOH . 
E 5 HOH A 86 1386 1386 HOH HOH . 
E 5 HOH A 87 1387 1387 HOH HOH . 
E 5 HOH A 88 1388 1388 HOH HOH . 
E 5 HOH A 89 1389 1389 HOH HOH . 
E 5 HOH A 90 1390 1390 HOH HOH . 
E 5 HOH A 91 1391 1391 HOH HOH . 
E 5 HOH A 92 1392 1392 HOH HOH . 
E 5 HOH A 93 1393 1393 HOH HOH . 
E 5 HOH A 94 1394 1394 HOH HOH . 
E 5 HOH A 95 1395 1395 HOH HOH . 
E 5 HOH A 96 1396 1396 HOH HOH . 
E 5 HOH A 97 1397 1397 HOH HOH . 
E 5 HOH A 98 1398 1398 HOH HOH . 
E 5 HOH A 99 1399 1399 HOH HOH . 
E 5 HOH A 100 1400 1400 HOH HOH . 
E 5 HOH A 101 1401 1401 HOH HOH . 
E 5 HOH A 102 1402 1402 HOH HOH . 
E 5 HOH A 103 1403 1403 HOH HOH . 
E 5 HOH A 104 1404 1404 HOH HOH . 
E 5 HOH A 105 1405 1405 HOH HOH . 
E 5 HOH A 106 1406 1406 HOH HOH . 
E 5 HOH A 107 1407 1407 HOH HOH . 
E 5 HOH A 108 1408 1408 HOH HOH . 
E 5 HOH A 109 1409 1409 HOH HOH . 
E 5 HOH A 110 1410 1410 HOH HOH . 
E 5 HOH A 111 1411 1411 HOH HOH . 
E 5 HOH A 112 1412 1412 HOH HOH . 
E 5 HOH A 113 1413 1413 HOH HOH . 
E 5 HOH A 114 1414 1414 HOH HOH . 
E 5 HOH A 115 1415 1415 HOH HOH . 
E 5 HOH A 116 1416 1416 HOH HOH . 
E 5 HOH A 117 1417 1417 HOH HOH . 
E 5 HOH A 118 1418 1418 HOH HOH . 
E 5 HOH A 119 1419 1419 HOH HOH . 
E 5 HOH A 120 1420 1420 HOH HOH . 
E 5 HOH A 121 1421 1421 HOH HOH . 
E 5 HOH A 122 1422 1422 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAW E0D . . . B 2 13.601 0.876 0.312 1 14.76 ? OAW E0D 1201 A 1 
HETATM 2 C CAV E0D . . . B 2 12.736 0.599 -0.524 1 14.47 ? CAV E0D 1201 A 1 
HETATM 3 O OAX E0D . . . B 2 11.967 1.436 -1.063 1 15.47 ? OAX E0D 1201 A 1 
HETATM 4 C CAR E0D . . . B 2 12.601 -0.904 -0.884 1 14.86 ? CAR E0D 1201 A 1 
HETATM 5 C CAQ E0D . . . B 2 13.881 -1.333 -1.532 1 14.73 ? CAQ E0D 1201 A 1 
HETATM 6 C CAS E0D . . . B 2 11.365 -1.169 -1.786 1 15.49 ? CAS E0D 1201 A 1 
HETATM 7 C CAT E0D . . . B 2 11.331 -2.677 -2.159 1 15.46 ? CAT E0D 1201 A 1 
HETATM 8 C CAU E0D . . . B 2 12.625 -3.051 -2.825 1 15.1 ? CAU E0D 1201 A 1 
HETATM 9 N NAO E0D . . . B 2 13.746 -2.782 -1.877 1 14.29 ? NAO E0D 1201 A 1 
HETATM 10 C C E0D . . . B 2 14.582 -3.729 -1.373 1 13.15 ? C E0D 1201 A 1 
HETATM 11 O O E0D . . . B 2 15.506 -3.468 -0.602 1 13.55 ? O E0D 1201 A 1 
HETATM 12 C CA E0D . . . B 2 14.328 -5.162 -1.83 1 12.36 ? CA E0D 1201 A 1 
HETATM 13 N N E0D . . . B 2 15.269 -6.107 -1.136 1 11.5 ? N E0D 1201 A 1 
HETATM 14 C CAH E0D . . . B 2 14.957 -6.843 -0.057 1 10.9 ? CAH E0D 1201 A 1 
HETATM 15 C CAE E0D . . . B 2 16.516 -6.413 -1.495 1 11.04 ? CAE E0D 1201 A 1 
HETATM 16 C CAF E0D . . . B 2 17.261 -5.948 -2.526 1 11.33 ? CAF E0D 1201 A 1 
HETATM 17 C CAA E0D . . . B 2 18.555 -6.404 -2.724 1 11.17 ? CAA E0D 1201 A 1 
HETATM 18 C CAB E0D . . . B 2 19.078 -7.345 -1.849 1 11.52 ? CAB E0D 1201 A 1 
HETATM 19 C CAC E0D . . . B 2 18.255 -7.787 -0.804 1 11.02 ? CAC E0D 1201 A 1 
HETATM 20 C CAD E0D . . . B 2 16.994 -7.336 -0.634 1 10.88 ? CAD E0D 1201 A 1 
HETATM 21 C CAG E0D . . . B 2 16.015 -7.6 0.28 1 10.49 ? CAG E0D 1201 A 1 
HETATM 22 C CAK E0D . . . B 2 16.055 -8.482 1.349 1 10.6 ? CAK E0D 1201 A 1 
HETATM 23 O OAM E0D . . . B 2 16.999 -9.239 1.595 1 10.47 ? OAM E0D 1201 A 1 
HETATM 24 C CAL E0D . . . B 2 14.867 -8.525 2.317 1 10.47 ? CAL E0D 1201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           24 
#