data_5XXS # _model_server_result.job_id g0OKUU1g2ecozr2p_MvKlw _model_server_result.datetime_utc '2024-10-28 02:22:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":202}' # _entry.id 5XXS # _exptl.entry_id 5XXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XXS _cell.length_a 54.58 _cell.length_b 57.444 _cell.length_c 74.528 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 36 A TYR 36 1_555 F NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc2 A O ASP 39 A ASP 39 1_555 F NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc3 A O ARG 42 A ARG 42 1_555 F NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc4 F NA NA . A NA 203 1_555 J O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc5 F NA NA . A NA 203 1_555 J O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 215 n n C1 C2 GOL sing 216 n n C1 H11 GOL sing 217 n n C1 H12 GOL sing 218 n n O1 HO1 GOL sing 219 n n C2 O2 GOL sing 220 n n C2 C3 GOL sing 221 n n C2 H2 GOL sing 222 n n O2 HO2 GOL sing 223 n n C3 O3 GOL sing 224 n n C3 H31 GOL sing 225 n n C3 H32 GOL sing 226 n n O3 HO3 GOL sing 227 n n # _atom_sites.entry_id 5XXS _atom_sites.fract_transf_matrix[1][1] 0.018322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 200 200 COA COA . D 3 GOL A 1 201 201 GOL GOL . E 3 GOL A 1 202 202 GOL GOL . F 4 NA A 1 203 203 NA NA . G 2 COA B 1 200 200 COA COA . H 3 GOL B 1 201 201 GOL GOL . I 3 GOL B 1 202 202 GOL GOL . J 5 HOH A 1 301 3 HOH HOH . J 5 HOH A 2 302 47 HOH HOH . J 5 HOH A 3 303 79 HOH HOH . J 5 HOH A 4 304 8 HOH HOH . J 5 HOH A 5 305 5 HOH HOH . J 5 HOH A 6 306 27 HOH HOH . J 5 HOH A 7 307 66 HOH HOH . J 5 HOH A 8 308 85 HOH HOH . J 5 HOH A 9 309 30 HOH HOH . J 5 HOH A 10 310 12 HOH HOH . J 5 HOH A 11 311 43 HOH HOH . J 5 HOH A 12 312 11 HOH HOH . J 5 HOH A 13 313 6 HOH HOH . J 5 HOH A 14 314 17 HOH HOH . J 5 HOH A 15 315 59 HOH HOH . J 5 HOH A 16 316 21 HOH HOH . J 5 HOH A 17 317 75 HOH HOH . J 5 HOH A 18 318 68 HOH HOH . J 5 HOH A 19 319 52 HOH HOH . J 5 HOH A 20 320 76 HOH HOH . J 5 HOH A 21 321 34 HOH HOH . J 5 HOH A 22 322 33 HOH HOH . J 5 HOH A 23 323 62 HOH HOH . J 5 HOH A 24 324 39 HOH HOH . J 5 HOH A 25 325 23 HOH HOH . J 5 HOH A 26 326 50 HOH HOH . J 5 HOH A 27 327 32 HOH HOH . J 5 HOH A 28 328 73 HOH HOH . J 5 HOH A 29 329 67 HOH HOH . J 5 HOH A 30 330 77 HOH HOH . J 5 HOH A 31 331 2 HOH HOH . J 5 HOH A 32 332 10 HOH HOH . J 5 HOH A 33 333 1 HOH HOH . J 5 HOH A 34 334 22 HOH HOH . J 5 HOH A 35 335 7 HOH HOH . J 5 HOH A 36 336 78 HOH HOH . J 5 HOH A 37 337 60 HOH HOH . J 5 HOH A 38 338 86 HOH HOH . J 5 HOH A 39 339 82 HOH HOH . J 5 HOH A 40 340 38 HOH HOH . J 5 HOH A 41 341 28 HOH HOH . J 5 HOH A 42 342 51 HOH HOH . J 5 HOH A 43 343 49 HOH HOH . J 5 HOH A 44 344 57 HOH HOH . J 5 HOH A 45 345 80 HOH HOH . J 5 HOH A 46 346 87 HOH HOH . J 5 HOH A 47 347 36 HOH HOH . J 5 HOH A 48 348 46 HOH HOH . J 5 HOH A 49 349 84 HOH HOH . J 5 HOH A 50 350 9 HOH HOH . J 5 HOH A 51 351 45 HOH HOH . J 5 HOH A 52 352 44 HOH HOH . K 5 HOH B 1 301 14 HOH HOH . K 5 HOH B 2 302 83 HOH HOH . K 5 HOH B 3 303 16 HOH HOH . K 5 HOH B 4 304 48 HOH HOH . K 5 HOH B 5 305 26 HOH HOH . K 5 HOH B 6 306 15 HOH HOH . K 5 HOH B 7 307 65 HOH HOH . K 5 HOH B 8 308 63 HOH HOH . K 5 HOH B 9 309 64 HOH HOH . K 5 HOH B 10 310 53 HOH HOH . K 5 HOH B 11 311 61 HOH HOH . K 5 HOH B 12 312 29 HOH HOH . K 5 HOH B 13 313 25 HOH HOH . K 5 HOH B 14 314 20 HOH HOH . K 5 HOH B 15 315 31 HOH HOH . K 5 HOH B 16 316 24 HOH HOH . K 5 HOH B 17 317 55 HOH HOH . K 5 HOH B 18 318 4 HOH HOH . K 5 HOH B 19 319 56 HOH HOH . K 5 HOH B 20 320 69 HOH HOH . K 5 HOH B 21 321 74 HOH HOH . K 5 HOH B 22 322 71 HOH HOH . K 5 HOH B 23 323 13 HOH HOH . K 5 HOH B 24 324 18 HOH HOH . K 5 HOH B 25 325 40 HOH HOH . K 5 HOH B 26 326 19 HOH HOH . K 5 HOH B 27 327 81 HOH HOH . K 5 HOH B 28 328 88 HOH HOH . K 5 HOH B 29 329 41 HOH HOH . K 5 HOH B 30 330 70 HOH HOH . K 5 HOH B 31 331 58 HOH HOH . K 5 HOH B 32 332 37 HOH HOH . K 5 HOH B 33 333 42 HOH HOH . K 5 HOH B 34 334 89 HOH HOH . K 5 HOH B 35 335 35 HOH HOH . K 5 HOH B 36 336 54 HOH HOH . K 5 HOH B 37 337 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 -15.912 0.925 52.988 1 81.23 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . I 3 -15.775 0.722 51.579 1 77.68 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . I 3 -14.685 0.393 53.728 1 83.45 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . I 3 -14.231 1.382 54.659 1 88.99 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . I 3 -15.013 -0.889 54.488 1 83.89 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . I 3 -13.808 -1.529 54.928 1 84.48 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #