data_5XYO # _model_server_result.job_id NVTGj_ZwC29ZAhYtZR8qGQ _model_server_result.datetime_utc '2024-10-19 06:40:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5XYO # _exptl.entry_id 5XYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XYO _cell.length_a 70.485 _cell.length_b 144.459 _cell.length_c 128.353 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 64.1765 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 303 n n S O2 SO4 doub 304 n n S O3 SO4 sing 305 n n S O4 SO4 sing 306 n n # _atom_sites.entry_id 5XYO _atom_sites.fract_transf_matrix[1][1] 0.014187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 2 SO4 SO4 . D 3 CL A 1 402 4 CL CL . E 4 GOL A 1 403 5 GOL GOL . F 2 SO4 B 1 401 1 SO4 SO4 . G 3 CL B 1 402 3 CL CL . H 5 HOH A 1 501 136 HOH HOH . H 5 HOH A 2 502 183 HOH HOH . H 5 HOH A 3 503 44 HOH HOH . H 5 HOH A 4 504 256 HOH HOH . H 5 HOH A 5 505 167 HOH HOH . H 5 HOH A 6 506 253 HOH HOH . H 5 HOH A 7 507 109 HOH HOH . H 5 HOH A 8 508 63 HOH HOH . H 5 HOH A 9 509 62 HOH HOH . H 5 HOH A 10 510 147 HOH HOH . H 5 HOH A 11 511 46 HOH HOH . H 5 HOH A 12 512 131 HOH HOH . H 5 HOH A 13 513 249 HOH HOH . H 5 HOH A 14 514 96 HOH HOH . H 5 HOH A 15 515 148 HOH HOH . H 5 HOH A 16 516 196 HOH HOH . H 5 HOH A 17 517 162 HOH HOH . H 5 HOH A 18 518 179 HOH HOH . H 5 HOH A 19 519 165 HOH HOH . H 5 HOH A 20 520 289 HOH HOH . H 5 HOH A 21 521 141 HOH HOH . H 5 HOH A 22 522 122 HOH HOH . H 5 HOH A 23 523 37 HOH HOH . H 5 HOH A 24 524 130 HOH HOH . H 5 HOH A 25 525 67 HOH HOH . H 5 HOH A 26 526 121 HOH HOH . H 5 HOH A 27 527 197 HOH HOH . H 5 HOH A 28 528 108 HOH HOH . H 5 HOH A 29 529 13 HOH HOH . H 5 HOH A 30 530 68 HOH HOH . H 5 HOH A 31 531 180 HOH HOH . H 5 HOH A 32 532 146 HOH HOH . H 5 HOH A 33 533 169 HOH HOH . H 5 HOH A 34 534 21 HOH HOH . H 5 HOH A 35 535 191 HOH HOH . H 5 HOH A 36 536 298 HOH HOH . H 5 HOH A 37 537 22 HOH HOH . H 5 HOH A 38 538 250 HOH HOH . H 5 HOH A 39 539 258 HOH HOH . H 5 HOH A 40 540 164 HOH HOH . H 5 HOH A 41 541 257 HOH HOH . H 5 HOH A 42 542 272 HOH HOH . H 5 HOH A 43 543 206 HOH HOH . H 5 HOH A 44 544 35 HOH HOH . H 5 HOH A 45 545 125 HOH HOH . H 5 HOH A 46 546 223 HOH HOH . H 5 HOH A 47 547 214 HOH HOH . H 5 HOH A 48 548 27 HOH HOH . H 5 HOH A 49 549 132 HOH HOH . H 5 HOH A 50 550 15 HOH HOH . H 5 HOH A 51 551 215 HOH HOH . H 5 HOH A 52 552 51 HOH HOH . H 5 HOH A 53 553 64 HOH HOH . H 5 HOH A 54 554 297 HOH HOH . H 5 HOH A 55 555 41 HOH HOH . H 5 HOH A 56 556 247 HOH HOH . H 5 HOH A 57 557 203 HOH HOH . H 5 HOH A 58 558 195 HOH HOH . H 5 HOH A 59 559 175 HOH HOH . H 5 HOH A 60 560 54 HOH HOH . H 5 HOH A 61 561 124 HOH HOH . H 5 HOH A 62 562 97 HOH HOH . H 5 HOH A 63 563 10 HOH HOH . H 5 HOH A 64 564 128 HOH HOH . H 5 HOH A 65 565 135 HOH HOH . H 5 HOH A 66 566 74 HOH HOH . H 5 HOH A 67 567 79 HOH HOH . H 5 HOH A 68 568 53 HOH HOH . H 5 HOH A 69 569 221 HOH HOH . H 5 HOH A 70 570 138 HOH HOH . H 5 HOH A 71 571 187 HOH HOH . H 5 HOH A 72 572 190 HOH HOH . H 5 HOH A 73 573 59 HOH HOH . H 5 HOH A 74 574 39 HOH HOH . H 5 HOH A 75 575 204 HOH HOH . H 5 HOH A 76 576 166 HOH HOH . H 5 HOH A 77 577 81 HOH HOH . H 5 HOH A 78 578 149 HOH HOH . H 5 HOH A 79 579 76 HOH HOH . H 5 HOH A 80 580 163 HOH HOH . H 5 HOH A 81 581 134 HOH HOH . H 5 HOH A 82 582 137 HOH HOH . H 5 HOH A 83 583 145 HOH HOH . H 5 HOH A 84 584 216 HOH HOH . H 5 HOH A 85 585 182 HOH HOH . H 5 HOH A 86 586 93 HOH HOH . H 5 HOH A 87 587 115 HOH HOH . H 5 HOH A 88 588 189 HOH HOH . H 5 HOH A 89 589 168 HOH HOH . H 5 HOH A 90 590 100 HOH HOH . H 5 HOH A 91 591 222 HOH HOH . H 5 HOH A 92 592 273 HOH HOH . H 5 HOH A 93 593 89 HOH HOH . H 5 HOH A 94 594 140 HOH HOH . H 5 HOH A 95 595 116 HOH HOH . H 5 HOH A 96 596 219 HOH HOH . H 5 HOH A 97 597 287 HOH HOH . H 5 HOH A 98 598 218 HOH HOH . H 5 HOH A 99 599 12 HOH HOH . H 5 HOH A 100 600 83 HOH HOH . H 5 HOH A 101 601 31 HOH HOH . H 5 HOH A 102 602 66 HOH HOH . H 5 HOH A 103 603 192 HOH HOH . H 5 HOH A 104 604 78 HOH HOH . H 5 HOH A 105 605 36 HOH HOH . H 5 HOH A 106 606 143 HOH HOH . H 5 HOH A 107 607 126 HOH HOH . H 5 HOH A 108 608 16 HOH HOH . H 5 HOH A 109 609 267 HOH HOH . H 5 HOH A 110 610 260 HOH HOH . H 5 HOH A 111 611 42 HOH HOH . H 5 HOH A 112 612 113 HOH HOH . H 5 HOH A 113 613 184 HOH HOH . H 5 HOH A 114 614 266 HOH HOH . H 5 HOH A 115 615 290 HOH HOH . H 5 HOH A 116 616 55 HOH HOH . H 5 HOH A 117 617 101 HOH HOH . H 5 HOH A 118 618 276 HOH HOH . H 5 HOH A 119 619 20 HOH HOH . H 5 HOH A 120 620 288 HOH HOH . H 5 HOH A 121 621 144 HOH HOH . H 5 HOH A 122 622 142 HOH HOH . H 5 HOH A 123 623 4 HOH HOH . H 5 HOH A 124 624 103 HOH HOH . H 5 HOH A 125 625 102 HOH HOH . H 5 HOH A 126 626 3 HOH HOH . H 5 HOH A 127 627 207 HOH HOH . H 5 HOH A 128 628 75 HOH HOH . H 5 HOH A 129 629 71 HOH HOH . H 5 HOH A 130 630 198 HOH HOH . H 5 HOH A 131 631 251 HOH HOH . H 5 HOH A 132 632 153 HOH HOH . H 5 HOH A 133 633 255 HOH HOH . H 5 HOH A 134 634 174 HOH HOH . H 5 HOH A 135 635 193 HOH HOH . H 5 HOH A 136 636 277 HOH HOH . H 5 HOH A 137 637 65 HOH HOH . H 5 HOH A 138 638 181 HOH HOH . H 5 HOH A 139 639 212 HOH HOH . H 5 HOH A 140 640 112 HOH HOH . H 5 HOH A 141 641 291 HOH HOH . H 5 HOH A 142 642 127 HOH HOH . H 5 HOH A 143 643 271 HOH HOH . H 5 HOH A 144 644 107 HOH HOH . H 5 HOH A 145 645 60 HOH HOH . H 5 HOH A 146 646 188 HOH HOH . H 5 HOH A 147 647 185 HOH HOH . H 5 HOH A 148 648 217 HOH HOH . H 5 HOH A 149 649 265 HOH HOH . H 5 HOH A 150 650 129 HOH HOH . H 5 HOH A 151 651 99 HOH HOH . H 5 HOH A 152 652 170 HOH HOH . H 5 HOH A 153 653 92 HOH HOH . H 5 HOH A 154 654 194 HOH HOH . H 5 HOH A 155 655 98 HOH HOH . H 5 HOH A 156 656 248 HOH HOH . H 5 HOH A 157 657 139 HOH HOH . H 5 HOH A 158 658 186 HOH HOH . H 5 HOH A 159 659 69 HOH HOH . H 5 HOH A 160 660 123 HOH HOH . H 5 HOH A 161 661 84 HOH HOH . H 5 HOH A 162 662 259 HOH HOH . H 5 HOH A 163 663 85 HOH HOH . I 5 HOH B 1 501 296 HOH HOH . I 5 HOH B 2 502 305 HOH HOH . I 5 HOH B 3 503 73 HOH HOH . I 5 HOH B 4 504 242 HOH HOH . I 5 HOH B 5 505 309 HOH HOH . I 5 HOH B 6 506 294 HOH HOH . I 5 HOH B 7 507 237 HOH HOH . I 5 HOH B 8 508 201 HOH HOH . I 5 HOH B 9 509 278 HOH HOH . I 5 HOH B 10 510 211 HOH HOH . I 5 HOH B 11 511 24 HOH HOH . I 5 HOH B 12 512 241 HOH HOH . I 5 HOH B 13 513 6 HOH HOH . I 5 HOH B 14 514 316 HOH HOH . I 5 HOH B 15 515 106 HOH HOH . I 5 HOH B 16 516 227 HOH HOH . I 5 HOH B 17 517 47 HOH HOH . I 5 HOH B 18 518 275 HOH HOH . I 5 HOH B 19 519 282 HOH HOH . I 5 HOH B 20 520 172 HOH HOH . I 5 HOH B 21 521 8 HOH HOH . I 5 HOH B 22 522 178 HOH HOH . I 5 HOH B 23 523 48 HOH HOH . I 5 HOH B 24 524 311 HOH HOH . I 5 HOH B 25 525 150 HOH HOH . I 5 HOH B 26 526 240 HOH HOH . I 5 HOH B 27 527 28 HOH HOH . I 5 HOH B 28 528 33 HOH HOH . I 5 HOH B 29 529 77 HOH HOH . I 5 HOH B 30 530 40 HOH HOH . I 5 HOH B 31 531 110 HOH HOH . I 5 HOH B 32 532 1 HOH HOH . I 5 HOH B 33 533 26 HOH HOH . I 5 HOH B 34 534 49 HOH HOH . I 5 HOH B 35 535 161 HOH HOH . I 5 HOH B 36 536 43 HOH HOH . I 5 HOH B 37 537 264 HOH HOH . I 5 HOH B 38 538 105 HOH HOH . I 5 HOH B 39 539 200 HOH HOH . I 5 HOH B 40 540 269 HOH HOH . I 5 HOH B 41 541 70 HOH HOH . I 5 HOH B 42 542 2 HOH HOH . I 5 HOH B 43 543 7 HOH HOH . I 5 HOH B 44 544 17 HOH HOH . I 5 HOH B 45 545 199 HOH HOH . I 5 HOH B 46 546 312 HOH HOH . I 5 HOH B 47 547 11 HOH HOH . I 5 HOH B 48 548 86 HOH HOH . I 5 HOH B 49 549 80 HOH HOH . I 5 HOH B 50 550 173 HOH HOH . I 5 HOH B 51 551 52 HOH HOH . I 5 HOH B 52 552 314 HOH HOH . I 5 HOH B 53 553 274 HOH HOH . I 5 HOH B 54 554 30 HOH HOH . I 5 HOH B 55 555 18 HOH HOH . I 5 HOH B 56 556 159 HOH HOH . I 5 HOH B 57 557 56 HOH HOH . I 5 HOH B 58 558 285 HOH HOH . I 5 HOH B 59 559 302 HOH HOH . I 5 HOH B 60 560 87 HOH HOH . I 5 HOH B 61 561 281 HOH HOH . I 5 HOH B 62 562 23 HOH HOH . I 5 HOH B 63 563 119 HOH HOH . I 5 HOH B 64 564 313 HOH HOH . I 5 HOH B 65 565 225 HOH HOH . I 5 HOH B 66 566 176 HOH HOH . I 5 HOH B 67 567 171 HOH HOH . I 5 HOH B 68 568 254 HOH HOH . I 5 HOH B 69 569 34 HOH HOH . I 5 HOH B 70 570 88 HOH HOH . I 5 HOH B 71 571 114 HOH HOH . I 5 HOH B 72 572 224 HOH HOH . I 5 HOH B 73 573 210 HOH HOH . I 5 HOH B 74 574 315 HOH HOH . I 5 HOH B 75 575 95 HOH HOH . I 5 HOH B 76 576 177 HOH HOH . I 5 HOH B 77 577 202 HOH HOH . I 5 HOH B 78 578 245 HOH HOH . I 5 HOH B 79 579 50 HOH HOH . I 5 HOH B 80 580 280 HOH HOH . I 5 HOH B 81 581 283 HOH HOH . I 5 HOH B 82 582 57 HOH HOH . I 5 HOH B 83 583 244 HOH HOH . I 5 HOH B 84 584 58 HOH HOH . I 5 HOH B 85 585 154 HOH HOH . I 5 HOH B 86 586 82 HOH HOH . I 5 HOH B 87 587 32 HOH HOH . I 5 HOH B 88 588 220 HOH HOH . I 5 HOH B 89 589 157 HOH HOH . I 5 HOH B 90 590 284 HOH HOH . I 5 HOH B 91 591 25 HOH HOH . I 5 HOH B 92 592 38 HOH HOH . I 5 HOH B 93 593 160 HOH HOH . I 5 HOH B 94 594 295 HOH HOH . I 5 HOH B 95 595 158 HOH HOH . I 5 HOH B 96 596 236 HOH HOH . I 5 HOH B 97 597 205 HOH HOH . I 5 HOH B 98 598 293 HOH HOH . I 5 HOH B 99 599 235 HOH HOH . I 5 HOH B 100 600 19 HOH HOH . I 5 HOH B 101 601 61 HOH HOH . I 5 HOH B 102 602 263 HOH HOH . I 5 HOH B 103 603 262 HOH HOH . I 5 HOH B 104 604 230 HOH HOH . I 5 HOH B 105 605 151 HOH HOH . I 5 HOH B 106 606 310 HOH HOH . I 5 HOH B 107 607 239 HOH HOH . I 5 HOH B 108 608 45 HOH HOH . I 5 HOH B 109 609 292 HOH HOH . I 5 HOH B 110 610 111 HOH HOH . I 5 HOH B 111 611 104 HOH HOH . I 5 HOH B 112 612 152 HOH HOH . I 5 HOH B 113 613 268 HOH HOH . I 5 HOH B 114 614 234 HOH HOH . I 5 HOH B 115 615 90 HOH HOH . I 5 HOH B 116 616 209 HOH HOH . I 5 HOH B 117 617 233 HOH HOH . I 5 HOH B 118 618 252 HOH HOH . I 5 HOH B 119 619 29 HOH HOH . I 5 HOH B 120 620 317 HOH HOH . I 5 HOH B 121 621 91 HOH HOH . I 5 HOH B 122 622 9 HOH HOH . I 5 HOH B 123 623 286 HOH HOH . I 5 HOH B 124 624 228 HOH HOH . I 5 HOH B 125 625 303 HOH HOH . I 5 HOH B 126 626 306 HOH HOH . I 5 HOH B 127 627 213 HOH HOH . I 5 HOH B 128 628 5 HOH HOH . I 5 HOH B 129 629 243 HOH HOH . I 5 HOH B 130 630 120 HOH HOH . I 5 HOH B 131 631 118 HOH HOH . I 5 HOH B 132 632 279 HOH HOH . I 5 HOH B 133 633 72 HOH HOH . I 5 HOH B 134 634 270 HOH HOH . I 5 HOH B 135 635 94 HOH HOH . I 5 HOH B 136 636 229 HOH HOH . I 5 HOH B 137 637 261 HOH HOH . I 5 HOH B 138 638 14 HOH HOH . I 5 HOH B 139 639 156 HOH HOH . I 5 HOH B 140 640 232 HOH HOH . I 5 HOH B 141 641 246 HOH HOH . I 5 HOH B 142 642 208 HOH HOH . I 5 HOH B 143 643 301 HOH HOH . I 5 HOH B 144 644 307 HOH HOH . I 5 HOH B 145 645 300 HOH HOH . I 5 HOH B 146 646 155 HOH HOH . I 5 HOH B 147 647 133 HOH HOH . I 5 HOH B 148 648 308 HOH HOH . I 5 HOH B 149 649 238 HOH HOH . I 5 HOH B 150 650 304 HOH HOH . I 5 HOH B 151 651 226 HOH HOH . I 5 HOH B 152 652 117 HOH HOH . I 5 HOH B 153 653 231 HOH HOH . I 5 HOH B 154 654 299 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 2 20.009 -44.014 23.772 1 85.07 ? S SO4 401 A 1 HETATM 2 O O1 SO4 . . . C 2 21.182 -44.756 23.313 1 88.05 ? O1 SO4 401 A 1 HETATM 3 O O2 SO4 . . . C 2 19.953 -42.731 23.069 1 82.45 ? O2 SO4 401 A 1 HETATM 4 O O3 SO4 . . . C 2 20.098 -43.792 25.215 1 83.73 ? O3 SO4 401 A 1 HETATM 5 O O4 SO4 . . . C 2 18.817 -44.811 23.491 1 82.44 ? O4 SO4 401 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #