data_5XYZ # _model_server_result.job_id kthPRu9VkFTopibqr6p7LQ _model_server_result.datetime_utc '2024-11-04 20:37:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xyz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 5XYZ # _exptl.entry_id 5XYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.812 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-(5-{[(2-chloro-6-fluorophenyl)methyl]amino}-1H-1,2,4-triazol-3-yl)phenyl]propanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.04 _cell.angle_gamma 90 _cell.entry_id 5XYZ _cell.length_a 59.59 _cell.length_b 53.6 _cell.length_c 101.635 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 90 A CYS 481 1_555 C C37 GYL . A GYL 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? covale ? covale2 B SG CYS 90 B CYS 481 1_555 D C37 GYL . B GYL 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? # _chem_comp.formula 'C18 H17 Cl F N5 O' _chem_comp.formula_weight 373.812 _chem_comp.id GYL _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-(5-{[(2-chloro-6-fluorophenyl)methyl]amino}-1H-1,2,4-triazol-3-yl)phenyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F9 C3 GYL sing 129 n n C4 C3 GYL doub 130 n y C4 C5 GYL sing 131 n y C3 C2 GYL sing 132 n y C37 C38 GYL sing 133 n n N21 N20 GYL sing 134 n y N21 C17 GYL sing 135 n y N15 C17 GYL sing 136 n n N15 C8 GYL sing 137 n n C5 C6 GYL doub 138 n y N20 C19 GYL doub 139 n y C17 N18 GYL doub 140 n y C2 C8 GYL sing 141 n n C2 C1 GYL doub 142 n y C19 N18 GYL sing 143 n y C19 C26 GYL sing 144 n n C25 C26 GYL doub 145 n y C25 C24 GYL sing 146 n y C38 C33 GYL sing 147 n n N34 C24 GYL sing 148 n n N34 C33 GYL sing 149 n n C26 C27 GYL sing 150 n y C24 C23 GYL doub 151 n y C33 O35 GYL doub 152 n n C27 C28 GYL doub 153 n y C23 C28 GYL sing 154 n y C6 C1 GYL sing 155 n y C1 CL7 GYL sing 156 n n C4 H1 GYL sing 157 n n C5 H2 GYL sing 158 n n C6 H3 GYL sing 159 n n C37 H4 GYL sing 160 n n C37 H5 GYL sing 161 n n C37 H6 GYL sing 162 n n C38 H7 GYL sing 163 n n C38 H8 GYL sing 164 n n N34 H9 GYL sing 165 n n C25 H10 GYL sing 166 n n C23 H11 GYL sing 167 n n C28 H12 GYL sing 168 n n C27 H13 GYL sing 169 n n C8 H15 GYL sing 170 n n N21 H14 GYL sing 171 n n N15 H16 GYL sing 172 n n C8 H17 GYL sing 173 n n # _atom_sites.entry_id 5XYZ _atom_sites.fract_transf_matrix[1][1] 0.016781 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002972 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GYL A 1 701 1 GYL DRG . D 2 GYL B 1 701 2 GYL DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GYL . . . C 2 -9.555 -9.372 -37.485 1 72.03 ? C1 GYL 701 A 1 HETATM 2 C C2 GYL . . . C 2 -9.352 -10.086 -36.297 1 67.55 ? C2 GYL 701 A 1 HETATM 3 C C3 GYL . . . C 2 -9.634 -9.437 -35.094 1 64.29 ? C3 GYL 701 A 1 HETATM 4 C C4 GYL . . . C 2 -10.093 -8.125 -35.089 1 64.37 ? C4 GYL 701 A 1 HETATM 5 C C5 GYL . . . C 2 -10.288 -7.431 -36.27 1 67.53 ? C5 GYL 701 A 1 HETATM 6 C C6 GYL . . . C 2 -10.017 -8.058 -37.474 1 68.96 ? C6 GYL 701 A 1 HETATM 7 C C37 GYL . . . C 2 -9.611 -20.457 -34.183 1 62.06 ? C37 GYL 701 A 1 HETATM 8 C C38 GYL . . . C 2 -9.487 -20.664 -35.7 1 56.12 ? C38 GYL 701 A 1 HETATM 9 C C33 GYL . . . C 2 -8.17 -19.991 -36.041 1 58.63 ? C33 GYL 701 A 1 HETATM 10 O O35 GYL . . . C 2 -7.119 -20.509 -35.646 1 57.71 ? O35 GYL 701 A 1 HETATM 11 N N34 GYL . . . C 2 -8.275 -18.828 -36.767 1 60.26 ? N34 GYL 701 A 1 HETATM 12 C C24 GYL . . . C 2 -7.18 -18.086 -37.124 1 57.89 ? C24 GYL 701 A 1 HETATM 13 C C25 GYL . . . C 2 -7.225 -16.673 -37.008 1 57.07 ? C25 GYL 701 A 1 HETATM 14 C C23 GYL . . . C 2 -6.021 -18.675 -37.637 1 51.71 ? C23 GYL 701 A 1 HETATM 15 C C28 GYL . . . C 2 -4.949 -17.87 -37.989 1 51.95 ? C28 GYL 701 A 1 HETATM 16 C C27 GYL . . . C 2 -4.996 -16.493 -37.855 1 53.12 ? C27 GYL 701 A 1 HETATM 17 C C26 GYL . . . C 2 -6.134 -15.848 -37.354 1 55.63 ? C26 GYL 701 A 1 HETATM 18 C C19 GYL . . . C 2 -6.168 -14.492 -37.258 1 61.99 ? C19 GYL 701 A 1 HETATM 19 N N18 GYL . . . C 2 -7.224 -13.746 -36.923 1 69.88 ? N18 GYL 701 A 1 HETATM 20 N N20 GYL . . . C 2 -5.16 -13.643 -37.548 1 64.21 ? N20 GYL 701 A 1 HETATM 21 N N21 GYL . . . C 2 -5.503 -12.486 -37.401 1 63.96 ? N21 GYL 701 A 1 HETATM 22 C C17 GYL . . . C 2 -6.781 -12.486 -37.016 1 70.86 ? C17 GYL 701 A 1 HETATM 23 N N15 GYL . . . C 2 -7.48 -11.375 -36.745 1 69.88 ? N15 GYL 701 A 1 HETATM 24 C C8 GYL . . . C 2 -8.893 -11.403 -36.312 1 68.32 ? C8 GYL 701 A 1 HETATM 25 CL CL7 GYL . . . C 2 -9.227 -10.07 -38.999 1 81.96 ? CL7 GYL 701 A 1 HETATM 26 F F9 GYL . . . C 2 -9.468 -10.018 -34.002 1 62.09 ? F9 GYL 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #