data_5XYZ
#
_model_server_result.job_id            2zBepaEtPcz2Yrsm-SN3DQ 
_model_server_result.datetime_utc      '2024-11-04 20:36:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xyz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    5XYZ 
#
_exptl.entry_id    5XYZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              373.812 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[3-(5-{[(2-chloro-6-fluorophenyl)methyl]amino}-1H-1,2,4-triazol-3-yl)phenyl]propanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.04 
_cell.angle_gamma         90 
_cell.entry_id            5XYZ 
_cell.length_a            59.59 
_cell.length_b            53.6 
_cell.length_c            101.635 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XYZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 90 A CYS 481 1_555 C C37 GYL . A GYL 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? 
covale ? covale2 B SG CYS 90 B CYS 481 1_555 D C37 GYL . B GYL 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? 
#
_chem_comp.formula           'C18 H17 Cl F N5 O' 
_chem_comp.formula_weight    373.812 
_chem_comp.id                GYL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[3-(5-{[(2-chloro-6-fluorophenyl)methyl]amino}-1H-1,2,4-triazol-3-yl)phenyl]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F9 C3 GYL sing 129 n n 
C4 C3 GYL doub 130 n y 
C4 C5 GYL sing 131 n y 
C3 C2 GYL sing 132 n y 
C37 C38 GYL sing 133 n n 
N21 N20 GYL sing 134 n y 
N21 C17 GYL sing 135 n y 
N15 C17 GYL sing 136 n n 
N15 C8 GYL sing 137 n n 
C5 C6 GYL doub 138 n y 
N20 C19 GYL doub 139 n y 
C17 N18 GYL doub 140 n y 
C2 C8 GYL sing 141 n n 
C2 C1 GYL doub 142 n y 
C19 N18 GYL sing 143 n y 
C19 C26 GYL sing 144 n n 
C25 C26 GYL doub 145 n y 
C25 C24 GYL sing 146 n y 
C38 C33 GYL sing 147 n n 
N34 C24 GYL sing 148 n n 
N34 C33 GYL sing 149 n n 
C26 C27 GYL sing 150 n y 
C24 C23 GYL doub 151 n y 
C33 O35 GYL doub 152 n n 
C27 C28 GYL doub 153 n y 
C23 C28 GYL sing 154 n y 
C6 C1 GYL sing 155 n y 
C1 CL7 GYL sing 156 n n 
C4 H1 GYL sing 157 n n 
C5 H2 GYL sing 158 n n 
C6 H3 GYL sing 159 n n 
C37 H4 GYL sing 160 n n 
C37 H5 GYL sing 161 n n 
C37 H6 GYL sing 162 n n 
C38 H7 GYL sing 163 n n 
C38 H8 GYL sing 164 n n 
N34 H9 GYL sing 165 n n 
C25 H10 GYL sing 166 n n 
C23 H11 GYL sing 167 n n 
C28 H12 GYL sing 168 n n 
C27 H13 GYL sing 169 n n 
C8 H15 GYL sing 170 n n 
N21 H14 GYL sing 171 n n 
N15 H16 GYL sing 172 n n 
C8 H17 GYL sing 173 n n 
#
_atom_sites.entry_id                     5XYZ 
_atom_sites.fract_transf_matrix[1][1]    0.016781 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002972 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018657 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009992 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GYL A 1 701 1 GYL DRG . 
D 2 GYL B 1 701 2 GYL DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GYL . . . D 2 17.136 6.806 -34.144 1 69.84 ? C1 GYL 701 B 1 
HETATM 2 C C2 GYL . . . D 2 16.875 6.905 -32.762 1 66.01 ? C2 GYL 701 B 1 
HETATM 3 C C3 GYL . . . D 2 17.134 5.785 -31.948 1 63.06 ? C3 GYL 701 B 1 
HETATM 4 C C4 GYL . . . D 2 17.645 4.596 -32.482 1 58.81 ? C4 GYL 701 B 1 
HETATM 5 C C5 GYL . . . D 2 17.896 4.512 -33.85 1 61.1 ? C5 GYL 701 B 1 
HETATM 6 C C6 GYL . . . D 2 17.642 5.609 -34.684 1 65 ? C6 GYL 701 B 1 
HETATM 7 C C37 GYL . . . D 2 17.603 15.24 -27.241 1 64.46 ? C37 GYL 701 B 1 
HETATM 8 C C38 GYL . . . D 2 17.207 16.398 -28.164 1 60.52 ? C38 GYL 701 B 1 
HETATM 9 C C33 GYL . . . D 2 15.862 16.015 -28.715 1 59.47 ? C33 GYL 701 B 1 
HETATM 10 O O35 GYL . . . D 2 14.868 16.534 -28.215 1 60.94 ? O35 GYL 701 B 1 
HETATM 11 N N34 GYL . . . D 2 15.892 15.078 -29.706 1 60.09 ? N34 GYL 701 B 1 
HETATM 12 C C24 GYL . . . D 2 14.777 14.579 -30.304 1 57.76 ? C24 GYL 701 B 1 
HETATM 13 C C25 GYL . . . D 2 14.813 13.23 -30.764 1 56.75 ? C25 GYL 701 B 1 
HETATM 14 C C23 GYL . . . D 2 13.615 15.341 -30.521 1 55.16 ? C23 GYL 701 B 1 
HETATM 15 C C28 GYL . . . D 2 12.523 14.749 -31.155 1 57.63 ? C28 GYL 701 B 1 
HETATM 16 C C27 GYL . . . D 2 12.574 13.414 -31.603 1 57.02 ? C27 GYL 701 B 1 
HETATM 17 C C26 GYL . . . D 2 13.715 12.616 -31.412 1 53.53 ? C26 GYL 701 B 1 
HETATM 18 C C19 GYL . . . D 2 13.747 11.343 -31.865 1 52.73 ? C19 GYL 701 B 1 
HETATM 19 N N18 GYL . . . D 2 14.811 10.546 -31.904 1 55.75 ? N18 GYL 701 B 1 
HETATM 20 N N20 GYL . . . D 2 12.721 10.65 -32.407 1 55.01 ? N20 GYL 701 B 1 
HETATM 21 N N21 GYL . . . D 2 13.058 9.502 -32.745 1 53.08 ? N21 GYL 701 B 1 
HETATM 22 C C17 GYL . . . D 2 14.347 9.413 -32.456 1 58.99 ? C17 GYL 701 B 1 
HETATM 23 N N15 GYL . . . D 2 15.027 8.307 -32.701 1 61.3 ? N15 GYL 701 B 1 
HETATM 24 C C8 GYL . . . D 2 16.394 8.099 -32.216 1 60.26 ? C8 GYL 701 B 1 
HETATM 25 CL CL7 GYL . . . D 2 16.804 8.194 -35.167 1 70.62 ? CL7 GYL 701 B 1 
HETATM 26 F F9 GYL . . . D 2 16.899 5.861 -30.717 1 61.79 ? F9 GYL 701 B 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#