data_5XZ6 # _model_server_result.job_id FYGCiUIT7dfTk-ewnL1PLg _model_server_result.datetime_utc '2024-12-03 04:27:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5XZ6 # _exptl.entry_id 5XZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.36 _cell.angle_gamma 90 _cell.entry_id 5XZ6 _cell.length_a 89.41 _cell.length_b 37.01 _cell.length_c 101.135 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5XZ6 _atom_sites.fract_transf_matrix[1][1] 0.011184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 3 ANP A 1 402 1 ANP ANP . D 4 HOH A 1 501 12 HOH HOH . D 4 HOH A 2 502 17 HOH HOH . D 4 HOH A 3 503 6 HOH HOH . D 4 HOH A 4 504 9 HOH HOH . D 4 HOH A 5 505 13 HOH HOH . D 4 HOH A 6 506 4 HOH HOH . D 4 HOH A 7 507 3 HOH HOH . D 4 HOH A 8 508 14 HOH HOH . D 4 HOH A 9 509 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -0.092 -16.104 20.441 1 33.08 ? PG ANP 402 A 1 HETATM 2 O O1G ANP . . . C 3 0.188 -15.341 21.718 1 32.61 ? O1G ANP 402 A 1 HETATM 3 O O2G ANP . . . C 3 0.703 -17.392 20.291 1 35.55 ? O2G ANP 402 A 1 HETATM 4 O O3G ANP . . . C 3 -0.2 -15.265 19.193 1 31.97 ? O3G ANP 402 A 1 HETATM 5 P PB ANP . . . C 3 -2.012 -17.918 21.84 1 27.49 ? PB ANP 402 A 1 HETATM 6 O O1B ANP . . . C 3 -0.836 -18.875 21.977 1 28.19 ? O1B ANP 402 A 1 HETATM 7 O O2B ANP . . . C 3 -3.365 -18.477 21.548 1 27.67 ? O2B ANP 402 A 1 HETATM 8 N N3B ANP . . . C 3 -1.708 -16.668 20.692 1 30.37 ? N3B ANP 402 A 1 HETATM 9 P PA ANP . . . C 3 -1.644 -17.076 24.579 1 31.91 ? PA ANP 402 A 1 HETATM 10 O O1A ANP . . . C 3 -1.052 -15.665 24.559 1 32.06 ? O1A ANP 402 A 1 HETATM 11 O O2A ANP . . . C 3 -0.872 -18.353 24.856 1 27.53 ? O2A ANP 402 A 1 HETATM 12 O O3A ANP . . . C 3 -2.427 -17.186 23.181 1 30.01 ? O3A ANP 402 A 1 HETATM 13 O O5' ANP . . . C 3 -2.905 -16.936 25.547 1 29.92 ? O5' ANP 402 A 1 HETATM 14 C C5' ANP . . . C 3 -4.126 -17.563 25.208 1 29.18 ? C5' ANP 402 A 1 HETATM 15 C C4' ANP . . . C 3 -5.065 -17.522 26.396 1 29.37 ? C4' ANP 402 A 1 HETATM 16 O O4' ANP . . . C 3 -5.643 -18.831 26.501 1 30.04 ? O4' ANP 402 A 1 HETATM 17 C C3' ANP . . . C 3 -4.471 -17.198 27.768 1 28.14 ? C3' ANP 402 A 1 HETATM 18 O O3' ANP . . . C 3 -4.58 -15.841 28.129 1 28.11 ? O3' ANP 402 A 1 HETATM 19 C C2' ANP . . . C 3 -5.346 -18.017 28.653 1 28.44 ? C2' ANP 402 A 1 HETATM 20 O O2' ANP . . . C 3 -6.547 -17.268 28.848 1 28.06 ? O2' ANP 402 A 1 HETATM 21 C C1' ANP . . . C 3 -5.615 -19.273 27.847 1 28.88 ? C1' ANP 402 A 1 HETATM 22 N N9 ANP . . . C 3 -4.516 -20.241 27.955 1 29.31 ? N9 ANP 402 A 1 HETATM 23 C C8 ANP . . . C 3 -3.288 -20.116 27.398 1 31.13 ? C8 ANP 402 A 1 HETATM 24 N N7 ANP . . . C 3 -2.5 -21.176 27.68 1 32.85 ? N7 ANP 402 A 1 HETATM 25 C C5 ANP . . . C 3 -3.236 -21.997 28.429 1 30.73 ? C5 ANP 402 A 1 HETATM 26 C C6 ANP . . . C 3 -2.954 -23.282 29.044 1 30.95 ? C6 ANP 402 A 1 HETATM 27 N N6 ANP . . . C 3 -1.722 -23.822 28.858 1 30.92 ? N6 ANP 402 A 1 HETATM 28 N N1 ANP . . . C 3 -3.961 -23.844 29.764 1 31.89 ? N1 ANP 402 A 1 HETATM 29 C C2 ANP . . . C 3 -5.177 -23.249 29.905 1 30.84 ? C2 ANP 402 A 1 HETATM 30 N N3 ANP . . . C 3 -5.487 -22.055 29.357 1 29.13 ? N3 ANP 402 A 1 HETATM 31 C C4 ANP . . . C 3 -4.568 -21.396 28.615 1 29.68 ? C4 ANP 402 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #