data_5XZ7 # _model_server_result.job_id B4xvl4CjFNAJk0Yj4tHeaA _model_server_result.datetime_utc '2024-12-01 11:29:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5XZ7 # _exptl.entry_id 5XZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XZ7 _cell.length_a 73.56 _cell.length_b 80.2 _cell.length_c 121.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 73.56 80.2 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 158 n n C1 C2 GOL sing 159 n n C1 H11 GOL sing 160 n n C1 H12 GOL sing 161 n n O1 HO1 GOL sing 162 n n C2 O2 GOL sing 163 n n C2 C3 GOL sing 164 n n C2 H2 GOL sing 165 n n O2 HO2 GOL sing 166 n n C3 O3 GOL sing 167 n n C3 H31 GOL sing 168 n n C3 H32 GOL sing 169 n n O3 HO3 GOL sing 170 n n # _atom_sites.entry_id 5XZ7 _atom_sites.fract_transf_matrix[1][1] 0.013594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 2 GOL GOL . D 2 GOL A 1 403 3 GOL GOL . E 2 GOL A 1 404 5 GOL GOL . F 2 GOL A 1 405 6 GOL GOL . G 2 GOL A 1 406 7 GOL GOL . H 3 F6P A 1 407 1 F6P F6P . I 4 PEG A 1 408 1 PEG PEG . J 5 HOH A 1 501 252 HOH HOH . J 5 HOH A 2 502 371 HOH HOH . J 5 HOH A 3 503 327 HOH HOH . J 5 HOH A 4 504 338 HOH HOH . J 5 HOH A 5 505 375 HOH HOH . J 5 HOH A 6 506 373 HOH HOH . J 5 HOH A 7 507 215 HOH HOH . J 5 HOH A 8 508 416 HOH HOH . J 5 HOH A 9 509 390 HOH HOH . J 5 HOH A 10 510 410 HOH HOH . J 5 HOH A 11 511 112 HOH HOH . J 5 HOH A 12 512 228 HOH HOH . J 5 HOH A 13 513 137 HOH HOH . J 5 HOH A 14 514 23 HOH HOH . J 5 HOH A 15 515 413 HOH HOH . J 5 HOH A 16 516 73 HOH HOH . J 5 HOH A 17 517 387 HOH HOH . J 5 HOH A 18 518 12 HOH HOH . J 5 HOH A 19 519 335 HOH HOH . J 5 HOH A 20 520 13 HOH HOH . J 5 HOH A 21 521 91 HOH HOH . J 5 HOH A 22 522 402 HOH HOH . J 5 HOH A 23 523 162 HOH HOH . J 5 HOH A 24 524 57 HOH HOH . J 5 HOH A 25 525 374 HOH HOH . J 5 HOH A 26 526 221 HOH HOH . J 5 HOH A 27 527 160 HOH HOH . J 5 HOH A 28 528 301 HOH HOH . J 5 HOH A 29 529 72 HOH HOH . J 5 HOH A 30 530 408 HOH HOH . J 5 HOH A 31 531 414 HOH HOH . J 5 HOH A 32 532 101 HOH HOH . J 5 HOH A 33 533 406 HOH HOH . J 5 HOH A 34 534 256 HOH HOH . J 5 HOH A 35 535 279 HOH HOH . J 5 HOH A 36 536 382 HOH HOH . J 5 HOH A 37 537 307 HOH HOH . J 5 HOH A 38 538 15 HOH HOH . J 5 HOH A 39 539 233 HOH HOH . J 5 HOH A 40 540 411 HOH HOH . J 5 HOH A 41 541 154 HOH HOH . J 5 HOH A 42 542 220 HOH HOH . J 5 HOH A 43 543 271 HOH HOH . J 5 HOH A 44 544 121 HOH HOH . J 5 HOH A 45 545 409 HOH HOH . J 5 HOH A 46 546 66 HOH HOH . J 5 HOH A 47 547 34 HOH HOH . J 5 HOH A 48 548 48 HOH HOH . J 5 HOH A 49 549 399 HOH HOH . J 5 HOH A 50 550 65 HOH HOH . J 5 HOH A 51 551 5 HOH HOH . J 5 HOH A 52 552 109 HOH HOH . J 5 HOH A 53 553 77 HOH HOH . J 5 HOH A 54 554 126 HOH HOH . J 5 HOH A 55 555 344 HOH HOH . J 5 HOH A 56 556 147 HOH HOH . J 5 HOH A 57 557 268 HOH HOH . J 5 HOH A 58 558 342 HOH HOH . J 5 HOH A 59 559 85 HOH HOH . J 5 HOH A 60 560 123 HOH HOH . J 5 HOH A 61 561 92 HOH HOH . J 5 HOH A 62 562 232 HOH HOH . J 5 HOH A 63 563 267 HOH HOH . J 5 HOH A 64 564 270 HOH HOH . J 5 HOH A 65 565 6 HOH HOH . J 5 HOH A 66 566 4 HOH HOH . J 5 HOH A 67 567 245 HOH HOH . J 5 HOH A 68 568 82 HOH HOH . J 5 HOH A 69 569 282 HOH HOH . J 5 HOH A 70 570 129 HOH HOH . J 5 HOH A 71 571 257 HOH HOH . J 5 HOH A 72 572 276 HOH HOH . J 5 HOH A 73 573 30 HOH HOH . J 5 HOH A 74 574 26 HOH HOH . J 5 HOH A 75 575 246 HOH HOH . J 5 HOH A 76 576 120 HOH HOH . J 5 HOH A 77 577 405 HOH HOH . J 5 HOH A 78 578 330 HOH HOH . J 5 HOH A 79 579 76 HOH HOH . J 5 HOH A 80 580 50 HOH HOH . J 5 HOH A 81 581 2 HOH HOH . J 5 HOH A 82 582 396 HOH HOH . J 5 HOH A 83 583 332 HOH HOH . J 5 HOH A 84 584 250 HOH HOH . J 5 HOH A 85 585 74 HOH HOH . J 5 HOH A 86 586 24 HOH HOH . J 5 HOH A 87 587 51 HOH HOH . J 5 HOH A 88 588 100 HOH HOH . J 5 HOH A 89 589 25 HOH HOH . J 5 HOH A 90 590 96 HOH HOH . J 5 HOH A 91 591 54 HOH HOH . J 5 HOH A 92 592 95 HOH HOH . J 5 HOH A 93 593 254 HOH HOH . J 5 HOH A 94 594 328 HOH HOH . J 5 HOH A 95 595 217 HOH HOH . J 5 HOH A 96 596 180 HOH HOH . J 5 HOH A 97 597 258 HOH HOH . J 5 HOH A 98 598 62 HOH HOH . J 5 HOH A 99 599 105 HOH HOH . J 5 HOH A 100 600 263 HOH HOH . J 5 HOH A 101 601 53 HOH HOH . J 5 HOH A 102 602 71 HOH HOH . J 5 HOH A 103 603 70 HOH HOH . J 5 HOH A 104 604 40 HOH HOH . J 5 HOH A 105 605 39 HOH HOH . J 5 HOH A 106 606 67 HOH HOH . J 5 HOH A 107 607 145 HOH HOH . J 5 HOH A 108 608 75 HOH HOH . J 5 HOH A 109 609 393 HOH HOH . J 5 HOH A 110 610 56 HOH HOH . J 5 HOH A 111 611 291 HOH HOH . J 5 HOH A 112 612 163 HOH HOH . J 5 HOH A 113 613 370 HOH HOH . J 5 HOH A 114 614 244 HOH HOH . J 5 HOH A 115 615 269 HOH HOH . J 5 HOH A 116 616 93 HOH HOH . J 5 HOH A 117 617 3 HOH HOH . J 5 HOH A 118 618 170 HOH HOH . J 5 HOH A 119 619 88 HOH HOH . J 5 HOH A 120 620 266 HOH HOH . J 5 HOH A 121 621 240 HOH HOH . J 5 HOH A 122 622 87 HOH HOH . J 5 HOH A 123 623 32 HOH HOH . J 5 HOH A 124 624 336 HOH HOH . J 5 HOH A 125 625 272 HOH HOH . J 5 HOH A 126 626 42 HOH HOH . J 5 HOH A 127 627 41 HOH HOH . J 5 HOH A 128 628 21 HOH HOH . J 5 HOH A 129 629 44 HOH HOH . J 5 HOH A 130 630 283 HOH HOH . J 5 HOH A 131 631 400 HOH HOH . J 5 HOH A 132 632 132 HOH HOH . J 5 HOH A 133 633 28 HOH HOH . J 5 HOH A 134 634 18 HOH HOH . J 5 HOH A 135 635 231 HOH HOH . J 5 HOH A 136 636 274 HOH HOH . J 5 HOH A 137 637 389 HOH HOH . J 5 HOH A 138 638 139 HOH HOH . J 5 HOH A 139 639 136 HOH HOH . J 5 HOH A 140 640 33 HOH HOH . J 5 HOH A 141 641 22 HOH HOH . J 5 HOH A 142 642 55 HOH HOH . J 5 HOH A 143 643 83 HOH HOH . J 5 HOH A 144 644 16 HOH HOH . J 5 HOH A 145 645 19 HOH HOH . J 5 HOH A 146 646 138 HOH HOH . J 5 HOH A 147 647 17 HOH HOH . J 5 HOH A 148 648 175 HOH HOH . J 5 HOH A 149 649 386 HOH HOH . J 5 HOH A 150 650 81 HOH HOH . J 5 HOH A 151 651 383 HOH HOH . J 5 HOH A 152 652 37 HOH HOH . J 5 HOH A 153 653 235 HOH HOH . J 5 HOH A 154 654 113 HOH HOH . J 5 HOH A 155 655 115 HOH HOH . J 5 HOH A 156 656 114 HOH HOH . J 5 HOH A 157 657 167 HOH HOH . J 5 HOH A 158 658 277 HOH HOH . J 5 HOH A 159 659 388 HOH HOH . J 5 HOH A 160 660 153 HOH HOH . J 5 HOH A 161 661 99 HOH HOH . J 5 HOH A 162 662 223 HOH HOH . J 5 HOH A 163 663 152 HOH HOH . J 5 HOH A 164 664 8 HOH HOH . J 5 HOH A 165 665 94 HOH HOH . J 5 HOH A 166 666 134 HOH HOH . J 5 HOH A 167 667 398 HOH HOH . J 5 HOH A 168 668 36 HOH HOH . J 5 HOH A 169 669 259 HOH HOH . J 5 HOH A 170 670 43 HOH HOH . J 5 HOH A 171 671 10 HOH HOH . J 5 HOH A 172 672 80 HOH HOH . J 5 HOH A 173 673 218 HOH HOH . J 5 HOH A 174 674 35 HOH HOH . J 5 HOH A 175 675 14 HOH HOH . J 5 HOH A 176 676 306 HOH HOH . J 5 HOH A 177 677 401 HOH HOH . J 5 HOH A 178 678 98 HOH HOH . J 5 HOH A 179 679 253 HOH HOH . J 5 HOH A 180 680 69 HOH HOH . J 5 HOH A 181 681 144 HOH HOH . J 5 HOH A 182 682 243 HOH HOH . J 5 HOH A 183 683 117 HOH HOH . J 5 HOH A 184 684 331 HOH HOH . J 5 HOH A 185 685 391 HOH HOH . J 5 HOH A 186 686 376 HOH HOH . J 5 HOH A 187 687 226 HOH HOH . J 5 HOH A 188 688 415 HOH HOH . J 5 HOH A 189 689 379 HOH HOH . J 5 HOH A 190 690 227 HOH HOH . J 5 HOH A 191 691 47 HOH HOH . J 5 HOH A 192 692 102 HOH HOH . J 5 HOH A 193 693 49 HOH HOH . J 5 HOH A 194 694 229 HOH HOH . J 5 HOH A 195 695 380 HOH HOH . J 5 HOH A 196 696 161 HOH HOH . J 5 HOH A 197 697 238 HOH HOH . J 5 HOH A 198 698 64 HOH HOH . J 5 HOH A 199 699 169 HOH HOH . J 5 HOH A 200 700 339 HOH HOH . J 5 HOH A 201 701 59 HOH HOH . J 5 HOH A 202 702 127 HOH HOH . J 5 HOH A 203 703 106 HOH HOH . J 5 HOH A 204 704 334 HOH HOH . J 5 HOH A 205 705 275 HOH HOH . J 5 HOH A 206 706 236 HOH HOH . J 5 HOH A 207 707 417 HOH HOH . J 5 HOH A 208 708 172 HOH HOH . J 5 HOH A 209 709 372 HOH HOH . J 5 HOH A 210 710 122 HOH HOH . J 5 HOH A 211 711 333 HOH HOH . J 5 HOH A 212 712 171 HOH HOH . J 5 HOH A 213 713 381 HOH HOH . J 5 HOH A 214 714 264 HOH HOH . J 5 HOH A 215 715 118 HOH HOH . J 5 HOH A 216 716 159 HOH HOH . J 5 HOH A 217 717 392 HOH HOH . J 5 HOH A 218 718 288 HOH HOH . J 5 HOH A 219 719 242 HOH HOH . J 5 HOH A 220 720 58 HOH HOH . J 5 HOH A 221 721 157 HOH HOH . J 5 HOH A 222 722 140 HOH HOH . J 5 HOH A 223 724 130 HOH HOH . J 5 HOH A 224 725 103 HOH HOH . J 5 HOH A 225 726 385 HOH HOH . J 5 HOH A 226 727 262 HOH HOH . J 5 HOH A 227 728 11 HOH HOH . J 5 HOH A 228 729 61 HOH HOH . J 5 HOH A 229 730 29 HOH HOH . J 5 HOH A 230 731 378 HOH HOH . J 5 HOH A 231 732 341 HOH HOH . J 5 HOH A 232 733 395 HOH HOH . J 5 HOH A 233 734 397 HOH HOH . J 5 HOH A 234 735 343 HOH HOH . J 5 HOH A 235 736 403 HOH HOH . J 5 HOH A 236 737 284 HOH HOH . J 5 HOH A 237 738 27 HOH HOH . J 5 HOH A 238 739 324 HOH HOH . J 5 HOH A 239 740 89 HOH HOH . J 5 HOH A 240 741 216 HOH HOH . J 5 HOH A 241 742 9 HOH HOH . J 5 HOH A 242 743 20 HOH HOH . J 5 HOH A 243 744 394 HOH HOH . J 5 HOH A 244 745 110 HOH HOH . J 5 HOH A 245 746 165 HOH HOH . J 5 HOH A 246 747 368 HOH HOH . J 5 HOH A 247 748 148 HOH HOH . J 5 HOH A 248 749 420 HOH HOH . J 5 HOH A 249 750 177 HOH HOH . J 5 HOH A 250 751 45 HOH HOH . J 5 HOH A 251 752 116 HOH HOH . J 5 HOH A 252 753 412 HOH HOH . J 5 HOH A 253 754 265 HOH HOH . J 5 HOH A 254 755 418 HOH HOH . J 5 HOH A 255 756 133 HOH HOH . J 5 HOH A 256 757 38 HOH HOH . J 5 HOH A 257 758 320 HOH HOH . J 5 HOH A 258 759 365 HOH HOH . J 5 HOH A 259 760 79 HOH HOH . J 5 HOH A 260 761 369 HOH HOH . J 5 HOH A 261 762 164 HOH HOH . J 5 HOH A 262 763 107 HOH HOH . J 5 HOH A 263 764 178 HOH HOH . J 5 HOH A 264 765 350 HOH HOH . J 5 HOH A 265 766 241 HOH HOH . J 5 HOH A 266 767 329 HOH HOH . J 5 HOH A 267 768 156 HOH HOH . J 5 HOH A 268 769 323 HOH HOH . J 5 HOH A 269 770 367 HOH HOH . J 5 HOH A 270 771 248 HOH HOH . J 5 HOH A 271 772 46 HOH HOH . J 5 HOH A 272 773 168 HOH HOH . J 5 HOH A 273 774 419 HOH HOH . J 5 HOH A 274 775 86 HOH HOH . J 5 HOH A 275 776 141 HOH HOH . J 5 HOH A 276 777 407 HOH HOH . J 5 HOH A 277 778 125 HOH HOH . J 5 HOH A 278 779 366 HOH HOH . J 5 HOH A 279 780 322 HOH HOH . J 5 HOH A 280 781 119 HOH HOH . J 5 HOH A 281 782 146 HOH HOH . J 5 HOH A 282 783 326 HOH HOH . J 5 HOH A 283 784 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 25.635 11.563 5.68 1 27.63 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 2 24.398 10.849 5.731 1 30.7 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 2 26.672 10.618 5.247 1 30.23 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 2 27.888 11.405 5.129 1 30.26 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 2 27.011 9.458 6.192 1 26.67 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 2 28.369 9.819 6.47 1 34.06 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #