data_5XZ9 # _model_server_result.job_id y0BSWFAM2KomRYttjD4tVg _model_server_result.datetime_utc '2024-10-20 01:33:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5XZ9 # _exptl.entry_id 5XZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.82 _cell.angle_gamma 90 _cell.entry_id 5XZ9 _cell.length_a 118.746 _cell.length_b 36.79 _cell.length_c 89.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5XZ9 _atom_sites.fract_transf_matrix[1][1] 0.008421 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005641 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 1 ATP ATP . C 3 GOL A 1 402 1 GOL GOL . D 4 HOH A 1 501 65 HOH HOH . D 4 HOH A 2 502 59 HOH HOH . D 4 HOH A 3 503 75 HOH HOH . D 4 HOH A 4 504 60 HOH HOH . D 4 HOH A 5 505 28 HOH HOH . D 4 HOH A 6 506 71 HOH HOH . D 4 HOH A 7 507 55 HOH HOH . D 4 HOH A 8 508 74 HOH HOH . D 4 HOH A 9 509 61 HOH HOH . D 4 HOH A 10 510 53 HOH HOH . D 4 HOH A 11 511 32 HOH HOH . D 4 HOH A 12 512 45 HOH HOH . D 4 HOH A 13 513 18 HOH HOH . D 4 HOH A 14 514 22 HOH HOH . D 4 HOH A 15 515 7 HOH HOH . D 4 HOH A 16 516 9 HOH HOH . D 4 HOH A 17 517 78 HOH HOH . D 4 HOH A 18 518 36 HOH HOH . D 4 HOH A 19 519 49 HOH HOH . D 4 HOH A 20 520 84 HOH HOH . D 4 HOH A 21 521 69 HOH HOH . D 4 HOH A 22 522 6 HOH HOH . D 4 HOH A 23 523 52 HOH HOH . D 4 HOH A 24 524 82 HOH HOH . D 4 HOH A 25 525 12 HOH HOH . D 4 HOH A 26 526 40 HOH HOH . D 4 HOH A 27 527 17 HOH HOH . D 4 HOH A 28 528 58 HOH HOH . D 4 HOH A 29 529 20 HOH HOH . D 4 HOH A 30 530 21 HOH HOH . D 4 HOH A 31 531 30 HOH HOH . D 4 HOH A 32 532 4 HOH HOH . D 4 HOH A 33 533 34 HOH HOH . D 4 HOH A 34 534 23 HOH HOH . D 4 HOH A 35 535 77 HOH HOH . D 4 HOH A 36 536 48 HOH HOH . D 4 HOH A 37 537 15 HOH HOH . D 4 HOH A 38 538 50 HOH HOH . D 4 HOH A 39 539 67 HOH HOH . D 4 HOH A 40 540 73 HOH HOH . D 4 HOH A 41 541 80 HOH HOH . D 4 HOH A 42 542 57 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 47 HOH HOH . D 4 HOH A 45 545 26 HOH HOH . D 4 HOH A 46 546 2 HOH HOH . D 4 HOH A 47 547 62 HOH HOH . D 4 HOH A 48 548 46 HOH HOH . D 4 HOH A 49 549 66 HOH HOH . D 4 HOH A 50 550 5 HOH HOH . D 4 HOH A 51 551 42 HOH HOH . D 4 HOH A 52 552 16 HOH HOH . D 4 HOH A 53 553 13 HOH HOH . D 4 HOH A 54 554 70 HOH HOH . D 4 HOH A 55 555 39 HOH HOH . D 4 HOH A 56 556 29 HOH HOH . D 4 HOH A 57 557 10 HOH HOH . D 4 HOH A 58 558 31 HOH HOH . D 4 HOH A 59 559 3 HOH HOH . D 4 HOH A 60 560 25 HOH HOH . D 4 HOH A 61 561 72 HOH HOH . D 4 HOH A 62 562 85 HOH HOH . D 4 HOH A 63 563 37 HOH HOH . D 4 HOH A 64 564 1 HOH HOH . D 4 HOH A 65 565 33 HOH HOH . D 4 HOH A 66 566 8 HOH HOH . D 4 HOH A 67 567 68 HOH HOH . D 4 HOH A 68 568 88 HOH HOH . D 4 HOH A 69 569 14 HOH HOH . D 4 HOH A 70 570 19 HOH HOH . D 4 HOH A 71 571 44 HOH HOH . D 4 HOH A 72 572 87 HOH HOH . D 4 HOH A 73 573 76 HOH HOH . D 4 HOH A 74 574 41 HOH HOH . D 4 HOH A 75 575 54 HOH HOH . D 4 HOH A 76 576 35 HOH HOH . D 4 HOH A 77 577 86 HOH HOH . D 4 HOH A 78 578 24 HOH HOH . D 4 HOH A 79 579 38 HOH HOH . D 4 HOH A 80 580 63 HOH HOH . D 4 HOH A 81 581 64 HOH HOH . D 4 HOH A 82 582 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 18.527 -19.499 11.538 1 70.56 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . B 2 19.833 -18.781 11.216 1 63.94 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . B 2 18.659 -20.984 11.342 1 67.3 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . B 2 17.33 -18.921 10.804 1 77.66 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . B 2 17.212 -18.273 13.967 1 43.73 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . B 2 16.458 -17.351 12.976 1 49.62 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . B 2 16.37 -18.948 15.003 1 36.24 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . B 2 18.168 -19.381 13.171 1 53.97 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . B 2 19.706 -17.52 15.39 1 39.12 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . B 2 20.308 -16.137 15.352 1 41.16 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . B 2 20.447 -18.68 14.767 1 43.74 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . B 2 18.157 -17.321 14.889 1 44.13 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . B 2 19.527 -17.906 16.929 1 43.49 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . B 2 18.524 -17.418 17.816 1 40.01 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . B 2 19.032 -17.815 19.208 1 38.95 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . B 2 18.953 -19.236 19.29 1 34.78 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . B 2 20.513 -17.566 19.522 1 37.07 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . B 2 20.926 -16.258 19.814 1 38.25 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . B 2 20.719 -18.492 20.702 1 38.71 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . B 2 20.228 -17.999 21.949 1 33.6 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . B 2 19.906 -19.688 20.266 1 37.67 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . B 2 20.733 -20.718 19.601 1 39.46 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . B 2 21.146 -20.757 18.291 1 38.87 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . B 2 21.865 -21.91 18.058 1 42.05 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . B 2 21.935 -22.585 19.247 1 42.85 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . B 2 22.533 -23.842 19.769 1 43.03 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . B 2 23.219 -24.629 18.937 1 49.06 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . B 2 22.354 -24.192 21.079 1 44.9 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . B 2 21.649 -23.403 21.922 1 43.69 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . B 2 21.104 -22.228 21.51 1 38.99 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . B 2 21.183 -21.794 20.245 1 37.86 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #