data_5XZ9 # _model_server_result.job_id 7-mOolq6ThSCz-3VvsiC_Q _model_server_result.datetime_utc '2024-12-03 04:11:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5XZ9 # _exptl.entry_id 5XZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.82 _cell.angle_gamma 90 _cell.entry_id 5XZ9 _cell.length_a 118.746 _cell.length_b 36.79 _cell.length_c 89.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 178 n n C1 C2 GOL sing 179 n n C1 H11 GOL sing 180 n n C1 H12 GOL sing 181 n n O1 HO1 GOL sing 182 n n C2 O2 GOL sing 183 n n C2 C3 GOL sing 184 n n C2 H2 GOL sing 185 n n O2 HO2 GOL sing 186 n n C3 O3 GOL sing 187 n n C3 H31 GOL sing 188 n n C3 H32 GOL sing 189 n n O3 HO3 GOL sing 190 n n # _atom_sites.entry_id 5XZ9 _atom_sites.fract_transf_matrix[1][1] 0.008421 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005641 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 1 ATP ATP . C 3 GOL A 1 402 1 GOL GOL . D 4 HOH A 1 501 65 HOH HOH . D 4 HOH A 2 502 59 HOH HOH . D 4 HOH A 3 503 75 HOH HOH . D 4 HOH A 4 504 60 HOH HOH . D 4 HOH A 5 505 28 HOH HOH . D 4 HOH A 6 506 71 HOH HOH . D 4 HOH A 7 507 55 HOH HOH . D 4 HOH A 8 508 74 HOH HOH . D 4 HOH A 9 509 61 HOH HOH . D 4 HOH A 10 510 53 HOH HOH . D 4 HOH A 11 511 32 HOH HOH . D 4 HOH A 12 512 45 HOH HOH . D 4 HOH A 13 513 18 HOH HOH . D 4 HOH A 14 514 22 HOH HOH . D 4 HOH A 15 515 7 HOH HOH . D 4 HOH A 16 516 9 HOH HOH . D 4 HOH A 17 517 78 HOH HOH . D 4 HOH A 18 518 36 HOH HOH . D 4 HOH A 19 519 49 HOH HOH . D 4 HOH A 20 520 84 HOH HOH . D 4 HOH A 21 521 69 HOH HOH . D 4 HOH A 22 522 6 HOH HOH . D 4 HOH A 23 523 52 HOH HOH . D 4 HOH A 24 524 82 HOH HOH . D 4 HOH A 25 525 12 HOH HOH . D 4 HOH A 26 526 40 HOH HOH . D 4 HOH A 27 527 17 HOH HOH . D 4 HOH A 28 528 58 HOH HOH . D 4 HOH A 29 529 20 HOH HOH . D 4 HOH A 30 530 21 HOH HOH . D 4 HOH A 31 531 30 HOH HOH . D 4 HOH A 32 532 4 HOH HOH . D 4 HOH A 33 533 34 HOH HOH . D 4 HOH A 34 534 23 HOH HOH . D 4 HOH A 35 535 77 HOH HOH . D 4 HOH A 36 536 48 HOH HOH . D 4 HOH A 37 537 15 HOH HOH . D 4 HOH A 38 538 50 HOH HOH . D 4 HOH A 39 539 67 HOH HOH . D 4 HOH A 40 540 73 HOH HOH . D 4 HOH A 41 541 80 HOH HOH . D 4 HOH A 42 542 57 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 47 HOH HOH . D 4 HOH A 45 545 26 HOH HOH . D 4 HOH A 46 546 2 HOH HOH . D 4 HOH A 47 547 62 HOH HOH . D 4 HOH A 48 548 46 HOH HOH . D 4 HOH A 49 549 66 HOH HOH . D 4 HOH A 50 550 5 HOH HOH . D 4 HOH A 51 551 42 HOH HOH . D 4 HOH A 52 552 16 HOH HOH . D 4 HOH A 53 553 13 HOH HOH . D 4 HOH A 54 554 70 HOH HOH . D 4 HOH A 55 555 39 HOH HOH . D 4 HOH A 56 556 29 HOH HOH . D 4 HOH A 57 557 10 HOH HOH . D 4 HOH A 58 558 31 HOH HOH . D 4 HOH A 59 559 3 HOH HOH . D 4 HOH A 60 560 25 HOH HOH . D 4 HOH A 61 561 72 HOH HOH . D 4 HOH A 62 562 85 HOH HOH . D 4 HOH A 63 563 37 HOH HOH . D 4 HOH A 64 564 1 HOH HOH . D 4 HOH A 65 565 33 HOH HOH . D 4 HOH A 66 566 8 HOH HOH . D 4 HOH A 67 567 68 HOH HOH . D 4 HOH A 68 568 88 HOH HOH . D 4 HOH A 69 569 14 HOH HOH . D 4 HOH A 70 570 19 HOH HOH . D 4 HOH A 71 571 44 HOH HOH . D 4 HOH A 72 572 87 HOH HOH . D 4 HOH A 73 573 76 HOH HOH . D 4 HOH A 74 574 41 HOH HOH . D 4 HOH A 75 575 54 HOH HOH . D 4 HOH A 76 576 35 HOH HOH . D 4 HOH A 77 577 86 HOH HOH . D 4 HOH A 78 578 24 HOH HOH . D 4 HOH A 79 579 38 HOH HOH . D 4 HOH A 80 580 63 HOH HOH . D 4 HOH A 81 581 64 HOH HOH . D 4 HOH A 82 582 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -8.101 -7.983 18.959 1 32.2 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 -8.364 -8.612 20.235 1 34.83 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 -7.424 -9.097 18.217 1 29.59 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 -6.683 -9.86 19.192 1 32.65 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 -6.469 -8.574 17.156 1 31.09 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 -5.105 -8.991 17.255 1 23.71 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #