data_5XZF # _model_server_result.job_id QPncgT9P4w9tyGWOh6S9FQ _model_server_result.datetime_utc '2024-10-19 09:39:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xzf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5XZF # _exptl.entry_id 5XZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 518.77 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,6S)-6-(1-adamantyl)-6-oxidanyl-hex-4-yn-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.42 _cell.angle_gamma 90 _cell.entry_id 5XZF _cell.length_a 154.07 _cell.length_b 41.11 _cell.length_c 41.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H50 O3' _chem_comp.formula_weight 518.77 _chem_comp.id 8J0 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,6S)-6-(1-adamantyl)-6-oxidanyl-hex-4-yn-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C03 8J0 sing 1 n n C02 C01 8J0 sing 2 n n O02 C03 8J0 sing 3 n n C03 C04 8J0 sing 4 n n C01 O01 8J0 sing 5 n n C01 C10 8J0 sing 6 n n C04 C39 8J0 doub 7 n n C04 C05 8J0 sing 8 n n C10 C05 8J0 sing 9 n n C05 C06 8J0 doub 10 z n C06 C07 8J0 sing 11 n n C07 C08 8J0 doub 12 e n C08 C09 8J0 sing 13 n n C08 C14 8J0 sing 14 n n C18 C13 8J0 sing 15 n n C15 C14 8J0 sing 16 n n C15 C16 8J0 sing 17 n n C09 C11 8J0 sing 18 n n C14 C13 8J0 sing 19 n n C11 C12 8J0 sing 20 n n C38 C33 8J0 sing 21 n n C38 C35 8J0 sing 22 n n C13 C12 8J0 sing 23 n n C13 C17 8J0 sing 24 n n C33 C34 8J0 sing 25 n n C33 C32 8J0 sing 26 n n C16 C17 8J0 sing 27 n n C34 C29 8J0 sing 28 n n C17 C20 8J0 sing 29 n n C35 C37 8J0 sing 30 n n C35 C36 8J0 sing 31 n n C20 C22 8J0 sing 32 n n C20 C21 8J0 sing 33 n n C37 C29 8J0 sing 34 n n C32 C31 8J0 sing 35 n n C29 C25 8J0 sing 36 n n C29 C30 8J0 sing 37 n n C25 C24 8J0 sing 38 n n C25 O03 8J0 sing 39 n n C24 C23 8J0 trip 40 n n C23 C22 8J0 sing 41 n n C36 C31 8J0 sing 42 n n C31 C30 8J0 sing 43 n n C10 H1 8J0 sing 44 n n C10 H2 8J0 sing 45 n n O02 H3 8J0 sing 46 n n C03 H4 8J0 sing 47 n n C39 H5 8J0 sing 48 n n C39 H6 8J0 sing 49 n n C02 H7 8J0 sing 50 n n C02 H8 8J0 sing 51 n n C01 H9 8J0 sing 52 n n O01 H10 8J0 sing 53 n n C06 H11 8J0 sing 54 n n C07 H12 8J0 sing 55 n n C09 H13 8J0 sing 56 n n C09 H14 8J0 sing 57 n n C11 H15 8J0 sing 58 n n C11 H16 8J0 sing 59 n n C12 H17 8J0 sing 60 n n C12 H18 8J0 sing 61 n n C18 H19 8J0 sing 62 n n C18 H20 8J0 sing 63 n n C18 H21 8J0 sing 64 n n C14 H22 8J0 sing 65 n n C15 H23 8J0 sing 66 n n C15 H24 8J0 sing 67 n n C16 H25 8J0 sing 68 n n C16 H26 8J0 sing 69 n n C17 H27 8J0 sing 70 n n C20 H28 8J0 sing 71 n n C21 H29 8J0 sing 72 n n C21 H30 8J0 sing 73 n n C21 H31 8J0 sing 74 n n C22 H32 8J0 sing 75 n n C22 H33 8J0 sing 76 n n C25 H34 8J0 sing 77 n n O03 H35 8J0 sing 78 n n C34 H36 8J0 sing 79 n n C34 H37 8J0 sing 80 n n C37 H38 8J0 sing 81 n n C37 H39 8J0 sing 82 n n C35 H40 8J0 sing 83 n n C38 H41 8J0 sing 84 n n C38 H42 8J0 sing 85 n n C33 H43 8J0 sing 86 n n C32 H44 8J0 sing 87 n n C32 H45 8J0 sing 88 n n C36 H46 8J0 sing 89 n n C36 H47 8J0 sing 90 n n C31 H48 8J0 sing 91 n n C30 H49 8J0 sing 92 n n C30 H50 8J0 sing 93 n n # _atom_sites.entry_id 5XZF _atom_sites.fract_transf_matrix[1][1] 0.006491 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000731 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8J0 A 1 501 1 8J0 RC1 . D 4 FMT A 1 502 1 FMT FMT . E 5 HOH A 1 601 21 HOH HOH . E 5 HOH A 2 602 10 HOH HOH . E 5 HOH A 3 603 20 HOH HOH . E 5 HOH A 4 604 3 HOH HOH . E 5 HOH A 5 605 4 HOH HOH . E 5 HOH A 6 606 29 HOH HOH . E 5 HOH A 7 607 2 HOH HOH . E 5 HOH A 8 608 38 HOH HOH . E 5 HOH A 9 609 19 HOH HOH . E 5 HOH A 10 610 1 HOH HOH . E 5 HOH A 11 611 28 HOH HOH . E 5 HOH A 12 612 44 HOH HOH . E 5 HOH A 13 613 30 HOH HOH . E 5 HOH A 14 614 32 HOH HOH . E 5 HOH A 15 615 25 HOH HOH . E 5 HOH A 16 616 12 HOH HOH . E 5 HOH A 17 617 11 HOH HOH . E 5 HOH A 18 618 13 HOH HOH . E 5 HOH A 19 619 36 HOH HOH . E 5 HOH A 20 620 40 HOH HOH . E 5 HOH A 21 621 9 HOH HOH . E 5 HOH A 22 622 6 HOH HOH . E 5 HOH A 23 623 39 HOH HOH . E 5 HOH A 24 624 23 HOH HOH . E 5 HOH A 25 625 26 HOH HOH . E 5 HOH A 26 626 18 HOH HOH . E 5 HOH A 27 627 49 HOH HOH . E 5 HOH A 28 628 16 HOH HOH . E 5 HOH A 29 629 50 HOH HOH . E 5 HOH A 30 630 46 HOH HOH . E 5 HOH A 31 631 15 HOH HOH . E 5 HOH A 32 632 27 HOH HOH . E 5 HOH A 33 633 37 HOH HOH . E 5 HOH A 34 634 33 HOH HOH . E 5 HOH A 35 635 8 HOH HOH . E 5 HOH A 36 636 14 HOH HOH . E 5 HOH A 37 637 24 HOH HOH . E 5 HOH A 38 638 35 HOH HOH . E 5 HOH A 39 639 48 HOH HOH . E 5 HOH A 40 640 7 HOH HOH . E 5 HOH A 41 641 17 HOH HOH . E 5 HOH A 42 642 34 HOH HOH . E 5 HOH A 43 643 41 HOH HOH . E 5 HOH A 44 644 51 HOH HOH . E 5 HOH A 45 645 45 HOH HOH . E 5 HOH A 46 646 22 HOH HOH . E 5 HOH A 47 647 42 HOH HOH . E 5 HOH A 48 648 43 HOH HOH . E 5 HOH A 49 649 5 HOH HOH . E 5 HOH A 50 650 31 HOH HOH . F 5 HOH C 1 701 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 8J0 . . . C 3 14.071 9.434 19.94 1 34.53 ? C10 8J0 501 A 1 HETATM 2 O O02 8J0 . . . C 3 14.409 5.672 17.98 1 33.77 ? O02 8J0 501 A 1 HETATM 3 C C03 8J0 . . . C 3 14.85 6.873 18.577 1 34.43 ? C03 8J0 501 A 1 HETATM 4 C C04 8J0 . . . C 3 14.251 6.954 19.92 1 35.1 ? C04 8J0 501 A 1 HETATM 5 C C39 8J0 . . . C 3 13.446 5.999 20.366 1 40.64 ? C39 8J0 501 A 1 HETATM 6 C C02 8J0 . . . C 3 14.389 8.115 17.845 1 31.8 ? C02 8J0 501 A 1 HETATM 7 C C01 8J0 . . . C 3 14.853 9.364 18.627 1 34.55 ? C01 8J0 501 A 1 HETATM 8 O O01 8J0 . . . C 3 16.303 9.345 18.788 1 33.7 ? O01 8J0 501 A 1 HETATM 9 C C05 8J0 . . . C 3 14.315 8.175 20.697 1 32.85 ? C05 8J0 501 A 1 HETATM 10 C C06 8J0 . . . C 3 14.531 8.259 22.028 1 31.78 ? C06 8J0 501 A 1 HETATM 11 C C07 8J0 . . . C 3 14.745 7.117 22.95 1 29.13 ? C07 8J0 501 A 1 HETATM 12 C C08 8J0 . . . C 3 14.539 7.206 24.254 1 27.77 ? C08 8J0 501 A 1 HETATM 13 C C09 8J0 . . . C 3 14.066 8.475 24.936 1 30.56 ? C09 8J0 501 A 1 HETATM 14 C C11 8J0 . . . C 3 12.685 8.087 25.507 1 29.07 ? C11 8J0 501 A 1 HETATM 15 C C12 8J0 . . . C 3 12.724 6.808 26.376 1 30.08 ? C12 8J0 501 A 1 HETATM 16 C C13 8J0 . . . C 3 13.334 5.593 25.686 1 30.64 ? C13 8J0 501 A 1 HETATM 17 C C18 8J0 . . . C 3 12.396 5.174 24.56 1 30.94 ? C18 8J0 501 A 1 HETATM 18 C C14 8J0 . . . C 3 14.687 6.042 25.165 1 30.42 ? C14 8J0 501 A 1 HETATM 19 C C15 8J0 . . . C 3 15.434 4.779 24.682 1 28.74 ? C15 8J0 501 A 1 HETATM 20 C C16 8J0 . . . C 3 15.066 3.831 25.787 1 32.52 ? C16 8J0 501 A 1 HETATM 21 C C17 8J0 . . . C 3 13.843 4.386 26.514 1 34.37 ? C17 8J0 501 A 1 HETATM 22 C C20 8J0 . . . C 3 12.827 3.276 26.851 1 35.96 ? C20 8J0 501 A 1 HETATM 23 C C21 8J0 . . . C 3 11.691 3.873 27.671 1 38.16 ? C21 8J0 501 A 1 HETATM 24 C C22 8J0 . . . C 3 13.387 2.047 27.537 1 35.1 ? C22 8J0 501 A 1 HETATM 25 C C23 8J0 . . . C 3 12.64 1.013 27.454 1 41.38 ? C23 8J0 501 A 1 HETATM 26 C C24 8J0 . . . C 3 11.916 0.056 27.34 1 38.62 ? C24 8J0 501 A 1 HETATM 27 C C25 8J0 . . . C 3 10.983 -1.101 27.201 1 40.53 ? C25 8J0 501 A 1 HETATM 28 O O03 8J0 . . . C 3 11.017 -2.094 28.242 1 42.21 ? O03 8J0 501 A 1 HETATM 29 C C29 8J0 . . . C 3 9.534 -0.56 27.102 1 38.86 ? C29 8J0 501 A 1 HETATM 30 C C34 8J0 . . . C 3 9.399 0.402 25.957 1 37.34 ? C34 8J0 501 A 1 HETATM 31 C C37 8J0 . . . C 3 8.6 -1.749 26.877 1 33.22 ? C37 8J0 501 A 1 HETATM 32 C C35 8J0 . . . C 3 7.165 -1.247 26.699 1 37.53 ? C35 8J0 501 A 1 HETATM 33 C C38 8J0 . . . C 3 7.048 -0.283 25.526 1 38.02 ? C38 8J0 501 A 1 HETATM 34 C C33 8J0 . . . C 3 7.979 0.892 25.709 1 36.57 ? C33 8J0 501 A 1 HETATM 35 C C32 8J0 . . . C 3 7.477 1.639 26.903 1 37.91 ? C32 8J0 501 A 1 HETATM 36 C C36 8J0 . . . C 3 6.685 -0.519 27.924 1 35.07 ? C36 8J0 501 A 1 HETATM 37 C C31 8J0 . . . C 3 7.62 0.69 28.107 1 39.35 ? C31 8J0 501 A 1 HETATM 38 C C30 8J0 . . . C 3 9.083 0.27 28.302 1 36.46 ? C30 8J0 501 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #