data_5XZH # _model_server_result.job_id 89myY9D6TcO8DGlbIsk-NQ _model_server_result.datetime_utc '2025-01-26 16:32:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5XZH # _exptl.entry_id 5XZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 518.77 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,6R)-6-(1-adamantyl)-6-oxidanyl-hex-4-yn-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.58 _cell.angle_gamma 90 _cell.entry_id 5XZH _cell.length_a 153.665 _cell.length_b 41.763 _cell.length_c 42.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H50 O3' _chem_comp.formula_weight 518.77 _chem_comp.id 8J3 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,6R)-6-(1-adamantyl)-6-oxidanyl-hex-4-yn-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O02 C03 8J3 sing 1 n n C02 C03 8J3 sing 2 n n C02 C01 8J3 sing 3 n n C03 C04 8J3 sing 4 n n C01 O01 8J3 sing 5 n n C01 C10 8J3 sing 6 n n C04 C39 8J3 doub 7 n n C04 C05 8J3 sing 8 n n C10 C05 8J3 sing 9 n n C05 C06 8J3 doub 10 z n C06 C07 8J3 sing 11 n n C07 C08 8J3 doub 12 e n C08 C09 8J3 sing 13 n n C08 C14 8J3 sing 14 n n C18 C13 8J3 sing 15 n n C15 C14 8J3 sing 16 n n C15 C16 8J3 sing 17 n n C09 C11 8J3 sing 18 n n C14 C13 8J3 sing 19 n n C38 C33 8J3 sing 20 n n C38 C35 8J3 sing 21 n n C16 C17 8J3 sing 22 n n C11 C12 8J3 sing 23 n n C13 C17 8J3 sing 24 n n C13 C12 8J3 sing 25 n n C33 C34 8J3 sing 26 n n C33 C32 8J3 sing 27 n n C34 C29 8J3 sing 28 n n C17 C20 8J3 sing 29 n n O03 C25 8J3 sing 30 n n C35 C37 8J3 sing 31 n n C35 C36 8J3 sing 32 n n C20 C22 8J3 sing 33 n n C20 C21 8J3 sing 34 n n C37 C29 8J3 sing 35 n n C32 C31 8J3 sing 36 n n C29 C25 8J3 sing 37 n n C29 C30 8J3 sing 38 n n C22 C23 8J3 sing 39 n n C23 C24 8J3 trip 40 n n C24 C25 8J3 sing 41 n n C36 C31 8J3 sing 42 n n C31 C30 8J3 sing 43 n n C01 H1 8J3 sing 44 n n O01 H2 8J3 sing 45 n n C02 H3 8J3 sing 46 n n C02 H4 8J3 sing 47 n n C03 H5 8J3 sing 48 n n C06 H6 8J3 sing 49 n n C07 H7 8J3 sing 50 n n C09 H8 8J3 sing 51 n n C09 H9 8J3 sing 52 n n C10 H10 8J3 sing 53 n n C10 H11 8J3 sing 54 n n C11 H12 8J3 sing 55 n n C11 H13 8J3 sing 56 n n C12 H14 8J3 sing 57 n n C12 H15 8J3 sing 58 n n C14 H16 8J3 sing 59 n n C15 H17 8J3 sing 60 n n C15 H18 8J3 sing 61 n n C16 H19 8J3 sing 62 n n C16 H20 8J3 sing 63 n n O02 H21 8J3 sing 64 n n C39 H22 8J3 sing 65 n n C39 H23 8J3 sing 66 n n C18 H24 8J3 sing 67 n n C18 H25 8J3 sing 68 n n C18 H26 8J3 sing 69 n n C17 H27 8J3 sing 70 n n C20 H28 8J3 sing 71 n n C21 H29 8J3 sing 72 n n C21 H30 8J3 sing 73 n n C21 H31 8J3 sing 74 n n C22 H32 8J3 sing 75 n n C22 H33 8J3 sing 76 n n C25 H34 8J3 sing 77 n n O03 H35 8J3 sing 78 n n C34 H36 8J3 sing 79 n n C34 H37 8J3 sing 80 n n C37 H38 8J3 sing 81 n n C37 H39 8J3 sing 82 n n C35 H40 8J3 sing 83 n n C38 H41 8J3 sing 84 n n C38 H42 8J3 sing 85 n n C33 H43 8J3 sing 86 n n C32 H44 8J3 sing 87 n n C32 H45 8J3 sing 88 n n C36 H46 8J3 sing 89 n n C36 H47 8J3 sing 90 n n C31 H48 8J3 sing 91 n n C30 H49 8J3 sing 92 n n C30 H50 8J3 sing 93 n n # _atom_sites.entry_id 5XZH _atom_sites.fract_transf_matrix[1][1] 0.006508 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000636 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8J3 A 1 501 1 8J3 RC2 . D 4 HOH A 1 601 7 HOH HOH . D 4 HOH A 2 602 12 HOH HOH . D 4 HOH A 3 603 5 HOH HOH . D 4 HOH A 4 604 8 HOH HOH . D 4 HOH A 5 605 3 HOH HOH . D 4 HOH A 6 606 11 HOH HOH . D 4 HOH A 7 607 4 HOH HOH . D 4 HOH A 8 608 10 HOH HOH . D 4 HOH A 9 609 1 HOH HOH . D 4 HOH A 10 610 9 HOH HOH . D 4 HOH A 11 611 6 HOH HOH . D 4 HOH A 12 612 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 8J3 . . . C 3 10.975 3.504 61.06 1 39.69 ? C01 8J3 501 A 1 HETATM 2 O O01 8J3 . . . C 3 12.409 3.558 61.061 1 39.83 ? O01 8J3 501 A 1 HETATM 3 C C02 8J3 . . . C 3 10.509 2.289 60.292 1 41.94 ? C02 8J3 501 A 1 HETATM 4 C C03 8J3 . . . C 3 11.082 1.005 60.913 1 43.32 ? C03 8J3 501 A 1 HETATM 5 C C04 8J3 . . . C 3 10.509 0.97 62.252 1 40.77 ? C04 8J3 501 A 1 HETATM 6 C C05 8J3 . . . C 3 10.593 2.147 63.115 1 44.34 ? C05 8J3 501 A 1 HETATM 7 C C06 8J3 . . . C 3 10.811 2.208 64.442 1 43.65 ? C06 8J3 501 A 1 HETATM 8 C C07 8J3 . . . C 3 11.026 1.027 65.274 1 41.24 ? C07 8J3 501 A 1 HETATM 9 C C08 8J3 . . . C 3 10.946 1.045 66.608 1 39.11 ? C08 8J3 501 A 1 HETATM 10 C C09 8J3 . . . C 3 10.62 2.229 67.455 1 44.36 ? C09 8J3 501 A 1 HETATM 11 C C10 8J3 . . . C 3 10.348 3.454 62.455 1 41.65 ? C10 8J3 501 A 1 HETATM 12 C C11 8J3 . . . C 3 9.192 1.96 67.971 1 40.24 ? C11 8J3 501 A 1 HETATM 13 C C12 8J3 . . . C 3 9.171 0.646 68.763 1 41.92 ? C12 8J3 501 A 1 HETATM 14 C C13 8J3 . . . C 3 9.72 -0.544 67.976 1 39.99 ? C13 8J3 501 A 1 HETATM 15 C C14 8J3 . . . C 3 11.078 -0.162 67.463 1 39.31 ? C14 8J3 501 A 1 HETATM 16 C C15 8J3 . . . C 3 11.719 -1.429 66.908 1 41.37 ? C15 8J3 501 A 1 HETATM 17 C C16 8J3 . . . C 3 11.282 -2.447 67.925 1 42.29 ? C16 8J3 501 A 1 HETATM 18 O O02 8J3 . . . C 3 10.657 -0.128 60.159 1 46.02 ? O02 8J3 501 A 1 HETATM 19 C C39 8J3 . . . C 3 9.739 -0.027 62.589 1 43.7 ? C39 8J3 501 A 1 HETATM 20 C C18 8J3 . . . C 3 8.719 -0.897 66.839 1 39.5 ? C18 8J3 501 A 1 HETATM 21 C C17 8J3 . . . C 3 10.176 -1.769 68.751 1 44.9 ? C17 8J3 501 A 1 HETATM 22 C C20 8J3 . . . C 3 9.062 -2.743 69.097 1 52.01 ? C20 8J3 501 A 1 HETATM 23 C C21 8J3 . . . C 3 8 -2.101 70.009 1 58.08 ? C21 8J3 501 A 1 HETATM 24 C C22 8J3 . . . C 3 9.583 -3.98 69.744 1 52.95 ? C22 8J3 501 A 1 HETATM 25 C C23 8J3 . . . C 3 8.727 -4.909 69.784 1 65.06 ? C23 8J3 501 A 1 HETATM 26 C C24 8J3 . . . C 3 7.894 -5.747 69.836 1 63.41 ? C24 8J3 501 A 1 HETATM 27 C C25 8J3 . . . C 3 6.845 -6.776 69.87 1 64.6 ? C25 8J3 501 A 1 HETATM 28 O O03 8J3 . . . C 3 7.078 -7.621 68.761 1 72.86 ? O03 8J3 501 A 1 HETATM 29 C C29 8J3 . . . C 3 5.477 -6.185 69.613 1 59.85 ? C29 8J3 501 A 1 HETATM 30 C C34 8J3 . . . C 3 5.45 -5.257 68.402 1 56.2 ? C34 8J3 501 A 1 HETATM 31 C C37 8J3 . . . C 3 4.513 -7.334 69.358 1 63.18 ? C37 8J3 501 A 1 HETATM 32 C C35 8J3 . . . C 3 3.114 -6.787 69.081 1 59.79 ? C35 8J3 501 A 1 HETATM 33 C C38 8J3 . . . C 3 3.143 -5.867 67.858 1 54.27 ? C38 8J3 501 A 1 HETATM 34 C C33 8J3 . . . C 3 4.066 -4.698 68.132 1 55.65 ? C33 8J3 501 A 1 HETATM 35 C C32 8J3 . . . C 3 3.592 -3.938 69.366 1 54.9 ? C32 8J3 501 A 1 HETATM 36 C C36 8J3 . . . C 3 2.652 -6.041 70.313 1 52.69 ? C36 8J3 501 A 1 HETATM 37 C C31 8J3 . . . C 3 3.606 -4.885 70.582 1 59.08 ? C31 8J3 501 A 1 HETATM 38 C C30 8J3 . . . C 3 5.016 -5.415 70.837 1 54.87 ? C30 8J3 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 38 #