data_5XZV # _model_server_result.job_id mMRSRy-iTWqGA5JWBaopaw _model_server_result.datetime_utc '2025-02-28 18:13:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5XZV # _exptl.entry_id 5XZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XZV _cell.length_a 116.69 _cell.length_b 116.69 _cell.length_c 140.804 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5XZV _atom_sites.fract_transf_matrix[1][1] 0.00857 _atom_sites.fract_transf_matrix[1][2] 0.004948 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 501 501 ANP ANP . D 2 ANP B 1 501 501 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 -24.368 68.438 144.417 0.8 66.19 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . C 2 -25.046 69.443 143.52 0.8 56 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . C 2 -22.864 68.556 144.405 0.8 69.58 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . C 2 -24.864 67.025 144.243 0.8 70.12 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . C 2 -25.857 67.978 147.097 0.8 61.58 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . C 2 -27.292 68.298 146.76 0.8 58.04 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . C 2 -25.414 66.537 147.074 0.8 46.97 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . C 2 -24.82 68.92 146.041 0.8 68.08 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . C 2 -26.583 69.564 149.294 0.8 60.18 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . C 2 -26.147 70.956 148.915 0.8 65.11 -1 O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . C 2 -28.008 69.134 149.064 0.8 59.89 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . C 2 -25.602 68.501 148.594 0.8 67.28 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . C 2 -26.229 69.35 150.844 0.8 57.95 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . C 2 -25.246 70.18 151.444 0.8 47.68 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . C 2 -25.558 70.396 152.915 0.8 60.24 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . C 2 -24.437 71.041 153.518 0.8 74.57 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . C 2 -26.775 71.291 153.077 0.8 59.16 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . C 2 -27.815 70.574 153.755 0.8 57.69 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . C 2 -26.283 72.526 153.823 0.8 59.31 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . C 2 -26.875 72.691 155.119 0.8 45.25 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . C 2 -24.785 72.34 153.989 0.8 70.05 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . C 2 -24.042 73.313 153.153 0.8 71.49 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . C 2 -24.223 73.487 151.833 0.8 75.27 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . C 2 -23.403 74.451 151.348 0.8 75.41 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . C 2 -22.685 74.923 152.38 0.8 69.02 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . C 2 -21.639 75.953 152.564 0.8 60.25 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . C 2 -21.19 76.687 151.518 0.8 63.45 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . C 2 -21.15 76.131 153.809 0.8 49.57 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . C 2 -21.588 75.406 154.853 0.8 61.35 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . C 2 -22.534 74.456 154.758 0.8 63.57 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . C 2 -23.111 74.172 153.569 0.8 71.06 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #