data_5Y01
#
_model_server_result.job_id            R1ZVhaCywW7gMseZYX8gRQ 
_model_server_result.datetime_utc      '2025-07-31 22:51:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y01 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5Y01 
#
_exptl.entry_id    5Y01 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Y01 
_cell.length_a            161.797 
_cell.length_b            161.797 
_cell.length_c            161.797 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y01 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 103 A LEU 69 1_555 A N1 CRQ 104 A CRQ 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.552 ? 
covale ? covale2 A C3 CRQ 104 A CRQ 70 1_555 A N PHE 105 A PHE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 302 n n 
P O2 PO4 sing 303 n n 
P O3 PO4 sing 304 n n 
P O4 PO4 sing 305 n n 
#
_atom_sites.entry_id                     5Y01 
_atom_sites.fract_transf_matrix[1][1]    0.006181 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006181 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006181 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 301 240 PO4 PO4 . 
C 2 PO4 A 1 302 241 PO4 PO4 . 
D 2 PO4 A 1 303 242 PO4 PO4 . 
E 2 PO4 A 1 304 243 PO4 PO4 . 
F 3 HOH A 1 401 268 HOH HOH . 
F 3 HOH A 2 402 267 HOH HOH . 
F 3 HOH A 3 403 273 HOH HOH . 
F 3 HOH A 4 404 250 HOH HOH . 
F 3 HOH A 5 405 249 HOH HOH . 
F 3 HOH A 6 406 276 HOH HOH . 
F 3 HOH A 7 407 264 HOH HOH . 
F 3 HOH A 8 408 255 HOH HOH . 
F 3 HOH A 9 409 251 HOH HOH . 
F 3 HOH A 10 410 265 HOH HOH . 
F 3 HOH A 11 411 246 HOH HOH . 
F 3 HOH A 12 412 275 HOH HOH . 
F 3 HOH A 13 413 270 HOH HOH . 
F 3 HOH A 14 414 245 HOH HOH . 
F 3 HOH A 15 415 253 HOH HOH . 
F 3 HOH A 16 416 262 HOH HOH . 
F 3 HOH A 17 417 248 HOH HOH . 
F 3 HOH A 18 418 274 HOH HOH . 
F 3 HOH A 19 419 277 HOH HOH . 
F 3 HOH A 20 420 257 HOH HOH . 
F 3 HOH A 21 421 269 HOH HOH . 
F 3 HOH A 22 422 261 HOH HOH . 
F 3 HOH A 23 423 260 HOH HOH . 
F 3 HOH A 24 424 278 HOH HOH . 
F 3 HOH A 25 425 271 HOH HOH . 
F 3 HOH A 26 426 247 HOH HOH . 
F 3 HOH A 27 427 252 HOH HOH . 
F 3 HOH A 28 428 259 HOH HOH . 
F 3 HOH A 29 429 244 HOH HOH . 
F 3 HOH A 30 430 258 HOH HOH . 
F 3 HOH A 31 431 254 HOH HOH . 
F 3 HOH A 32 432 263 HOH HOH . 
F 3 HOH A 33 433 272 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . B 2 -3.045 -25.76 1.661 1 50.8 ? P PO4 301 A 1 
HETATM 2 O O1 PO4 . . . B 2 -2.598 -24.497 0.858 1 40.97 ? O1 PO4 301 A 1 
HETATM 3 O O2 PO4 . . . B 2 -1.734 -26.34 1.984 1 41.67 ? O2 PO4 301 A 1 
HETATM 4 O O3 PO4 . . . B 2 -3.912 -26.84 0.913 1 52.34 -1 O3 PO4 301 A 1 
HETATM 5 O O4 PO4 . . . B 2 -3.779 -25.602 2.931 1 38.75 ? O4 PO4 301 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#