data_5Y0P # _model_server_result.job_id jpCpJXa_VYgkPJxiZumJPA _model_server_result.datetime_utc '2024-10-27 02:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 5Y0P # _exptl.entry_id 5Y0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y0P _cell.length_a 67.995 _cell.length_b 67.999 _cell.length_c 211.168 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id TAT _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 TAT doub 290 n y C2 N3 TAT sing 291 n y N1 C6 TAT sing 292 n y N3 C4 TAT doub 293 n y O2' C2' TAT sing 294 n n O3' C3' TAT sing 295 n n C6 N6 TAT sing 296 n n C6 C5 TAT doub 297 n y C4 C5 TAT sing 298 n y C4 N9 TAT sing 299 n y C5 N7 TAT sing 300 n y C1' N9 TAT sing 301 n n C1' C2' TAT sing 302 n n C1' O4' TAT sing 303 n n N9 C8 TAT sing 304 n y C2' C3' TAT sing 305 n n N7 C8 TAT doub 306 n y C3' C4' TAT sing 307 n n O4' C4' TAT sing 308 n n C4' C5' TAT sing 309 n n O2A PA TAT doub 310 n n C5' O5' TAT sing 311 n n O5' PA TAT sing 312 n n PA O3A TAT sing 313 n n PA S1G TAT sing 314 n n O3A PB TAT sing 315 n n O1B PB TAT doub 316 n n PB O3B TAT sing 317 n n PB O2B TAT sing 318 n n O3B PG TAT sing 319 n n O2G PG TAT doub 320 n n O1A PG TAT sing 321 n n PG O3G TAT sing 322 n n C2 H1 TAT sing 323 n n N6 H2 TAT sing 324 n n N6 H3 TAT sing 325 n n C8 H4 TAT sing 326 n n C1' H5 TAT sing 327 n n O1A H6 TAT sing 328 n n S1G H7 TAT sing 329 n n C2' H8 TAT sing 330 n n O2' H9 TAT sing 331 n n O2B H10 TAT sing 332 n n C3' H11 TAT sing 333 n n O3' H12 TAT sing 334 n n O3G H13 TAT sing 335 n n C4' H14 TAT sing 336 n n C5' H15 TAT sing 337 n n C5' H16 TAT sing 338 n n # _atom_sites.entry_id 5Y0P _atom_sites.fract_transf_matrix[1][1] 0.014707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TAT A 1 1001 1001 TAT TAT . D 2 TAT B 1 1001 1001 TAT TAT . E 3 HOH A 1 1101 116 HOH HOH . E 3 HOH A 2 1102 9 HOH HOH . E 3 HOH A 3 1103 38 HOH HOH . E 3 HOH A 4 1104 21 HOH HOH . E 3 HOH A 5 1105 73 HOH HOH . E 3 HOH A 6 1106 88 HOH HOH . E 3 HOH A 7 1107 44 HOH HOH . E 3 HOH A 8 1108 32 HOH HOH . E 3 HOH A 9 1109 146 HOH HOH . E 3 HOH A 10 1110 143 HOH HOH . E 3 HOH A 11 1111 20 HOH HOH . E 3 HOH A 12 1112 99 HOH HOH . E 3 HOH A 13 1113 2 HOH HOH . E 3 HOH A 14 1114 24 HOH HOH . E 3 HOH A 15 1115 58 HOH HOH . E 3 HOH A 16 1116 41 HOH HOH . E 3 HOH A 17 1117 52 HOH HOH . E 3 HOH A 18 1118 72 HOH HOH . E 3 HOH A 19 1119 17 HOH HOH . E 3 HOH A 20 1120 37 HOH HOH . E 3 HOH A 21 1121 14 HOH HOH . E 3 HOH A 22 1122 12 HOH HOH . E 3 HOH A 23 1123 27 HOH HOH . E 3 HOH A 24 1124 40 HOH HOH . E 3 HOH A 25 1125 97 HOH HOH . E 3 HOH A 26 1126 92 HOH HOH . E 3 HOH A 27 1127 129 HOH HOH . E 3 HOH A 28 1128 28 HOH HOH . E 3 HOH A 29 1129 15 HOH HOH . E 3 HOH A 30 1130 134 HOH HOH . E 3 HOH A 31 1131 55 HOH HOH . E 3 HOH A 32 1132 108 HOH HOH . E 3 HOH A 33 1133 117 HOH HOH . E 3 HOH A 34 1134 80 HOH HOH . E 3 HOH A 35 1135 29 HOH HOH . E 3 HOH A 36 1136 5 HOH HOH . E 3 HOH A 37 1137 64 HOH HOH . E 3 HOH A 38 1138 110 HOH HOH . E 3 HOH A 39 1139 109 HOH HOH . F 3 HOH B 1 1101 90 HOH HOH . F 3 HOH B 2 1102 4 HOH HOH . F 3 HOH B 3 1103 1 HOH HOH . F 3 HOH B 4 1104 43 HOH HOH . F 3 HOH B 5 1105 118 HOH HOH . F 3 HOH B 6 1106 105 HOH HOH . F 3 HOH B 7 1107 3 HOH HOH . F 3 HOH B 8 1108 82 HOH HOH . F 3 HOH B 9 1109 23 HOH HOH . F 3 HOH B 10 1110 16 HOH HOH . F 3 HOH B 11 1111 67 HOH HOH . F 3 HOH B 12 1112 19 HOH HOH . F 3 HOH B 13 1113 33 HOH HOH . F 3 HOH B 14 1114 6 HOH HOH . F 3 HOH B 15 1115 65 HOH HOH . F 3 HOH B 16 1116 93 HOH HOH . F 3 HOH B 17 1117 34 HOH HOH . F 3 HOH B 18 1118 130 HOH HOH . F 3 HOH B 19 1119 74 HOH HOH . F 3 HOH B 20 1120 128 HOH HOH . F 3 HOH B 21 1121 69 HOH HOH . F 3 HOH B 22 1122 78 HOH HOH . F 3 HOH B 23 1123 138 HOH HOH . F 3 HOH B 24 1124 8 HOH HOH . F 3 HOH B 25 1125 131 HOH HOH . F 3 HOH B 26 1126 76 HOH HOH . F 3 HOH B 27 1127 46 HOH HOH . F 3 HOH B 28 1128 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TAT . . . C 2 17.068 4.067 -63.666 1 85.47 ? N1 TAT 1001 A 1 HETATM 2 C C2 TAT . . . C 2 17.779 2.99 -64.042 1 86.39 ? C2 TAT 1001 A 1 HETATM 3 N N3 TAT . . . C 2 18.184 2.024 -63.211 1 86.52 ? N3 TAT 1001 A 1 HETATM 4 C C4 TAT . . . C 2 17.873 2.085 -61.904 1 81.53 ? C4 TAT 1001 A 1 HETATM 5 C C5 TAT . . . C 2 17.094 3.222 -61.402 1 83.11 ? C5 TAT 1001 A 1 HETATM 6 C C6 TAT . . . C 2 16.688 4.251 -62.386 1 84.64 ? C6 TAT 1001 A 1 HETATM 7 N N6 TAT . . . C 2 15.973 5.342 -62.023 1 83.92 ? N6 TAT 1001 A 1 HETATM 8 N N7 TAT . . . C 2 16.937 3.014 -60.085 1 83.36 ? N7 TAT 1001 A 1 HETATM 9 C C8 TAT . . . C 2 17.566 1.847 -59.778 1 80.31 ? C8 TAT 1001 A 1 HETATM 10 N N9 TAT . . . C 2 18.126 1.302 -60.869 1 74.88 ? N9 TAT 1001 A 1 HETATM 11 P PA TAT . . . C 2 19.481 -0.685 -55.942 1 56.16 ? PA TAT 1001 A 1 HETATM 12 P PB TAT . . . C 2 20.574 2.019 -56.023 1 66.16 ? PB TAT 1001 A 1 HETATM 13 P PG TAT . . . C 2 20.55 4.785 -55.502 1 67.45 ? PG TAT 1001 A 1 HETATM 14 C C1' TAT . . . C 2 18.888 0.04 -60.963 1 69.52 ? C1' TAT 1001 A 1 HETATM 15 O O1A TAT . . . C 2 20.635 5.477 -54.164 1 65.17 ? O1A TAT 1001 A 1 HETATM 16 O O1B TAT . . . C 2 20.079 2.262 -57.422 1 76.25 ? O1B TAT 1001 A 1 HETATM 17 S S1G TAT . . . C 2 21.161 -1.599 -55.613 1 62.67 ? S1G TAT 1001 A 1 HETATM 18 C C2' TAT . . . C 2 20.293 0.128 -60.397 1 73.04 ? C2' TAT 1001 A 1 HETATM 19 O O2' TAT . . . C 2 21.252 0.558 -61.365 1 77.53 ? O2' TAT 1001 A 1 HETATM 20 O O2A TAT . . . C 2 18.144 -1.251 -55.5 1 48.19 ? O2A TAT 1001 A 1 HETATM 21 O O2B TAT . . . C 2 22.056 1.834 -55.747 1 53.88 ? O2B TAT 1001 A 1 HETATM 22 O O2G TAT . . . C 2 19.438 5.281 -56.395 1 67.82 ? O2G TAT 1001 A 1 HETATM 23 C C3' TAT . . . C 2 20.556 -1.292 -59.928 1 71.98 ? C3' TAT 1001 A 1 HETATM 24 O O3' TAT . . . C 2 21.18 -2.077 -60.955 1 71.61 ? O3' TAT 1001 A 1 HETATM 25 O O3A TAT . . . C 2 19.662 0.835 -55.401 1 49.81 ? O3A TAT 1001 A 1 HETATM 26 O O3B TAT . . . C 2 20.103 3.277 -55.129 1 91.18 ? O3B TAT 1001 A 1 HETATM 27 O O3G TAT . . . C 2 21.884 4.635 -56.19 1 70.55 ? O3G TAT 1001 A 1 HETATM 28 C C4' TAT . . . C 2 19.17 -1.848 -59.635 1 69.25 ? C4' TAT 1001 A 1 HETATM 29 O O4' TAT . . . C 2 18.219 -0.965 -60.213 1 68.12 ? O4' TAT 1001 A 1 HETATM 30 C C5' TAT . . . C 2 18.889 -1.884 -58.143 1 69.79 ? C5' TAT 1001 A 1 HETATM 31 O O5' TAT . . . C 2 19.357 -0.678 -57.537 1 74.01 ? O5' TAT 1001 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #