data_5Y0P
#
_model_server_result.job_id            1j6Yxp1LXsMnCjLfl6kRtQ 
_model_server_result.datetime_utc      '2024-10-27 02:22:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    5Y0P 
#
_exptl.entry_id    5Y0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Y0P 
_cell.length_a            67.995 
_cell.length_b            67.999 
_cell.length_c            211.168 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                TAT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N1 TAT doub 290 n y 
C2 N3 TAT sing 291 n y 
N1 C6 TAT sing 292 n y 
N3 C4 TAT doub 293 n y 
O2' C2' TAT sing 294 n n 
O3' C3' TAT sing 295 n n 
C6 N6 TAT sing 296 n n 
C6 C5 TAT doub 297 n y 
C4 C5 TAT sing 298 n y 
C4 N9 TAT sing 299 n y 
C5 N7 TAT sing 300 n y 
C1' N9 TAT sing 301 n n 
C1' C2' TAT sing 302 n n 
C1' O4' TAT sing 303 n n 
N9 C8 TAT sing 304 n y 
C2' C3' TAT sing 305 n n 
N7 C8 TAT doub 306 n y 
C3' C4' TAT sing 307 n n 
O4' C4' TAT sing 308 n n 
C4' C5' TAT sing 309 n n 
O2A PA TAT doub 310 n n 
C5' O5' TAT sing 311 n n 
O5' PA TAT sing 312 n n 
PA O3A TAT sing 313 n n 
PA S1G TAT sing 314 n n 
O3A PB TAT sing 315 n n 
O1B PB TAT doub 316 n n 
PB O3B TAT sing 317 n n 
PB O2B TAT sing 318 n n 
O3B PG TAT sing 319 n n 
O2G PG TAT doub 320 n n 
O1A PG TAT sing 321 n n 
PG O3G TAT sing 322 n n 
C2 H1 TAT sing 323 n n 
N6 H2 TAT sing 324 n n 
N6 H3 TAT sing 325 n n 
C8 H4 TAT sing 326 n n 
C1' H5 TAT sing 327 n n 
O1A H6 TAT sing 328 n n 
S1G H7 TAT sing 329 n n 
C2' H8 TAT sing 330 n n 
O2' H9 TAT sing 331 n n 
O2B H10 TAT sing 332 n n 
C3' H11 TAT sing 333 n n 
O3' H12 TAT sing 334 n n 
O3G H13 TAT sing 335 n n 
C4' H14 TAT sing 336 n n 
C5' H15 TAT sing 337 n n 
C5' H16 TAT sing 338 n n 
#
_atom_sites.entry_id                     5Y0P 
_atom_sites.fract_transf_matrix[1][1]    0.014707 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004736 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TAT A 1 1001 1001 TAT TAT . 
D 2 TAT B 1 1001 1001 TAT TAT . 
E 3 HOH A 1 1101 116 HOH HOH . 
E 3 HOH A 2 1102 9 HOH HOH . 
E 3 HOH A 3 1103 38 HOH HOH . 
E 3 HOH A 4 1104 21 HOH HOH . 
E 3 HOH A 5 1105 73 HOH HOH . 
E 3 HOH A 6 1106 88 HOH HOH . 
E 3 HOH A 7 1107 44 HOH HOH . 
E 3 HOH A 8 1108 32 HOH HOH . 
E 3 HOH A 9 1109 146 HOH HOH . 
E 3 HOH A 10 1110 143 HOH HOH . 
E 3 HOH A 11 1111 20 HOH HOH . 
E 3 HOH A 12 1112 99 HOH HOH . 
E 3 HOH A 13 1113 2 HOH HOH . 
E 3 HOH A 14 1114 24 HOH HOH . 
E 3 HOH A 15 1115 58 HOH HOH . 
E 3 HOH A 16 1116 41 HOH HOH . 
E 3 HOH A 17 1117 52 HOH HOH . 
E 3 HOH A 18 1118 72 HOH HOH . 
E 3 HOH A 19 1119 17 HOH HOH . 
E 3 HOH A 20 1120 37 HOH HOH . 
E 3 HOH A 21 1121 14 HOH HOH . 
E 3 HOH A 22 1122 12 HOH HOH . 
E 3 HOH A 23 1123 27 HOH HOH . 
E 3 HOH A 24 1124 40 HOH HOH . 
E 3 HOH A 25 1125 97 HOH HOH . 
E 3 HOH A 26 1126 92 HOH HOH . 
E 3 HOH A 27 1127 129 HOH HOH . 
E 3 HOH A 28 1128 28 HOH HOH . 
E 3 HOH A 29 1129 15 HOH HOH . 
E 3 HOH A 30 1130 134 HOH HOH . 
E 3 HOH A 31 1131 55 HOH HOH . 
E 3 HOH A 32 1132 108 HOH HOH . 
E 3 HOH A 33 1133 117 HOH HOH . 
E 3 HOH A 34 1134 80 HOH HOH . 
E 3 HOH A 35 1135 29 HOH HOH . 
E 3 HOH A 36 1136 5 HOH HOH . 
E 3 HOH A 37 1137 64 HOH HOH . 
E 3 HOH A 38 1138 110 HOH HOH . 
E 3 HOH A 39 1139 109 HOH HOH . 
F 3 HOH B 1 1101 90 HOH HOH . 
F 3 HOH B 2 1102 4 HOH HOH . 
F 3 HOH B 3 1103 1 HOH HOH . 
F 3 HOH B 4 1104 43 HOH HOH . 
F 3 HOH B 5 1105 118 HOH HOH . 
F 3 HOH B 6 1106 105 HOH HOH . 
F 3 HOH B 7 1107 3 HOH HOH . 
F 3 HOH B 8 1108 82 HOH HOH . 
F 3 HOH B 9 1109 23 HOH HOH . 
F 3 HOH B 10 1110 16 HOH HOH . 
F 3 HOH B 11 1111 67 HOH HOH . 
F 3 HOH B 12 1112 19 HOH HOH . 
F 3 HOH B 13 1113 33 HOH HOH . 
F 3 HOH B 14 1114 6 HOH HOH . 
F 3 HOH B 15 1115 65 HOH HOH . 
F 3 HOH B 16 1116 93 HOH HOH . 
F 3 HOH B 17 1117 34 HOH HOH . 
F 3 HOH B 18 1118 130 HOH HOH . 
F 3 HOH B 19 1119 74 HOH HOH . 
F 3 HOH B 20 1120 128 HOH HOH . 
F 3 HOH B 21 1121 69 HOH HOH . 
F 3 HOH B 22 1122 78 HOH HOH . 
F 3 HOH B 23 1123 138 HOH HOH . 
F 3 HOH B 24 1124 8 HOH HOH . 
F 3 HOH B 25 1125 131 HOH HOH . 
F 3 HOH B 26 1126 76 HOH HOH . 
F 3 HOH B 27 1127 46 HOH HOH . 
F 3 HOH B 28 1128 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 TAT . . . D 2 12.455 -1.751 10.67 1 56.67 ? N1 TAT 1001 B 1 
HETATM 2 C C2 TAT . . . D 2 13.584 -2.353 11.09 1 52.17 ? C2 TAT 1001 B 1 
HETATM 3 N N3 TAT . . . D 2 14.599 -2.645 10.272 1 50.96 ? N3 TAT 1001 B 1 
HETATM 4 C C4 TAT . . . D 2 14.528 -2.334 8.955 1 56.62 ? C4 TAT 1001 B 1 
HETATM 5 C C5 TAT . . . D 2 13.327 -1.68 8.42 1 60.67 ? C5 TAT 1001 B 1 
HETATM 6 C C6 TAT . . . D 2 12.248 -1.395 9.383 1 61.32 ? C6 TAT 1001 B 1 
HETATM 7 N N6 TAT . . . D 2 11.102 -0.797 8.985 1 66.35 ? N6 TAT 1001 B 1 
HETATM 8 N N7 TAT . . . D 2 13.53 -1.498 7.104 1 58.47 ? N7 TAT 1001 B 1 
HETATM 9 C C8 TAT . . . D 2 14.766 -1.984 6.82 1 57.27 ? C8 TAT 1001 B 1 
HETATM 10 N N9 TAT . . . D 2 15.35 -2.479 7.923 1 52.33 ? N9 TAT 1001 B 1 
HETATM 11 P PA TAT . . . D 2 17.827 -2.919 3.122 1 54.22 ? PA TAT 1001 B 1 
HETATM 12 P PB TAT . . . D 2 15.189 -4.142 3.119 1 63.5 ? PB TAT 1001 B 1 
HETATM 13 P PG TAT . . . D 2 12.56 -3.411 3.237 1 115.34 ? PG TAT 1001 B 1 
HETATM 14 C C1' TAT . . . D 2 16.68 -3.092 8.028 1 46.72 ? C1' TAT 1001 B 1 
HETATM 15 O O1A TAT . . . D 2 12.822 -2.296 4.216 1 114.22 ? O1A TAT 1001 B 1 
HETATM 16 O O1B TAT . . . D 2 15.294 -5.571 2.665 1 52.35 ? O1B TAT 1001 B 1 
HETATM 17 S S1G TAT . . . D 2 18.857 -4.535 2.802 1 69.84 ? S1G TAT 1001 B 1 
HETATM 18 C C2' TAT . . . D 2 16.764 -4.341 7.184 1 49.02 ? C2' TAT 1001 B 1 
HETATM 19 O O2' TAT . . . D 2 16.415 -5.51 7.928 1 55.3 ? O2' TAT 1001 B 1 
HETATM 20 O O2A TAT . . . D 2 18.345 -1.541 2.792 1 51.08 ? O2A TAT 1001 B 1 
HETATM 21 O O2B TAT . . . D 2 15.043 -3.914 4.592 1 78.14 ? O2B TAT 1001 B 1 
HETATM 22 O O2G TAT . . . D 2 11.502 -3.096 2.216 1 116.64 ? O2G TAT 1001 B 1 
HETATM 23 C C3' TAT . . . D 2 18.207 -4.35 6.744 1 52.44 ? C3' TAT 1001 B 1 
HETATM 24 O O3' TAT . . . D 2 18.964 -5.21 7.596 1 58.62 ? O3' TAT 1001 B 1 
HETATM 25 O O3A TAT . . . D 2 16.334 -3.158 2.524 1 60.45 ? O3A TAT 1001 B 1 
HETATM 26 O O3B TAT . . . D 2 13.916 -3.489 2.393 1 84.29 ? O3B TAT 1001 B 1 
HETATM 27 O O3G TAT . . . D 2 12.478 -4.791 3.844 1 115.15 ? O3G TAT 1001 B 1 
HETATM 28 C C4' TAT . . . D 2 18.667 -2.904 6.868 1 50.53 ? C4' TAT 1001 B 1 
HETATM 29 O O4' TAT . . . D 2 17.654 -2.174 7.547 1 44.95 ? O4' TAT 1001 B 1 
HETATM 30 C C5' TAT . . . D 2 18.769 -2.293 5.482 1 57.85 ? C5' TAT 1001 B 1 
HETATM 31 O O5' TAT . . . D 2 17.694 -2.839 4.713 1 67.24 ? O5' TAT 1001 B 1 
#
_model_server_stats.io_time_ms              99 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#