data_5Y12 # _model_server_result.job_id -jAwY6oDJRXqD2_OQh9hfw _model_server_result.datetime_utc '2024-10-19 03:47:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5Y12 # _exptl.entry_id 5Y12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.391 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(4-methoxynaphthalen-1-yl)sulfonylamino]pentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y12 _cell.length_a 32.56 _cell.length_b 53.61 _cell.length_c 75.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H19 N O5 S' _chem_comp.formula_weight 337.391 _chem_comp.id 8JX _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(4-methoxynaphthalen-1-yl)sulfonylamino]pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAG 8JX sing 1 n y CAF CAJ 8JX doub 2 n y CAG CAK 8JX doub 3 n y CAJ CAU 8JX sing 4 n y CAK CAV 8JX sing 5 n y CAU CAV 8JX sing 6 n y CAU CAS 8JX doub 7 n y CAV CAT 8JX doub 8 n y OAD SAW 8JX doub 9 n n OAQ CAS 8JX sing 10 n n OAQ CAA 8JX sing 11 n n CAS CAH 8JX sing 12 n y CAT SAW 8JX sing 13 n n CAT CAI 8JX sing 14 n y SAW NAP 8JX sing 15 n n SAW OAC 8JX doub 16 n n NAP CAN 8JX sing 17 n n CAH CAI 8JX doub 18 n y CAN CAL 8JX sing 19 n n CAL CAM 8JX sing 20 n n CAO CAM 8JX sing 21 n n CAO CAR 8JX sing 22 n n CAR OAB 8JX doub 23 n n CAR OAE 8JX sing 24 n n OAE H1 8JX sing 25 n n CAO H2 8JX sing 26 n n CAO H3 8JX sing 27 n n CAM H4 8JX sing 28 n n CAM H5 8JX sing 29 n n CAL H6 8JX sing 30 n n CAL H7 8JX sing 31 n n CAN H8 8JX sing 32 n n CAN H9 8JX sing 33 n n NAP H10 8JX sing 34 n n CAK H11 8JX sing 35 n n CAG H12 8JX sing 36 n n CAF H13 8JX sing 37 n n CAJ H14 8JX sing 38 n n CAA H15 8JX sing 39 n n CAA H16 8JX sing 40 n n CAA H17 8JX sing 41 n n CAH H18 8JX sing 42 n n CAI H19 8JX sing 43 n n # _atom_sites.entry_id 5Y12 _atom_sites.fract_transf_matrix[1][1] 0.030713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8JX A 1 201 1 8JX DRG . C 3 HOH A 1 301 16 HOH HOH . C 3 HOH A 2 302 87 HOH HOH . C 3 HOH A 3 303 18 HOH HOH . C 3 HOH A 4 304 69 HOH HOH . C 3 HOH A 5 305 79 HOH HOH . C 3 HOH A 6 306 10 HOH HOH . C 3 HOH A 7 307 67 HOH HOH . C 3 HOH A 8 308 15 HOH HOH . C 3 HOH A 9 309 48 HOH HOH . C 3 HOH A 10 310 12 HOH HOH . C 3 HOH A 11 311 47 HOH HOH . C 3 HOH A 12 312 64 HOH HOH . C 3 HOH A 13 313 86 HOH HOH . C 3 HOH A 14 314 30 HOH HOH . C 3 HOH A 15 315 2 HOH HOH . C 3 HOH A 16 316 21 HOH HOH . C 3 HOH A 17 317 77 HOH HOH . C 3 HOH A 18 318 50 HOH HOH . C 3 HOH A 19 319 75 HOH HOH . C 3 HOH A 20 320 72 HOH HOH . C 3 HOH A 21 321 11 HOH HOH . C 3 HOH A 22 322 32 HOH HOH . C 3 HOH A 23 323 66 HOH HOH . C 3 HOH A 24 324 25 HOH HOH . C 3 HOH A 25 325 4 HOH HOH . C 3 HOH A 26 326 49 HOH HOH . C 3 HOH A 27 327 35 HOH HOH . C 3 HOH A 28 328 61 HOH HOH . C 3 HOH A 29 329 76 HOH HOH . C 3 HOH A 30 330 9 HOH HOH . C 3 HOH A 31 331 22 HOH HOH . C 3 HOH A 32 332 73 HOH HOH . C 3 HOH A 33 333 19 HOH HOH . C 3 HOH A 34 334 5 HOH HOH . C 3 HOH A 35 335 6 HOH HOH . C 3 HOH A 36 336 20 HOH HOH . C 3 HOH A 37 337 68 HOH HOH . C 3 HOH A 38 338 83 HOH HOH . C 3 HOH A 39 339 38 HOH HOH . C 3 HOH A 40 340 52 HOH HOH . C 3 HOH A 41 341 1 HOH HOH . C 3 HOH A 42 342 29 HOH HOH . C 3 HOH A 43 343 24 HOH HOH . C 3 HOH A 44 344 8 HOH HOH . C 3 HOH A 45 345 46 HOH HOH . C 3 HOH A 46 346 43 HOH HOH . C 3 HOH A 47 347 26 HOH HOH . C 3 HOH A 48 348 58 HOH HOH . C 3 HOH A 49 349 59 HOH HOH . C 3 HOH A 50 350 23 HOH HOH . C 3 HOH A 51 351 42 HOH HOH . C 3 HOH A 52 352 81 HOH HOH . C 3 HOH A 53 353 7 HOH HOH . C 3 HOH A 54 354 60 HOH HOH . C 3 HOH A 55 355 45 HOH HOH . C 3 HOH A 56 356 17 HOH HOH . C 3 HOH A 57 357 13 HOH HOH . C 3 HOH A 58 358 55 HOH HOH . C 3 HOH A 59 359 51 HOH HOH . C 3 HOH A 60 360 37 HOH HOH . C 3 HOH A 61 361 33 HOH HOH . C 3 HOH A 62 362 28 HOH HOH . C 3 HOH A 63 363 3 HOH HOH . C 3 HOH A 64 364 84 HOH HOH . C 3 HOH A 65 365 27 HOH HOH . C 3 HOH A 66 366 80 HOH HOH . C 3 HOH A 67 367 39 HOH HOH . C 3 HOH A 68 368 82 HOH HOH . C 3 HOH A 69 369 14 HOH HOH . C 3 HOH A 70 370 34 HOH HOH . C 3 HOH A 71 371 74 HOH HOH . C 3 HOH A 72 372 31 HOH HOH . C 3 HOH A 73 373 89 HOH HOH . C 3 HOH A 74 374 53 HOH HOH . C 3 HOH A 75 375 63 HOH HOH . C 3 HOH A 76 376 57 HOH HOH . C 3 HOH A 77 377 41 HOH HOH . C 3 HOH A 78 378 65 HOH HOH . C 3 HOH A 79 379 56 HOH HOH . C 3 HOH A 80 380 36 HOH HOH . C 3 HOH A 81 381 44 HOH HOH . C 3 HOH A 82 382 40 HOH HOH . C 3 HOH A 83 383 85 HOH HOH . C 3 HOH A 84 384 54 HOH HOH . C 3 HOH A 85 385 88 HOH HOH . C 3 HOH A 86 386 71 HOH HOH . C 3 HOH A 87 387 62 HOH HOH . C 3 HOH A 88 388 70 HOH HOH . C 3 HOH A 89 389 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB 8JX . . . B 2 -5.871 4.589 -15.067 1 17.04 ? OAB 8JX 201 A 1 HETATM 2 C CAR 8JX . . . B 2 -6.151 5.773 -15.365 1 21.17 ? CAR 8JX 201 A 1 HETATM 3 O OAE 8JX . . . B 2 -5.576 6.732 -14.784 1 24.33 ? OAE 8JX 201 A 1 HETATM 4 C CAO 8JX . . . B 2 -7.156 6.056 -16.417 1 29.91 ? CAO 8JX 201 A 1 HETATM 5 C CAM 8JX . . . B 2 -7.979 7.305 -16.207 1 26.55 ? CAM 8JX 201 A 1 HETATM 6 C CAL 8JX . . . B 2 -7.773 8.442 -17.173 1 24.16 ? CAL 8JX 201 A 1 HETATM 7 C CAN 8JX . . . B 2 -7.813 8.121 -18.631 1 19.99 ? CAN 8JX 201 A 1 HETATM 8 N NAP 8JX . . . B 2 -7.665 9.338 -19.563 1 15.76 ? NAP 8JX 201 A 1 HETATM 9 S SAW 8JX . . . B 2 -6.122 9.795 -19.696 1 12.17 ? SAW 8JX 201 A 1 HETATM 10 O OAC 8JX . . . B 2 -5.605 10.365 -18.429 1 14.34 ? OAC 8JX 201 A 1 HETATM 11 O OAD 8JX . . . B 2 -6.046 10.777 -20.787 1 13.8 ? OAD 8JX 201 A 1 HETATM 12 C CAT 8JX . . . B 2 -5.101 8.312 -20.077 1 10.78 ? CAT 8JX 201 A 1 HETATM 13 C CAV 8JX . . . B 2 -5.17 7.654 -21.297 1 13.07 ? CAV 8JX 201 A 1 HETATM 14 C CAK 8JX . . . B 2 -6.046 8.106 -22.347 1 9.64 ? CAK 8JX 201 A 1 HETATM 15 C CAG 8JX . . . B 2 -6.087 7.456 -23.532 1 13.27 ? CAG 8JX 201 A 1 HETATM 16 C CAF 8JX . . . B 2 -5.252 6.306 -23.745 1 12.26 ? CAF 8JX 201 A 1 HETATM 17 C CAJ 8JX . . . B 2 -4.42 5.867 -22.732 1 10.54 ? CAJ 8JX 201 A 1 HETATM 18 C CAU 8JX . . . B 2 -4.373 6.556 -21.506 1 10.08 ? CAU 8JX 201 A 1 HETATM 19 C CAS 8JX . . . B 2 -3.506 6.106 -20.48 1 12.02 ? CAS 8JX 201 A 1 HETATM 20 O OAQ 8JX . . . B 2 -2.706 4.989 -20.697 1 13.62 ? OAQ 8JX 201 A 1 HETATM 21 C CAA 8JX . . . B 2 -2.062 4.398 -19.643 1 11.09 ? CAA 8JX 201 A 1 HETATM 22 C CAH 8JX . . . B 2 -3.455 6.75 -19.276 1 11.91 ? CAH 8JX 201 A 1 HETATM 23 C CAI 8JX . . . B 2 -4.247 7.859 -19.068 1 14.93 ? CAI 8JX 201 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #