data_5Y13 # _model_server_result.job_id tBY3nKSHBI0YuamARh-_Bg _model_server_result.datetime_utc '2024-10-19 03:39:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5Y13 # _exptl.entry_id 5Y13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.261 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(4-bromanylnaphthalen-1-yl)sulfonylamino]pentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y13 _cell.length_a 32.69 _cell.length_b 53.64 _cell.length_c 75.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H16 Br N O4 S' _chem_comp.formula_weight 386.261 _chem_comp.id 8K0 _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(4-bromanylnaphthalen-1-yl)sulfonylamino]pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAG 8K0 sing 1 n y CAF CAJ 8K0 doub 2 n y CAG CAK 8K0 doub 3 n y CAJ CAT 8K0 sing 4 n y CAK CAU 8K0 sing 5 n y CAT CAU 8K0 sing 6 n y CAT CAR 8K0 doub 7 n y CAU CAS 8K0 doub 8 n y OAB SAV 8K0 doub 9 n n CAR BRAE 8K0 sing 10 n n CAR CAH 8K0 sing 11 n y CAS SAV 8K0 sing 12 n n CAS CAI 8K0 sing 13 n y SAV NAP 8K0 sing 14 n n SAV OAC 8K0 doub 15 n n NAP CAN 8K0 sing 16 n n CAN CAL 8K0 sing 17 n n CAH CAI 8K0 doub 18 n y CAL CAM 8K0 sing 19 n n CAM CAO 8K0 sing 20 n n CAO CAQ 8K0 sing 21 n n CAQ OAA 8K0 doub 22 n n CAQ OAD 8K0 sing 23 n n OAD H1 8K0 sing 24 n n CAO H2 8K0 sing 25 n n CAO H3 8K0 sing 26 n n CAM H4 8K0 sing 27 n n CAM H5 8K0 sing 28 n n CAL H6 8K0 sing 29 n n CAL H7 8K0 sing 30 n n CAN H8 8K0 sing 31 n n CAN H9 8K0 sing 32 n n NAP H10 8K0 sing 33 n n CAK H11 8K0 sing 34 n n CAG H12 8K0 sing 35 n n CAF H13 8K0 sing 36 n n CAJ H14 8K0 sing 37 n n CAH H15 8K0 sing 38 n n CAI H16 8K0 sing 39 n n # _atom_sites.entry_id 5Y13 _atom_sites.fract_transf_matrix[1][1] 0.03059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8K0 A 1 201 1 8K0 DRG . C 3 HOH A 1 301 63 HOH HOH . C 3 HOH A 2 302 89 HOH HOH . C 3 HOH A 3 303 88 HOH HOH . C 3 HOH A 4 304 71 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 60 HOH HOH . C 3 HOH A 7 307 58 HOH HOH . C 3 HOH A 8 308 21 HOH HOH . C 3 HOH A 9 309 16 HOH HOH . C 3 HOH A 10 310 18 HOH HOH . C 3 HOH A 11 311 59 HOH HOH . C 3 HOH A 12 312 64 HOH HOH . C 3 HOH A 13 313 19 HOH HOH . C 3 HOH A 14 314 23 HOH HOH . C 3 HOH A 15 315 66 HOH HOH . C 3 HOH A 16 316 81 HOH HOH . C 3 HOH A 17 317 14 HOH HOH . C 3 HOH A 18 318 79 HOH HOH . C 3 HOH A 19 319 11 HOH HOH . C 3 HOH A 20 320 78 HOH HOH . C 3 HOH A 21 321 56 HOH HOH . C 3 HOH A 22 322 1 HOH HOH . C 3 HOH A 23 323 7 HOH HOH . C 3 HOH A 24 324 57 HOH HOH . C 3 HOH A 25 325 20 HOH HOH . C 3 HOH A 26 326 38 HOH HOH . C 3 HOH A 27 327 25 HOH HOH . C 3 HOH A 28 328 52 HOH HOH . C 3 HOH A 29 329 62 HOH HOH . C 3 HOH A 30 330 8 HOH HOH . C 3 HOH A 31 331 28 HOH HOH . C 3 HOH A 32 332 4 HOH HOH . C 3 HOH A 33 333 29 HOH HOH . C 3 HOH A 34 334 40 HOH HOH . C 3 HOH A 35 335 3 HOH HOH . C 3 HOH A 36 336 15 HOH HOH . C 3 HOH A 37 337 30 HOH HOH . C 3 HOH A 38 338 22 HOH HOH . C 3 HOH A 39 339 42 HOH HOH . C 3 HOH A 40 340 49 HOH HOH . C 3 HOH A 41 341 32 HOH HOH . C 3 HOH A 42 342 35 HOH HOH . C 3 HOH A 43 343 68 HOH HOH . C 3 HOH A 44 344 9 HOH HOH . C 3 HOH A 45 345 6 HOH HOH . C 3 HOH A 46 346 43 HOH HOH . C 3 HOH A 47 347 27 HOH HOH . C 3 HOH A 48 348 36 HOH HOH . C 3 HOH A 49 349 83 HOH HOH . C 3 HOH A 50 350 17 HOH HOH . C 3 HOH A 51 351 48 HOH HOH . C 3 HOH A 52 352 37 HOH HOH . C 3 HOH A 53 353 90 HOH HOH . C 3 HOH A 54 354 39 HOH HOH . C 3 HOH A 55 355 74 HOH HOH . C 3 HOH A 56 356 44 HOH HOH . C 3 HOH A 57 357 53 HOH HOH . C 3 HOH A 58 358 45 HOH HOH . C 3 HOH A 59 359 50 HOH HOH . C 3 HOH A 60 360 47 HOH HOH . C 3 HOH A 61 361 33 HOH HOH . C 3 HOH A 62 362 24 HOH HOH . C 3 HOH A 63 363 69 HOH HOH . C 3 HOH A 64 364 76 HOH HOH . C 3 HOH A 65 365 13 HOH HOH . C 3 HOH A 66 366 82 HOH HOH . C 3 HOH A 67 367 12 HOH HOH . C 3 HOH A 68 368 31 HOH HOH . C 3 HOH A 69 369 2 HOH HOH . C 3 HOH A 70 370 73 HOH HOH . C 3 HOH A 71 371 67 HOH HOH . C 3 HOH A 72 372 61 HOH HOH . C 3 HOH A 73 373 46 HOH HOH . C 3 HOH A 74 374 34 HOH HOH . C 3 HOH A 75 375 86 HOH HOH . C 3 HOH A 76 376 70 HOH HOH . C 3 HOH A 77 377 75 HOH HOH . C 3 HOH A 78 378 54 HOH HOH . C 3 HOH A 79 379 41 HOH HOH . C 3 HOH A 80 380 26 HOH HOH . C 3 HOH A 81 381 10 HOH HOH . C 3 HOH A 82 382 85 HOH HOH . C 3 HOH A 83 383 51 HOH HOH . C 3 HOH A 84 384 77 HOH HOH . C 3 HOH A 85 385 87 HOH HOH . C 3 HOH A 86 386 55 HOH HOH . C 3 HOH A 87 387 80 HOH HOH . C 3 HOH A 88 388 84 HOH HOH . C 3 HOH A 89 389 65 HOH HOH . C 3 HOH A 90 390 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 8K0 . . . B 2 -5.772 4.549 -14.912 1 23.81 ? OAA 8K0 201 A 1 HETATM 2 C CAQ 8K0 . . . B 2 -6.25 5.723 -15.199 1 24.76 ? CAQ 8K0 201 A 1 HETATM 3 O OAD 8K0 . . . B 2 -5.72 6.797 -14.717 1 28.19 ? OAD 8K0 201 A 1 HETATM 4 C CAO 8K0 . . . B 2 -7.417 5.816 -16.125 1 28.89 ? CAO 8K0 201 A 1 HETATM 5 C CAM 8K0 . . . B 2 -7.121 6.407 -17.425 1 33.65 ? CAM 8K0 201 A 1 HETATM 6 C CAL 8K0 . . . B 2 -7.567 7.86 -17.627 1 30.87 ? CAL 8K0 201 A 1 HETATM 7 C CAN 8K0 . . . B 2 -7.914 8.222 -19.054 1 29.83 ? CAN 8K0 201 A 1 HETATM 8 N NAP 8K0 . . . B 2 -7.653 9.585 -19.469 1 26.67 ? NAP 8K0 201 A 1 HETATM 9 S SAV 8K0 . . . B 2 -6.074 9.898 -19.68 1 20.77 ? SAV 8K0 201 A 1 HETATM 10 O OAB 8K0 . . . B 2 -5.995 10.838 -20.889 1 20.23 ? OAB 8K0 201 A 1 HETATM 11 O OAC 8K0 . . . B 2 -5.541 10.54 -18.46 1 24.86 ? OAC 8K0 201 A 1 HETATM 12 C CAS 8K0 . . . B 2 -5.127 8.386 -19.969 1 18.1 ? CAS 8K0 201 A 1 HETATM 13 C CAU 8K0 . . . B 2 -5.161 7.618 -21.211 1 20.66 ? CAU 8K0 201 A 1 HETATM 14 C CAK 8K0 . . . B 2 -5.946 8.031 -22.276 1 17.82 ? CAK 8K0 201 A 1 HETATM 15 C CAG 8K0 . . . B 2 -5.962 7.278 -23.473 1 23.89 ? CAG 8K0 201 A 1 HETATM 16 C CAF 8K0 . . . B 2 -5.185 6.104 -23.577 1 22.98 ? CAF 8K0 201 A 1 HETATM 17 C CAJ 8K0 . . . B 2 -4.42 5.696 -22.526 1 24.15 ? CAJ 8K0 201 A 1 HETATM 18 C CAT 8K0 . . . B 2 -4.383 6.454 -21.314 1 19.17 ? CAT 8K0 201 A 1 HETATM 19 C CAR 8K0 . . . B 2 -3.596 6.046 -20.207 1 24.08 ? CAR 8K0 201 A 1 HETATM 20 BR BRAE 8K0 . . . B 2 -2.451 4.442 -20.098 1 51.78 ? BRAE 8K0 201 A 1 HETATM 21 C CAH 8K0 . . . B 2 -3.588 6.814 -19.014 1 21.48 ? CAH 8K0 201 A 1 HETATM 22 C CAI 8K0 . . . B 2 -4.352 7.972 -18.917 1 23.26 ? CAI 8K0 201 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #