data_5Y1E # _model_server_result.job_id bDiLvgYYSgZadFS8IyUSlw _model_server_result.datetime_utc '2024-10-11 03:13:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5Y1E # _exptl.entry_id 5Y1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.6 _cell.angle_gamma 90 _cell.entry_id 5Y1E _cell.length_a 112.594 _cell.length_b 50.857 _cell.length_c 55.252 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id SER _chem_comp.mon_nstd_flag y _chem_comp.name SERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SER sing 352 n n N H SER sing 353 n n N H2 SER sing 354 n n CA C SER sing 355 n n CA CB SER sing 356 n n CA HA SER sing 357 n n C O SER doub 358 n n C OXT SER sing 359 n n CB OG SER sing 360 n n CB HB2 SER sing 361 n n CB HB3 SER sing 362 n n OG HG SER sing 363 n n OXT HXT SER sing 364 n n # _atom_sites.entry_id 5Y1E _atom_sites.fract_transf_matrix[1][1] 0.008881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00248 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 401 1 NAD NAD . C 3 SER A 1 402 1 SER SER . D 4 HOH A 1 501 108 HOH HOH . D 4 HOH A 2 502 3 HOH HOH . D 4 HOH A 3 503 139 HOH HOH . D 4 HOH A 4 504 23 HOH HOH . D 4 HOH A 5 505 10 HOH HOH . D 4 HOH A 6 506 25 HOH HOH . D 4 HOH A 7 507 112 HOH HOH . D 4 HOH A 8 508 89 HOH HOH . D 4 HOH A 9 509 20 HOH HOH . D 4 HOH A 10 510 117 HOH HOH . D 4 HOH A 11 511 38 HOH HOH . D 4 HOH A 12 512 87 HOH HOH . D 4 HOH A 13 513 39 HOH HOH . D 4 HOH A 14 514 119 HOH HOH . D 4 HOH A 15 515 84 HOH HOH . D 4 HOH A 16 516 97 HOH HOH . D 4 HOH A 17 517 77 HOH HOH . D 4 HOH A 18 518 153 HOH HOH . D 4 HOH A 19 519 144 HOH HOH . D 4 HOH A 20 520 46 HOH HOH . D 4 HOH A 21 521 74 HOH HOH . D 4 HOH A 22 522 45 HOH HOH . D 4 HOH A 23 523 116 HOH HOH . D 4 HOH A 24 524 15 HOH HOH . D 4 HOH A 25 525 68 HOH HOH . D 4 HOH A 26 526 174 HOH HOH . D 4 HOH A 27 527 173 HOH HOH . D 4 HOH A 28 528 66 HOH HOH . D 4 HOH A 29 529 5 HOH HOH . D 4 HOH A 30 530 48 HOH HOH . D 4 HOH A 31 531 59 HOH HOH . D 4 HOH A 32 532 37 HOH HOH . D 4 HOH A 33 533 64 HOH HOH . D 4 HOH A 34 534 47 HOH HOH . D 4 HOH A 35 535 22 HOH HOH . D 4 HOH A 36 536 1 HOH HOH . D 4 HOH A 37 537 80 HOH HOH . D 4 HOH A 38 538 33 HOH HOH . D 4 HOH A 39 539 21 HOH HOH . D 4 HOH A 40 540 125 HOH HOH . D 4 HOH A 41 541 113 HOH HOH . D 4 HOH A 42 542 118 HOH HOH . D 4 HOH A 43 543 2 HOH HOH . D 4 HOH A 44 544 3 HOH HOH . D 4 HOH A 45 545 115 HOH HOH . D 4 HOH A 46 546 24 HOH HOH . D 4 HOH A 47 547 172 HOH HOH . D 4 HOH A 48 548 8 HOH HOH . D 4 HOH A 49 549 128 HOH HOH . D 4 HOH A 50 550 109 HOH HOH . D 4 HOH A 51 551 88 HOH HOH . D 4 HOH A 52 552 78 HOH HOH . D 4 HOH A 53 553 49 HOH HOH . D 4 HOH A 54 554 74 HOH HOH . D 4 HOH A 55 555 60 HOH HOH . D 4 HOH A 56 556 42 HOH HOH . D 4 HOH A 57 557 91 HOH HOH . D 4 HOH A 58 558 129 HOH HOH . D 4 HOH A 59 559 90 HOH HOH . D 4 HOH A 60 560 11 HOH HOH . D 4 HOH A 61 561 31 HOH HOH . D 4 HOH A 62 562 130 HOH HOH . D 4 HOH A 63 563 146 HOH HOH . D 4 HOH A 64 564 148 HOH HOH . D 4 HOH A 65 565 147 HOH HOH . D 4 HOH A 66 566 17 HOH HOH . D 4 HOH A 67 567 75 HOH HOH . D 4 HOH A 68 568 56 HOH HOH . D 4 HOH A 69 569 92 HOH HOH . D 4 HOH A 70 570 20 HOH HOH . D 4 HOH A 71 571 29 HOH HOH . D 4 HOH A 72 572 14 HOH HOH . D 4 HOH A 73 573 18 HOH HOH . D 4 HOH A 74 574 58 HOH HOH . D 4 HOH A 75 575 93 HOH HOH . D 4 HOH A 76 576 40 HOH HOH . D 4 HOH A 77 577 106 HOH HOH . D 4 HOH A 78 578 14 HOH HOH . D 4 HOH A 79 579 51 HOH HOH . D 4 HOH A 80 580 127 HOH HOH . D 4 HOH A 81 581 163 HOH HOH . D 4 HOH A 82 582 4 HOH HOH . D 4 HOH A 83 583 142 HOH HOH . D 4 HOH A 84 584 107 HOH HOH . D 4 HOH A 85 585 176 HOH HOH . D 4 HOH A 86 586 19 HOH HOH . D 4 HOH A 87 587 32 HOH HOH . D 4 HOH A 88 588 65 HOH HOH . D 4 HOH A 89 589 24 HOH HOH . D 4 HOH A 90 590 101 HOH HOH . D 4 HOH A 91 591 55 HOH HOH . D 4 HOH A 92 592 122 HOH HOH . D 4 HOH A 93 593 34 HOH HOH . D 4 HOH A 94 594 86 HOH HOH . D 4 HOH A 95 595 13 HOH HOH . D 4 HOH A 96 596 63 HOH HOH . D 4 HOH A 97 597 6 HOH HOH . D 4 HOH A 98 598 100 HOH HOH . D 4 HOH A 99 599 138 HOH HOH . D 4 HOH A 100 600 83 HOH HOH . D 4 HOH A 101 601 53 HOH HOH . D 4 HOH A 102 602 102 HOH HOH . D 4 HOH A 103 603 18 HOH HOH . D 4 HOH A 104 604 10 HOH HOH . D 4 HOH A 105 605 25 HOH HOH . D 4 HOH A 106 606 124 HOH HOH . D 4 HOH A 107 607 50 HOH HOH . D 4 HOH A 108 608 94 HOH HOH . D 4 HOH A 109 609 16 HOH HOH . D 4 HOH A 110 610 26 HOH HOH . D 4 HOH A 111 611 111 HOH HOH . D 4 HOH A 112 612 110 HOH HOH . D 4 HOH A 113 613 79 HOH HOH . D 4 HOH A 114 614 26 HOH HOH . D 4 HOH A 115 615 135 HOH HOH . D 4 HOH A 116 616 67 HOH HOH . D 4 HOH A 117 617 44 HOH HOH . D 4 HOH A 118 618 36 HOH HOH . D 4 HOH A 119 619 27 HOH HOH . D 4 HOH A 120 620 126 HOH HOH . D 4 HOH A 121 621 73 HOH HOH . D 4 HOH A 122 622 54 HOH HOH . D 4 HOH A 123 623 41 HOH HOH . D 4 HOH A 124 624 82 HOH HOH . D 4 HOH A 125 625 72 HOH HOH . D 4 HOH A 126 626 12 HOH HOH . D 4 HOH A 127 627 31 HOH HOH . D 4 HOH A 128 628 9 HOH HOH . D 4 HOH A 129 629 61 HOH HOH . D 4 HOH A 130 630 52 HOH HOH . D 4 HOH A 131 631 28 HOH HOH . D 4 HOH A 132 632 7 HOH HOH . D 4 HOH A 133 633 179 HOH HOH . D 4 HOH A 134 634 95 HOH HOH . D 4 HOH A 135 635 62 HOH HOH . D 4 HOH A 136 636 21 HOH HOH . D 4 HOH A 137 637 79 HOH HOH . D 4 HOH A 138 638 134 HOH HOH . D 4 HOH A 139 639 103 HOH HOH . D 4 HOH A 140 640 70 HOH HOH . D 4 HOH A 141 641 5 HOH HOH . D 4 HOH A 142 642 149 HOH HOH . D 4 HOH A 143 643 115 HOH HOH . D 4 HOH A 144 644 30 HOH HOH . D 4 HOH A 145 645 28 HOH HOH . D 4 HOH A 146 646 141 HOH HOH . D 4 HOH A 147 647 98 HOH HOH . D 4 HOH A 148 648 85 HOH HOH . D 4 HOH A 149 649 99 HOH HOH . D 4 HOH A 150 650 35 HOH HOH . D 4 HOH A 151 651 69 HOH HOH . D 4 HOH A 152 652 76 HOH HOH . D 4 HOH A 153 653 181 HOH HOH . D 4 HOH A 154 654 123 HOH HOH . D 4 HOH A 155 655 159 HOH HOH . D 4 HOH A 156 656 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SER . . . C 3 21.872 -4.834 11.907 1 32.81 ? N SER 402 A 1 HETATM 2 C CA SER . . . C 3 20.677 -5.717 11.655 1 35.86 ? CA SER 402 A 1 HETATM 3 C C SER . . . C 3 21.24 -7.103 11.529 1 36.73 ? C SER 402 A 1 HETATM 4 O O SER . . . C 3 22.468 -7.151 11.237 1 27.18 ? O SER 402 A 1 HETATM 5 C CB SER . . . C 3 19.898 -5.308 10.374 1 38.46 ? CB SER 402 A 1 HETATM 6 O OG SER . . . C 3 18.485 -5.155 10.654 1 22.1 ? OG SER 402 A 1 HETATM 7 O OXT SER . . . C 3 20.515 -8.099 11.747 1 24.21 ? OXT SER 402 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #