data_5Y1J # _model_server_result.job_id AAdN7q5-qY16ovtEf_ExBw _model_server_result.datetime_utc '2024-10-18 04:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5Y1J # _exptl.entry_id 5Y1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.36 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[2-fluoranyl-4-(3-methoxyphenyl)phenyl]carbamoyl]cyclopentene-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y1J _cell.length_a 34.668 _cell.length_b 162.046 _cell.length_c 115.619 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H18 F N O4' _chem_comp.formula_weight 355.36 _chem_comp.id D5H _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[2-fluoranyl-4-(3-methoxyphenyl)phenyl]carbamoyl]cyclopentene-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Vidofludimus, 2-[[2-fluoro-4-(3-methoxyphenyl)phenyl]carbamoyl]cyclopentene-1-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 D5H sing 83 n n C18 C14 D5H sing 84 n n C17 C16 D5H sing 85 n n O1 C13 D5H doub 86 n n C14 C13 D5H sing 87 n n C14 C15 D5H doub 88 n n C13 N D5H sing 89 n n C16 C15 D5H sing 90 n n C11 C12 D5H doub 91 n y C11 C10 D5H sing 92 n y C12 C7 D5H sing 93 n y C15 C19 D5H sing 94 n n N C10 D5H sing 95 n n C10 C9 D5H doub 96 n y C O D5H sing 97 n n C7 C5 D5H sing 98 n n C7 C8 D5H doub 99 n y C6 C5 D5H doub 100 n y C6 C1 D5H sing 101 n y C5 C4 D5H sing 102 n y C1 O D5H sing 103 n n C1 C2 D5H doub 104 n y C4 C3 D5H doub 105 n y C9 C8 D5H sing 106 n y C9 F D5H sing 107 n n C2 C3 D5H sing 108 n y C19 O3 D5H doub 109 n n C19 O2 D5H sing 110 n n C8 H1 D5H sing 111 n n C4 H2 D5H sing 112 n n C3 H3 D5H sing 113 n n C2 H4 D5H sing 114 n n C H5 D5H sing 115 n n C H6 D5H sing 116 n n C H7 D5H sing 117 n n C6 H8 D5H sing 118 n n C12 H9 D5H sing 119 n n C11 H10 D5H sing 120 n n N H11 D5H sing 121 n n O2 H12 D5H sing 122 n n C18 H13 D5H sing 123 n n C18 H14 D5H sing 124 n n C17 H15 D5H sing 125 n n C17 H16 D5H sing 126 n n C16 H17 D5H sing 127 n n C16 H18 D5H sing 128 n n # _atom_sites.entry_id 5Y1J _atom_sites.fract_transf_matrix[1][1] 0.028845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 D5H A 1 501 1 D5H D5H . D 4 HOH A 1 601 156 HOH HOH . D 4 HOH A 2 602 44 HOH HOH . D 4 HOH A 3 603 150 HOH HOH . D 4 HOH A 4 604 26 HOH HOH . D 4 HOH A 5 605 165 HOH HOH . D 4 HOH A 6 606 73 HOH HOH . D 4 HOH A 7 607 59 HOH HOH . D 4 HOH A 8 608 163 HOH HOH . D 4 HOH A 9 609 145 HOH HOH . D 4 HOH A 10 610 113 HOH HOH . D 4 HOH A 11 611 153 HOH HOH . D 4 HOH A 12 612 17 HOH HOH . D 4 HOH A 13 613 61 HOH HOH . D 4 HOH A 14 614 48 HOH HOH . D 4 HOH A 15 615 16 HOH HOH . D 4 HOH A 16 616 57 HOH HOH . D 4 HOH A 17 617 116 HOH HOH . D 4 HOH A 18 618 105 HOH HOH . D 4 HOH A 19 619 149 HOH HOH . D 4 HOH A 20 620 35 HOH HOH . D 4 HOH A 21 621 142 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 120 HOH HOH . D 4 HOH A 24 624 82 HOH HOH . D 4 HOH A 25 625 160 HOH HOH . D 4 HOH A 26 626 11 HOH HOH . D 4 HOH A 27 627 102 HOH HOH . D 4 HOH A 28 628 39 HOH HOH . D 4 HOH A 29 629 80 HOH HOH . D 4 HOH A 30 630 1 HOH HOH . D 4 HOH A 31 631 46 HOH HOH . D 4 HOH A 32 632 127 HOH HOH . D 4 HOH A 33 633 41 HOH HOH . D 4 HOH A 34 634 21 HOH HOH . D 4 HOH A 35 635 60 HOH HOH . D 4 HOH A 36 636 6 HOH HOH . D 4 HOH A 37 637 20 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 154 HOH HOH . D 4 HOH A 40 640 76 HOH HOH . D 4 HOH A 41 641 148 HOH HOH . D 4 HOH A 42 642 63 HOH HOH . D 4 HOH A 43 643 99 HOH HOH . D 4 HOH A 44 644 36 HOH HOH . D 4 HOH A 45 645 5 HOH HOH . D 4 HOH A 46 646 13 HOH HOH . D 4 HOH A 47 647 56 HOH HOH . D 4 HOH A 48 648 32 HOH HOH . D 4 HOH A 49 649 23 HOH HOH . D 4 HOH A 50 650 12 HOH HOH . D 4 HOH A 51 651 2 HOH HOH . D 4 HOH A 52 652 94 HOH HOH . D 4 HOH A 53 653 3 HOH HOH . D 4 HOH A 54 654 18 HOH HOH . D 4 HOH A 55 655 164 HOH HOH . D 4 HOH A 56 656 81 HOH HOH . D 4 HOH A 57 657 125 HOH HOH . D 4 HOH A 58 658 64 HOH HOH . D 4 HOH A 59 659 52 HOH HOH . D 4 HOH A 60 660 167 HOH HOH . D 4 HOH A 61 661 54 HOH HOH . D 4 HOH A 62 662 42 HOH HOH . D 4 HOH A 63 663 98 HOH HOH . D 4 HOH A 64 664 91 HOH HOH . D 4 HOH A 65 665 19 HOH HOH . D 4 HOH A 66 666 131 HOH HOH . D 4 HOH A 67 667 132 HOH HOH . D 4 HOH A 68 668 58 HOH HOH . D 4 HOH A 69 669 7 HOH HOH . D 4 HOH A 70 670 25 HOH HOH . D 4 HOH A 71 671 88 HOH HOH . D 4 HOH A 72 672 119 HOH HOH . D 4 HOH A 73 673 66 HOH HOH . D 4 HOH A 74 674 85 HOH HOH . D 4 HOH A 75 675 152 HOH HOH . D 4 HOH A 76 676 55 HOH HOH . D 4 HOH A 77 677 28 HOH HOH . D 4 HOH A 78 678 159 HOH HOH . D 4 HOH A 79 679 45 HOH HOH . D 4 HOH A 80 680 15 HOH HOH . D 4 HOH A 81 681 115 HOH HOH . D 4 HOH A 82 682 133 HOH HOH . D 4 HOH A 83 683 40 HOH HOH . D 4 HOH A 84 684 34 HOH HOH . D 4 HOH A 85 685 29 HOH HOH . D 4 HOH A 86 686 87 HOH HOH . D 4 HOH A 87 687 31 HOH HOH . D 4 HOH A 88 688 51 HOH HOH . D 4 HOH A 89 689 151 HOH HOH . D 4 HOH A 90 690 107 HOH HOH . D 4 HOH A 91 691 110 HOH HOH . D 4 HOH A 92 692 144 HOH HOH . D 4 HOH A 93 693 8 HOH HOH . D 4 HOH A 94 694 130 HOH HOH . D 4 HOH A 95 695 92 HOH HOH . D 4 HOH A 96 696 100 HOH HOH . D 4 HOH A 97 697 37 HOH HOH . D 4 HOH A 98 698 4 HOH HOH . D 4 HOH A 99 699 53 HOH HOH . D 4 HOH A 100 700 117 HOH HOH . D 4 HOH A 101 701 70 HOH HOH . D 4 HOH A 102 702 162 HOH HOH . D 4 HOH A 103 703 78 HOH HOH . D 4 HOH A 104 704 83 HOH HOH . D 4 HOH A 105 705 72 HOH HOH . D 4 HOH A 106 706 169 HOH HOH . D 4 HOH A 107 707 109 HOH HOH . D 4 HOH A 108 708 111 HOH HOH . D 4 HOH A 109 709 141 HOH HOH . D 4 HOH A 110 710 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F D5H . . . C 3 6.4 66.53 44.305 1 21.32 ? F D5H 501 A 1 HETATM 2 C C9 D5H . . . C 3 7.454 66.027 43.779 1 19.24 ? C9 D5H 501 A 1 HETATM 3 C C8 D5H . . . C 3 8.652 66.646 43.941 1 20 ? C8 D5H 501 A 1 HETATM 4 C C7 D5H . . . C 3 9.808 66.157 43.429 1 21.76 ? C7 D5H 501 A 1 HETATM 5 C C5 D5H . . . C 3 11.111 66.874 43.611 1 21.21 ? C5 D5H 501 A 1 HETATM 6 C C4 D5H . . . C 3 12.274 66.191 43.735 1 18.86 ? C4 D5H 501 A 1 HETATM 7 C C3 D5H . . . C 3 13.451 66.819 43.895 1 24.18 ? C3 D5H 501 A 1 HETATM 8 C C2 D5H . . . C 3 13.535 68.171 43.872 1 19.07 ? C2 D5H 501 A 1 HETATM 9 C C1 D5H . . . C 3 12.396 68.905 43.717 1 18.88 ? C1 D5H 501 A 1 HETATM 10 O O D5H . . . C 3 12.471 70.251 43.73 1 20.5 ? O D5H 501 A 1 HETATM 11 C C D5H . . . C 3 11.535 71.047 43.083 1 21.4 ? C D5H 501 A 1 HETATM 12 C C6 D5H . . . C 3 11.189 68.243 43.594 1 17.49 ? C6 D5H 501 A 1 HETATM 13 C C12 D5H . . . C 3 9.722 64.984 42.714 1 20.83 ? C12 D5H 501 A 1 HETATM 14 C C11 D5H . . . C 3 8.539 64.329 42.515 1 20.25 ? C11 D5H 501 A 1 HETATM 15 C C10 D5H . . . C 3 7.358 64.782 43.04 1 18.32 ? C10 D5H 501 A 1 HETATM 16 N N D5H . . . C 3 6.135 64.243 42.925 1 19.19 ? N D5H 501 A 1 HETATM 17 C C13 D5H . . . C 3 5.769 63.143 42.317 1 20.99 ? C13 D5H 501 A 1 HETATM 18 O O1 D5H . . . C 3 6.566 62.458 41.784 1 21.22 ? O1 D5H 501 A 1 HETATM 19 C C14 D5H . . . C 3 4.372 62.708 42.215 1 21.13 ? C14 D5H 501 A 1 HETATM 20 C C15 D5H . . . C 3 3.302 63.083 42.882 1 21.53 ? C15 D5H 501 A 1 HETATM 21 C C19 D5H . . . C 3 3.177 64.122 43.881 1 22.76 ? C19 D5H 501 A 1 HETATM 22 O O3 D5H . . . C 3 2.033 64.43 44.297 1 25.02 ? O3 D5H 501 A 1 HETATM 23 O O2 D5H . . . C 3 4.048 64.727 44.36 1 22.23 ? O2 D5H 501 A 1 HETATM 24 C C18 D5H . . . C 3 4.022 61.639 41.222 1 23.98 ? C18 D5H 501 A 1 HETATM 25 C C17 D5H . . . C 3 2.53 61.528 41.267 1 22 ? C17 D5H 501 A 1 HETATM 26 C C16 D5H . . . C 3 2.095 62.28 42.506 1 22.48 ? C16 D5H 501 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #