data_5Y25 # _model_server_result.job_id XC7Ekr9WtJW92JrRmFanjg _model_server_result.datetime_utc '2025-08-31 02:33:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y25 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1100}' # _entry.id 5Y25 # _exptl.entry_id 5Y25 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 589.033 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-N-[4-[(3-chloranyl-4-fluoranyl-phenyl)amino]-7-(3-morpholin-4-ylpropoxy)quinazolin-6-yl]-1-(2-fluoranylethanoyl)pyrrolidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y25 _cell.length_a 148.291 _cell.length_b 148.291 _cell.length_c 148.291 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y25 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 107 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C19 _struct_conn.ptnr2_label_comp_id 8LU _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 8LU _struct_conn.ptnr2_auth_seq_id 1100 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.767 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H31 Cl F2 N6 O4' _chem_comp.formula_weight 589.033 _chem_comp.id 8LU _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-N-[4-[(3-chloranyl-4-fluoranyl-phenyl)amino]-7-(3-morpholin-4-ylpropoxy)quinazolin-6-yl]-1-(2-fluoranylethanoyl)pyrrolidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C1 8LU sing 1 n n C1 C2 8LU doub 2 n y C1 C4 8LU sing 3 n y CL1 C4 8LU sing 4 n n C2 C3 8LU sing 5 n y C4 C5 8LU doub 6 n y C3 C6 8LU doub 7 n y C5 C6 8LU sing 8 n y C6 N1 8LU sing 9 n n N1 C7 8LU sing 10 n n N2 C7 8LU doub 11 n y N2 C8 8LU sing 12 n y C7 C10 8LU sing 13 n y C8 N3 8LU doub 14 n y C10 C11 8LU doub 15 n y C10 C9 8LU sing 16 n y N3 C9 8LU sing 17 n y C11 C12 8LU sing 18 n y C9 C28 8LU doub 19 n y C12 N4 8LU sing 20 n n C12 C20 8LU doub 21 n y O1 C18 8LU doub 22 n n C28 C20 8LU sing 23 n y F2 C19 8LU sing 24 n n N4 C13 8LU sing 25 n n C20 O3 8LU sing 26 n n C18 C19 8LU sing 27 n n C18 N5 8LU sing 28 n n C13 O2 8LU doub 29 n n C13 C14 8LU sing 30 n n C14 N5 8LU sing 31 n n C14 C15 8LU sing 32 n n O3 C21 8LU sing 33 n n N5 C17 8LU sing 34 n n C21 C22 8LU sing 35 n n C15 C16 8LU sing 36 n n C17 C16 8LU sing 37 n n C22 C23 8LU sing 38 n n C23 N6 8LU sing 39 n n N6 C27 8LU sing 40 n n N6 C24 8LU sing 41 n n C27 C26 8LU sing 42 n n C24 C25 8LU sing 43 n n C26 O4 8LU sing 44 n n C25 O4 8LU sing 45 n n C2 H1 8LU sing 46 n n C3 H2 8LU sing 47 n n C5 H3 8LU sing 48 n n N1 H4 8LU sing 49 n n C8 H5 8LU sing 50 n n C11 H6 8LU sing 51 n n N4 H7 8LU sing 52 n n C14 H8 8LU sing 53 n n C15 H9 8LU sing 54 n n C15 H10 8LU sing 55 n n C16 H11 8LU sing 56 n n C16 H12 8LU sing 57 n n C17 H13 8LU sing 58 n n C17 H14 8LU sing 59 n n C19 H15 8LU sing 60 n n C19 H16 8LU sing 61 n n C21 H17 8LU sing 62 n n C21 H18 8LU sing 63 n n C22 H19 8LU sing 64 n n C22 H20 8LU sing 65 n n C23 H21 8LU sing 66 n n C23 H22 8LU sing 67 n n C24 H24 8LU sing 68 n n C24 H25 8LU sing 69 n n C25 H26 8LU sing 70 n n C25 H27 8LU sing 71 n n C26 H28 8LU sing 72 n n C26 H29 8LU sing 73 n n C27 H30 8LU sing 74 n n C27 H31 8LU sing 75 n n C28 H32 8LU sing 76 n n # _atom_sites.entry_id 5Y25 _atom_sites.fract_transf_matrix[1][1] 0.006743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 8LU _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1100 _pdbx_nonpoly_scheme.auth_seq_num 1100 _pdbx_nonpoly_scheme.pdb_mon_id 8LU _pdbx_nonpoly_scheme.auth_mon_id UNK _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 8LU . . . B 2 1.873 52.5 -30.795 1 75.21 ? F1 8LU 1100 A 1 HETATM 2 C C1 8LU . . . B 2 1.567 52.651 -29.459 1 73.21 ? C1 8LU 1100 A 1 HETATM 3 C C2 8LU . . . B 2 0.098 52.675 -28.987 1 73.98 ? C2 8LU 1100 A 1 HETATM 4 C C3 8LU . . . B 2 -0.177 52.823 -27.692 1 70.01 ? C3 8LU 1100 A 1 HETATM 5 C C4 8LU . . . B 2 2.545 52.774 -28.588 1 69.09 ? C4 8LU 1100 A 1 HETATM 6 CL CL1 8LU . . . B 2 4.236 52.736 -29.17 1 71.51 ? CL1 8LU 1100 A 1 HETATM 7 C C5 8LU . . . B 2 2.236 52.941 -27.086 1 66.35 ? C5 8LU 1100 A 1 HETATM 8 C C6 8LU . . . B 2 0.97 52.966 -26.681 1 69.46 ? C6 8LU 1100 A 1 HETATM 9 N N1 8LU . . . B 2 0.651 53.125 -25.243 1 65.09 ? N1 8LU 1100 A 1 HETATM 10 C C7 8LU . . . B 2 1.395 54.051 -24.383 1 58.68 ? C7 8LU 1100 A 1 HETATM 11 N N2 8LU . . . B 2 2.116 55.073 -24.859 1 55.27 ? N2 8LU 1100 A 1 HETATM 12 C C8 8LU . . . B 2 2.688 55.87 -23.983 1 54.92 ? C8 8LU 1100 A 1 HETATM 13 N N3 8LU . . . B 2 2.791 55.671 -22.696 1 55.8 ? N3 8LU 1100 A 1 HETATM 14 C C9 8LU . . . B 2 2.095 54.649 -22.17 1 57.32 ? C9 8LU 1100 A 1 HETATM 15 C C10 8LU . . . B 2 1.369 53.796 -22.989 1 57.92 ? C10 8LU 1100 A 1 HETATM 16 C C11 8LU . . . B 2 0.642 52.734 -22.456 1 57.84 ? C11 8LU 1100 A 1 HETATM 17 C C12 8LU . . . B 2 0.642 52.527 -21.078 1 59.09 ? C12 8LU 1100 A 1 HETATM 18 N N4 8LU . . . B 2 -0.138 51.37 -20.517 1 65.74 ? N4 8LU 1100 A 1 HETATM 19 C C13 8LU . . . B 2 -1.207 51.619 -19.514 1 66.45 ? C13 8LU 1100 A 1 HETATM 20 C C14 8LU . . . B 2 -1.999 50.412 -18.93 1 69.01 ? C14 8LU 1100 A 1 HETATM 21 C C15 8LU . . . B 2 -1.414 50.081 -17.582 1 66.91 ? C15 8LU 1100 A 1 HETATM 22 C C16 8LU . . . B 2 -2.57 50.322 -16.58 1 70.67 ? C16 8LU 1100 A 1 HETATM 23 C C17 8LU . . . B 2 -3.836 50.364 -17.439 1 67.56 ? C17 8LU 1100 A 1 HETATM 24 N N5 8LU . . . B 2 -3.406 50.753 -18.802 1 64.36 ? N5 8LU 1100 A 1 HETATM 25 C C18 8LU . . . B 2 -4.234 51.356 -19.817 1 65.37 ? C18 8LU 1100 A 1 HETATM 26 C C19 8LU . . . B 2 -5.713 51.655 -19.518 1 69.28 ? C19 8LU 1100 A 1 HETATM 27 F F2 8LU . . . B 2 -6.466 51.539 -20.671 1 70.15 ? F2 8LU 1100 A 1 HETATM 28 O O1 8LU . . . B 2 -3.777 51.624 -20.879 1 64.93 ? O1 8LU 1100 A 1 HETATM 29 O O2 8LU . . . B 2 -1.442 52.716 -19.169 1 63.04 ? O2 8LU 1100 A 1 HETATM 30 C C20 8LU . . . B 2 1.357 53.363 -20.223 1 57.39 ? C20 8LU 1100 A 1 HETATM 31 O O3 8LU . . . B 2 1.338 53.109 -18.814 1 59.93 ? O3 8LU 1100 A 1 HETATM 32 C C21 8LU . . . B 2 1.837 54.147 -17.981 1 59.09 ? C21 8LU 1100 A 1 HETATM 33 C C22 8LU . . . B 2 2.474 53.59 -16.656 1 60.01 ? C22 8LU 1100 A 1 HETATM 34 C C23 8LU . . . B 2 1.478 52.686 -15.795 1 64.26 ? C23 8LU 1100 A 1 HETATM 35 N N6 8LU . . . B 2 0.631 53.414 -15.085 1 64.73 ? N6 8LU 1100 A 1 HETATM 36 C C24 8LU . . . B 2 1.216 54.068 -14.065 1 62.35 ? C24 8LU 1100 A 1 HETATM 37 C C25 8LU . . . B 2 1.487 53.203 -12.802 1 64.73 ? C25 8LU 1100 A 1 HETATM 38 O O4 8LU . . . B 2 0.409 52.393 -12.473 1 69.56 ? O4 8LU 1100 A 1 HETATM 39 C C26 8LU . . . B 2 -0.172 51.725 -13.547 1 67.51 ? C26 8LU 1100 A 1 HETATM 40 C C27 8LU . . . B 2 -0.426 52.702 -14.725 1 67.69 ? C27 8LU 1100 A 1 HETATM 41 C C28 8LU . . . B 2 2.095 54.432 -20.774 1 56.83 ? C28 8LU 1100 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #