data_5Y27 # _model_server_result.job_id 0D6cPgIG6_3cDpLly-QENg _model_server_result.datetime_utc '2024-11-12 20:47:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5Y27 # _exptl.entry_id 5Y27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5Y27 _cell.length_a 86.291 _cell.length_b 86.291 _cell.length_c 59.71 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 23 A ILE 22 1_555 A N MSE 24 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 24 A MSE 23 1_555 A N ARG 25 A ARG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ALA 44 A ALA 43 1_555 A N MSE 45 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 45 A MSE 44 1_555 A N ILE 46 A ILE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LEU 72 A LEU 71 1_555 A N MSE 73 A MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C MSE 73 A MSE 72 1_555 A N PRO 74 A PRO 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale7 B C SER 5 B SER 0 1_555 B N MSE 6 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C MSE 6 B MSE 1 1_555 B N GLU 7 B GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5Y27 _atom_sites.fract_transf_matrix[1][1] 0.011589 _atom_sites.fract_transf_matrix[1][2] 0.006691 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 2 GOL GOL . D 4 HOH A 1 401 120 HOH HOH . D 4 HOH A 2 402 131 HOH HOH . D 4 HOH A 3 403 155 HOH HOH . D 4 HOH A 4 404 119 HOH HOH . D 4 HOH A 5 405 35 HOH HOH . D 4 HOH A 6 406 27 HOH HOH . D 4 HOH A 7 407 200 HOH HOH . D 4 HOH A 8 408 50 HOH HOH . D 4 HOH A 9 409 115 HOH HOH . D 4 HOH A 10 410 214 HOH HOH . D 4 HOH A 11 411 158 HOH HOH . D 4 HOH A 12 412 134 HOH HOH . D 4 HOH A 13 413 146 HOH HOH . D 4 HOH A 14 414 92 HOH HOH . D 4 HOH A 15 415 195 HOH HOH . D 4 HOH A 16 416 6 HOH HOH . D 4 HOH A 17 417 46 HOH HOH . D 4 HOH A 18 418 104 HOH HOH . D 4 HOH A 19 419 123 HOH HOH . D 4 HOH A 20 420 13 HOH HOH . D 4 HOH A 21 421 19 HOH HOH . D 4 HOH A 22 422 66 HOH HOH . D 4 HOH A 23 423 189 HOH HOH . D 4 HOH A 24 424 65 HOH HOH . D 4 HOH A 25 425 40 HOH HOH . D 4 HOH A 26 426 57 HOH HOH . D 4 HOH A 27 427 166 HOH HOH . D 4 HOH A 28 428 78 HOH HOH . D 4 HOH A 29 429 149 HOH HOH . D 4 HOH A 30 430 36 HOH HOH . D 4 HOH A 31 431 100 HOH HOH . D 4 HOH A 32 432 108 HOH HOH . D 4 HOH A 33 433 8 HOH HOH . D 4 HOH A 34 434 137 HOH HOH . D 4 HOH A 35 435 23 HOH HOH . D 4 HOH A 36 436 73 HOH HOH . D 4 HOH A 37 437 39 HOH HOH . D 4 HOH A 38 438 196 HOH HOH . D 4 HOH A 39 439 98 HOH HOH . D 4 HOH A 40 440 7 HOH HOH . D 4 HOH A 41 441 110 HOH HOH . D 4 HOH A 42 442 5 HOH HOH . D 4 HOH A 43 443 12 HOH HOH . D 4 HOH A 44 444 173 HOH HOH . D 4 HOH A 45 445 63 HOH HOH . D 4 HOH A 46 446 183 HOH HOH . D 4 HOH A 47 447 209 HOH HOH . D 4 HOH A 48 448 15 HOH HOH . D 4 HOH A 49 449 174 HOH HOH . D 4 HOH A 50 450 187 HOH HOH . D 4 HOH A 51 451 41 HOH HOH . D 4 HOH A 52 452 121 HOH HOH . D 4 HOH A 53 453 122 HOH HOH . D 4 HOH A 54 454 185 HOH HOH . D 4 HOH A 55 455 94 HOH HOH . D 4 HOH A 56 456 28 HOH HOH . D 4 HOH A 57 457 112 HOH HOH . D 4 HOH A 58 458 191 HOH HOH . D 4 HOH A 59 459 83 HOH HOH . D 4 HOH A 60 460 89 HOH HOH . D 4 HOH A 61 461 60 HOH HOH . D 4 HOH A 62 462 130 HOH HOH . D 4 HOH A 63 463 139 HOH HOH . D 4 HOH A 64 464 38 HOH HOH . D 4 HOH A 65 465 44 HOH HOH . D 4 HOH A 66 466 74 HOH HOH . D 4 HOH A 67 467 54 HOH HOH . D 4 HOH A 68 468 93 HOH HOH . D 4 HOH A 69 469 160 HOH HOH . D 4 HOH A 70 470 176 HOH HOH . D 4 HOH A 71 471 107 HOH HOH . D 4 HOH A 72 472 207 HOH HOH . D 4 HOH A 73 473 190 HOH HOH . D 4 HOH A 74 474 56 HOH HOH . D 4 HOH A 75 475 126 HOH HOH . D 4 HOH A 76 476 206 HOH HOH . D 4 HOH A 77 477 152 HOH HOH . D 4 HOH A 78 478 141 HOH HOH . D 4 HOH A 79 479 148 HOH HOH . D 4 HOH A 80 480 77 HOH HOH . D 4 HOH A 81 481 103 HOH HOH . D 4 HOH A 82 482 25 HOH HOH . D 4 HOH A 83 483 118 HOH HOH . D 4 HOH A 84 484 167 HOH HOH . D 4 HOH A 85 485 111 HOH HOH . D 4 HOH A 86 486 138 HOH HOH . D 4 HOH A 87 487 208 HOH HOH . D 4 HOH A 88 488 145 HOH HOH . D 4 HOH A 89 489 53 HOH HOH . D 4 HOH A 90 490 45 HOH HOH . D 4 HOH A 91 491 76 HOH HOH . D 4 HOH A 92 492 213 HOH HOH . D 4 HOH A 93 493 30 HOH HOH . D 4 HOH A 94 494 162 HOH HOH . D 4 HOH A 95 495 216 HOH HOH . D 4 HOH A 96 496 49 HOH HOH . D 4 HOH A 97 497 175 HOH HOH . D 4 HOH A 98 498 48 HOH HOH . D 4 HOH A 99 499 52 HOH HOH . D 4 HOH A 100 500 140 HOH HOH . D 4 HOH A 101 501 127 HOH HOH . D 4 HOH A 102 502 91 HOH HOH . D 4 HOH A 103 503 90 HOH HOH . D 4 HOH A 104 504 42 HOH HOH . D 4 HOH A 105 505 220 HOH HOH . D 4 HOH A 106 506 79 HOH HOH . D 4 HOH A 107 507 22 HOH HOH . D 4 HOH A 108 508 18 HOH HOH . D 4 HOH A 109 509 109 HOH HOH . D 4 HOH A 110 510 159 HOH HOH . D 4 HOH A 111 511 29 HOH HOH . D 4 HOH A 112 512 26 HOH HOH . D 4 HOH A 113 513 101 HOH HOH . D 4 HOH A 114 514 179 HOH HOH . D 4 HOH A 115 515 129 HOH HOH . D 4 HOH A 116 516 33 HOH HOH . D 4 HOH A 117 517 202 HOH HOH . D 4 HOH A 118 518 177 HOH HOH . D 4 HOH A 119 519 186 HOH HOH . D 4 HOH A 120 520 161 HOH HOH . D 4 HOH A 121 521 157 HOH HOH . D 4 HOH A 122 522 218 HOH HOH . D 4 HOH A 123 523 143 HOH HOH . D 4 HOH A 124 524 217 HOH HOH . D 4 HOH A 125 525 219 HOH HOH . E 4 HOH B 1 101 192 HOH HOH . E 4 HOH B 2 102 102 HOH HOH . E 4 HOH B 3 103 80 HOH HOH . E 4 HOH B 4 104 82 HOH HOH . E 4 HOH B 5 105 16 HOH HOH . E 4 HOH B 6 106 24 HOH HOH . E 4 HOH B 7 107 114 HOH HOH . E 4 HOH B 8 108 37 HOH HOH . E 4 HOH B 9 109 212 HOH HOH . E 4 HOH B 10 110 144 HOH HOH . E 4 HOH B 11 111 86 HOH HOH . E 4 HOH B 12 112 58 HOH HOH . E 4 HOH B 13 113 153 HOH HOH . E 4 HOH B 14 114 85 HOH HOH . E 4 HOH B 15 115 9 HOH HOH . E 4 HOH B 16 116 17 HOH HOH . E 4 HOH B 17 117 171 HOH HOH . E 4 HOH B 18 118 95 HOH HOH . E 4 HOH B 19 119 154 HOH HOH . E 4 HOH B 20 120 150 HOH HOH . E 4 HOH B 21 121 96 HOH HOH . E 4 HOH B 22 122 2 HOH HOH . E 4 HOH B 23 123 20 HOH HOH . E 4 HOH B 24 124 70 HOH HOH . E 4 HOH B 25 125 87 HOH HOH . E 4 HOH B 26 126 75 HOH HOH . E 4 HOH B 27 127 3 HOH HOH . E 4 HOH B 28 128 199 HOH HOH . E 4 HOH B 29 129 164 HOH HOH . E 4 HOH B 30 130 88 HOH HOH . E 4 HOH B 31 131 4 HOH HOH . E 4 HOH B 32 132 1 HOH HOH . E 4 HOH B 33 133 68 HOH HOH . E 4 HOH B 34 134 43 HOH HOH . E 4 HOH B 35 135 10 HOH HOH . E 4 HOH B 36 136 21 HOH HOH . E 4 HOH B 37 137 151 HOH HOH . E 4 HOH B 38 138 178 HOH HOH . E 4 HOH B 39 139 61 HOH HOH . E 4 HOH B 40 140 62 HOH HOH . E 4 HOH B 41 141 81 HOH HOH . E 4 HOH B 42 142 11 HOH HOH . E 4 HOH B 43 143 97 HOH HOH . E 4 HOH B 44 144 106 HOH HOH . E 4 HOH B 45 145 181 HOH HOH . E 4 HOH B 46 146 67 HOH HOH . E 4 HOH B 47 147 14 HOH HOH . E 4 HOH B 48 148 51 HOH HOH . E 4 HOH B 49 149 34 HOH HOH . E 4 HOH B 50 150 69 HOH HOH . E 4 HOH B 51 151 211 HOH HOH . E 4 HOH B 52 152 55 HOH HOH . E 4 HOH B 53 153 32 HOH HOH . E 4 HOH B 54 154 31 HOH HOH . E 4 HOH B 55 155 99 HOH HOH . E 4 HOH B 56 156 163 HOH HOH . E 4 HOH B 57 157 132 HOH HOH . E 4 HOH B 58 158 197 HOH HOH . E 4 HOH B 59 159 124 HOH HOH . E 4 HOH B 60 160 188 HOH HOH . E 4 HOH B 61 161 128 HOH HOH . E 4 HOH B 62 162 156 HOH HOH . E 4 HOH B 63 163 215 HOH HOH . E 4 HOH B 64 164 133 HOH HOH . E 4 HOH B 65 165 169 HOH HOH . E 4 HOH B 66 166 117 HOH HOH . E 4 HOH B 67 167 203 HOH HOH . E 4 HOH B 68 168 198 HOH HOH . E 4 HOH B 69 169 72 HOH HOH . E 4 HOH B 70 170 194 HOH HOH . E 4 HOH B 71 171 84 HOH HOH . E 4 HOH B 72 172 172 HOH HOH . E 4 HOH B 73 173 135 HOH HOH . E 4 HOH B 74 174 193 HOH HOH . E 4 HOH B 75 175 47 HOH HOH . E 4 HOH B 76 176 170 HOH HOH . E 4 HOH B 77 177 59 HOH HOH . E 4 HOH B 78 178 71 HOH HOH . E 4 HOH B 79 179 64 HOH HOH . E 4 HOH B 80 180 136 HOH HOH . E 4 HOH B 81 181 180 HOH HOH . E 4 HOH B 82 182 116 HOH HOH . E 4 HOH B 83 183 201 HOH HOH . E 4 HOH B 84 184 205 HOH HOH . E 4 HOH B 85 185 210 HOH HOH . E 4 HOH B 86 186 182 HOH HOH . E 4 HOH B 87 187 125 HOH HOH . E 4 HOH B 88 188 105 HOH HOH . E 4 HOH B 89 189 147 HOH HOH . E 4 HOH B 90 190 204 HOH HOH . E 4 HOH B 91 191 168 HOH HOH . E 4 HOH B 92 192 113 HOH HOH . E 4 HOH B 93 193 165 HOH HOH . E 4 HOH B 94 194 184 HOH HOH . E 4 HOH B 95 195 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 25.673 40.474 34.589 1 41.01 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 3 25.125 39.284 34.028 1 24.5 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 3 27.191 40.646 34.463 1 43.3 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 3 27.8 39.461 33.998 1 47.16 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 3 27.806 41.033 35.811 1 40.97 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 3 27.508 42.376 36.157 1 40.63 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #