data_5Y2Q
#
_model_server_result.job_id            XJ7FV80xtfV4p5a2bzyCsQ 
_model_server_result.datetime_utc      '2025-02-05 04:05:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y2q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    5Y2Q 
#
_exptl.entry_id    5Y2Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.27 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[[4-[(3,4-dichlorophenyl)methyl]piperidin-4-yl]methoxy]pyridine 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Y2Q 
_cell.length_a            68.185 
_cell.length_b            77.156 
_cell.length_c            222.01 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y2Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 125 D CYS 123 1_555 A SG CYS 138 D CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 189 D CYS 187 1_555 A SG CYS 190 D CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 B SG CYS 125 A CYS 123 1_555 B SG CYS 138 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 B SG CYS 189 A CYS 187 1_555 B SG CYS 190 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf5 C SG CYS 125 B CYS 123 1_555 C SG CYS 138 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 C SG CYS 189 B CYS 187 1_555 C SG CYS 190 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf7 D SG CYS 125 C CYS 123 1_555 D SG CYS 138 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 D SG CYS 189 C CYS 187 1_555 D SG CYS 190 C CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf9 E SG CYS 125 E CYS 123 1_555 E SG CYS 138 E CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf10 E SG CYS 189 E CYS 187 1_555 E SG CYS 190 E CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C18 H20 Cl2 N2 O' 
_chem_comp.formula_weight    351.27 
_chem_comp.id                8L3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[[4-[(3,4-dichlorophenyl)methyl]piperidin-4-yl]methoxy]pyridine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CLU CAT 8L3 sing 1 n n 
CLS CAR 8L3 sing 2 n n 
CAT CAR 8L3 doub 3 n y 
CAT CAV 8L3 sing 4 n y 
CAR CAQ 8L3 sing 5 n y 
CAV CAO 8L3 doub 6 n y 
CAQ CAP 8L3 doub 7 n y 
CAO CAP 8L3 sing 8 n y 
CAO CAN 8L3 sing 9 n n 
CAN CAE 8L3 sing 10 n n 
CAW CAE 8L3 sing 11 n n 
CAW CAA 8L3 sing 12 n n 
CAE CAD 8L3 sing 13 n n 
CAE CAF 8L3 sing 14 n n 
CAA NAB 8L3 sing 15 n n 
CAD CAC 8L3 sing 16 n n 
CAF OAG 8L3 sing 17 n n 
NAB CAC 8L3 sing 18 n n 
OAG CAH 8L3 sing 19 n n 
CAH CAI 8L3 doub 20 n y 
CAH CAM 8L3 sing 21 n y 
CAI CAJ 8L3 sing 22 n y 
CAM NAL 8L3 doub 23 n y 
CAJ CAK 8L3 doub 24 n y 
NAL CAK 8L3 sing 25 n y 
CAA H1 8L3 sing 26 n n 
CAA H2 8L3 sing 27 n n 
CAC H3 8L3 sing 28 n n 
CAC H4 8L3 sing 29 n n 
CAD H5 8L3 sing 30 n n 
CAD H6 8L3 sing 31 n n 
CAF H7 8L3 sing 32 n n 
CAF H8 8L3 sing 33 n n 
CAI H9 8L3 sing 34 n n 
CAJ H10 8L3 sing 35 n n 
CAK H11 8L3 sing 36 n n 
CAM H12 8L3 sing 37 n n 
CAN H13 8L3 sing 38 n n 
CAN H14 8L3 sing 39 n n 
CAP H15 8L3 sing 40 n n 
CAQ H16 8L3 sing 41 n n 
CAV H17 8L3 sing 42 n n 
CAW H18 8L3 sing 43 n n 
CAW H19 8L3 sing 44 n n 
NAB H20 8L3 sing 45 n n 
#
_atom_sites.entry_id                     5Y2Q 
_atom_sites.fract_transf_matrix[1][1]    0.014666 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012961 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 8L3 D 1 301 1 8L3 UNK . 
G 2 8L3 D 1 302 1 8L3 UNK . 
H 2 8L3 A 1 301 1 8L3 UNK . 
I 2 8L3 B 1 301 1 8L3 UNK . 
J 2 8L3 C 1 301 1 8L3 UNK . 
K 3 HOH D 1 401 305 HOH HOH . 
K 3 HOH D 2 402 3 HOH HOH . 
K 3 HOH D 3 403 16 HOH HOH . 
K 3 HOH D 4 404 100 HOH HOH . 
K 3 HOH D 5 405 27 HOH HOH . 
K 3 HOH D 6 406 237 HOH HOH . 
K 3 HOH D 7 407 229 HOH HOH . 
K 3 HOH D 8 408 268 HOH HOH . 
K 3 HOH D 9 409 240 HOH HOH . 
K 3 HOH D 10 410 11 HOH HOH . 
K 3 HOH D 11 411 82 HOH HOH . 
K 3 HOH D 12 412 99 HOH HOH . 
K 3 HOH D 13 413 97 HOH HOH . 
K 3 HOH D 14 414 85 HOH HOH . 
K 3 HOH D 15 415 33 HOH HOH . 
K 3 HOH D 16 416 123 HOH HOH . 
K 3 HOH D 17 417 24 HOH HOH . 
K 3 HOH D 18 418 48 HOH HOH . 
K 3 HOH D 19 419 159 HOH HOH . 
K 3 HOH D 20 420 283 HOH HOH . 
K 3 HOH D 21 421 161 HOH HOH . 
K 3 HOH D 22 422 96 HOH HOH . 
K 3 HOH D 23 423 121 HOH HOH . 
K 3 HOH D 24 424 66 HOH HOH . 
K 3 HOH D 25 425 5 HOH HOH . 
K 3 HOH D 26 426 86 HOH HOH . 
K 3 HOH D 27 427 29 HOH HOH . 
K 3 HOH D 28 428 88 HOH HOH . 
K 3 HOH D 29 429 18 HOH HOH . 
K 3 HOH D 30 430 217 HOH HOH . 
K 3 HOH D 31 431 312 HOH HOH . 
K 3 HOH D 32 432 307 HOH HOH . 
K 3 HOH D 33 433 191 HOH HOH . 
K 3 HOH D 34 434 84 HOH HOH . 
K 3 HOH D 35 435 232 HOH HOH . 
K 3 HOH D 36 436 177 HOH HOH . 
K 3 HOH D 37 437 138 HOH HOH . 
K 3 HOH D 38 438 313 HOH HOH . 
L 3 HOH A 1 401 200 HOH HOH . 
L 3 HOH A 2 402 50 HOH HOH . 
L 3 HOH A 3 403 62 HOH HOH . 
L 3 HOH A 4 404 78 HOH HOH . 
L 3 HOH A 5 405 39 HOH HOH . 
L 3 HOH A 6 406 38 HOH HOH . 
L 3 HOH A 7 407 160 HOH HOH . 
L 3 HOH A 8 408 219 HOH HOH . 
L 3 HOH A 9 409 42 HOH HOH . 
L 3 HOH A 10 410 277 HOH HOH . 
L 3 HOH A 11 411 98 HOH HOH . 
L 3 HOH A 12 412 294 HOH HOH . 
L 3 HOH A 13 413 164 HOH HOH . 
L 3 HOH A 14 414 23 HOH HOH . 
L 3 HOH A 15 415 19 HOH HOH . 
L 3 HOH A 16 416 63 HOH HOH . 
L 3 HOH A 17 417 247 HOH HOH . 
L 3 HOH A 18 418 31 HOH HOH . 
L 3 HOH A 19 419 204 HOH HOH . 
L 3 HOH A 20 420 139 HOH HOH . 
L 3 HOH A 21 421 91 HOH HOH . 
L 3 HOH A 22 422 252 HOH HOH . 
L 3 HOH A 23 423 147 HOH HOH . 
L 3 HOH A 24 424 14 HOH HOH . 
L 3 HOH A 25 425 297 HOH HOH . 
L 3 HOH A 26 426 287 HOH HOH . 
L 3 HOH A 27 427 190 HOH HOH . 
L 3 HOH A 28 428 246 HOH HOH . 
L 3 HOH A 29 429 40 HOH HOH . 
L 3 HOH A 30 430 73 HOH HOH . 
L 3 HOH A 31 431 207 HOH HOH . 
L 3 HOH A 32 432 6 HOH HOH . 
L 3 HOH A 33 433 132 HOH HOH . 
L 3 HOH A 34 434 244 HOH HOH . 
L 3 HOH A 35 435 115 HOH HOH . 
L 3 HOH A 36 436 189 HOH HOH . 
L 3 HOH A 37 437 280 HOH HOH . 
M 3 HOH B 1 401 116 HOH HOH . 
M 3 HOH B 2 402 74 HOH HOH . 
M 3 HOH B 3 403 59 HOH HOH . 
M 3 HOH B 4 404 32 HOH HOH . 
M 3 HOH B 5 405 148 HOH HOH . 
M 3 HOH B 6 406 47 HOH HOH . 
M 3 HOH B 7 407 22 HOH HOH . 
M 3 HOH B 8 408 117 HOH HOH . 
M 3 HOH B 9 409 35 HOH HOH . 
M 3 HOH B 10 410 119 HOH HOH . 
M 3 HOH B 11 411 149 HOH HOH . 
M 3 HOH B 12 412 113 HOH HOH . 
M 3 HOH B 13 413 112 HOH HOH . 
M 3 HOH B 14 414 51 HOH HOH . 
M 3 HOH B 15 415 223 HOH HOH . 
M 3 HOH B 16 416 202 HOH HOH . 
M 3 HOH B 17 417 269 HOH HOH . 
M 3 HOH B 18 418 37 HOH HOH . 
M 3 HOH B 19 419 157 HOH HOH . 
M 3 HOH B 20 420 122 HOH HOH . 
M 3 HOH B 21 421 222 HOH HOH . 
M 3 HOH B 22 422 248 HOH HOH . 
M 3 HOH B 23 423 54 HOH HOH . 
M 3 HOH B 24 424 258 HOH HOH . 
M 3 HOH B 25 425 309 HOH HOH . 
M 3 HOH B 26 426 72 HOH HOH . 
M 3 HOH B 27 427 284 HOH HOH . 
M 3 HOH B 28 428 111 HOH HOH . 
M 3 HOH B 29 429 126 HOH HOH . 
N 3 HOH C 1 401 267 HOH HOH . 
N 3 HOH C 2 402 106 HOH HOH . 
N 3 HOH C 3 403 140 HOH HOH . 
N 3 HOH C 4 404 179 HOH HOH . 
N 3 HOH C 5 405 28 HOH HOH . 
N 3 HOH C 6 406 136 HOH HOH . 
N 3 HOH C 7 407 142 HOH HOH . 
N 3 HOH C 8 408 9 HOH HOH . 
N 3 HOH C 9 409 30 HOH HOH . 
N 3 HOH C 10 410 103 HOH HOH . 
N 3 HOH C 11 411 36 HOH HOH . 
N 3 HOH C 12 412 25 HOH HOH . 
N 3 HOH C 13 413 26 HOH HOH . 
N 3 HOH C 14 414 44 HOH HOH . 
N 3 HOH C 15 415 154 HOH HOH . 
N 3 HOH C 16 416 255 HOH HOH . 
N 3 HOH C 17 417 220 HOH HOH . 
N 3 HOH C 18 418 67 HOH HOH . 
N 3 HOH C 19 419 131 HOH HOH . 
N 3 HOH C 20 420 259 HOH HOH . 
N 3 HOH C 21 421 183 HOH HOH . 
N 3 HOH C 22 422 227 HOH HOH . 
O 3 HOH E 1 301 135 HOH HOH . 
O 3 HOH E 2 302 270 HOH HOH . 
O 3 HOH E 3 303 64 HOH HOH . 
O 3 HOH E 4 304 52 HOH HOH . 
O 3 HOH E 5 305 110 HOH HOH . 
O 3 HOH E 6 306 166 HOH HOH . 
O 3 HOH E 7 307 94 HOH HOH . 
O 3 HOH E 8 308 56 HOH HOH . 
O 3 HOH E 9 309 81 HOH HOH . 
O 3 HOH E 10 310 193 HOH HOH . 
O 3 HOH E 11 311 69 HOH HOH . 
O 3 HOH E 12 312 146 HOH HOH . 
O 3 HOH E 13 313 299 HOH HOH . 
O 3 HOH E 14 314 163 HOH HOH . 
O 3 HOH E 15 315 285 HOH HOH . 
O 3 HOH E 16 316 314 HOH HOH . 
O 3 HOH E 17 317 144 HOH HOH . 
O 3 HOH E 18 318 273 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 8L3 . . . H 2 -20.484 55.552 -23.728 1 36.79 ? CAA 8L3 301 A 1 
HETATM 2 C CAC 8L3 . . . H 2 -21.461 55.887 -21.537 1 36.66 ? CAC 8L3 301 A 1 
HETATM 3 C CAD 8L3 . . . H 2 -22.155 57.145 -22.012 1 38.66 ? CAD 8L3 301 A 1 
HETATM 4 C CAE 8L3 . . . H 2 -22.459 57.016 -23.494 1 39.14 ? CAE 8L3 301 A 1 
HETATM 5 C CAF 8L3 . . . H 2 -23.407 55.833 -23.772 1 33.37 ? CAF 8L3 301 A 1 
HETATM 6 C CAH 8L3 . . . H 2 -25.663 55.167 -23.36 1 33.08 ? CAH 8L3 301 A 1 
HETATM 7 C CAI 8L3 . . . H 2 -26.922 55.388 -22.816 1 31.94 ? CAI 8L3 301 A 1 
HETATM 8 C CAJ 8L3 . . . H 2 -27.988 54.523 -23.056 1 30.94 ? CAJ 8L3 301 A 1 
HETATM 9 C CAK 8L3 . . . H 2 -27.814 53.412 -23.868 1 26.26 ? CAK 8L3 301 A 1 
HETATM 10 C CAM 8L3 . . . H 2 -25.491 54.07 -24.198 1 32.02 ? CAM 8L3 301 A 1 
HETATM 11 C CAN 8L3 . . . H 2 -23.163 58.294 -23.98 1 46.33 ? CAN 8L3 301 A 1 
HETATM 12 C CAO 8L3 . . . H 2 -23.561 58.442 -25.315 1 45.51 ? CAO 8L3 301 A 1 
HETATM 13 C CAP 8L3 . . . H 2 -22.677 58.85 -26.312 1 49.29 ? CAP 8L3 301 A 1 
HETATM 14 C CAQ 8L3 . . . H 2 -23.119 59.038 -27.619 1 54.89 ? CAQ 8L3 301 A 1 
HETATM 15 C CAR 8L3 . . . H 2 -24.459 58.843 -27.93 1 54.66 ? CAR 8L3 301 A 1 
HETATM 16 C CAT 8L3 . . . H 2 -25.357 58.46 -26.928 1 50.56 ? CAT 8L3 301 A 1 
HETATM 17 C CAV 8L3 . . . H 2 -24.899 58.275 -25.63 1 42.48 ? CAV 8L3 301 A 1 
HETATM 18 C CAW 8L3 . . . H 2 -21.156 56.809 -24.236 1 35.74 ? CAW 8L3 301 A 1 
HETATM 19 N NAB 8L3 . . . H 2 -20.208 55.678 -22.275 1 42.93 ? NAB 8L3 301 A 1 
HETATM 20 N NAL 8L3 . . . H 2 -26.561 53.179 -24.429 1 28.83 ? NAL 8L3 301 A 1 
HETATM 21 O OAG 8L3 . . . H 2 -24.658 56.072 -23.11 1 33.26 ? OAG 8L3 301 A 1 
HETATM 22 CL CLS 8L3 . . . H 2 -24.95 59.082 -29.535 1 60.05 ? CLS 8L3 301 A 1 
HETATM 23 CL CLU 8L3 . . . H 2 -27.064 58.203 -27.252 1 63.95 ? CLU 8L3 301 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#