data_5Y2U
#
_model_server_result.job_id            8qwg74LHQVoIOGTse8APog 
_model_server_result.datetime_utc      '2024-10-14 19:11:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5y2u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    5Y2U 
#
_exptl.entry_id    5Y2U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              320.274 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ALIZARIN RED' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Y2U 
_cell.length_a            82.64 
_cell.length_b            85.267 
_cell.length_c            102.466 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Y2U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C14 H8 O7 S' 
_chem_comp.formula_weight    320.274 
_chem_comp.id                AZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ALIZARIN RED' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C4 AZN doub 70 n y 
C2 C5 AZN sing 71 n y 
C2 C1 AZN sing 72 n n 
C3 C1 AZN sing 73 n n 
C3 C6 AZN doub 74 n y 
C3 C7 AZN sing 75 n y 
C4 C8 AZN sing 76 n n 
C4 C9 AZN sing 77 n y 
C5 C10 AZN doub 78 n y 
C5 O1 AZN sing 79 n n 
C8 C6 AZN sing 80 n n 
C8 O2 AZN doub 81 n n 
C9 C13 AZN doub 82 n y 
C9 H9 AZN sing 83 n n 
C10 C13 AZN sing 84 n y 
C10 O3 AZN sing 85 n n 
C11 C14 AZN doub 86 n y 
C11 C6 AZN sing 87 n y 
C11 H11 AZN sing 88 n n 
C12 C14 AZN sing 89 n y 
C12 C7 AZN doub 90 n y 
C12 H12 AZN sing 91 n n 
C14 H14 AZN sing 92 n n 
C13 S1 AZN sing 93 n n 
C1 O AZN doub 94 n n 
C7 H7 AZN sing 95 n n 
O6 S1 AZN sing 96 n n 
O6 H6 AZN sing 97 n n 
O4 S1 AZN doub 98 n n 
O3 H3 AZN sing 99 n n 
O1 H1 AZN sing 100 n n 
O5 S1 AZN doub 101 n n 
#
_atom_sites.entry_id                     5Y2U 
_atom_sites.fract_transf_matrix[1][1]    0.012101 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011728 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009759 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL B 1 301 301 CL CL . 
D 3 AZN B 1 302 1 AZN DRG . 
E 3 AZN C 1 301 1 AZN DRG . 
F 4 MES C 1 302 303 MES MES . 
G 5 HOH B 1 401 303 HOH HOH . 
G 5 HOH B 2 402 183 HOH HOH . 
G 5 HOH B 3 403 7 HOH HOH . 
G 5 HOH B 4 404 153 HOH HOH . 
G 5 HOH B 5 405 277 HOH HOH . 
G 5 HOH B 6 406 101 HOH HOH . 
G 5 HOH B 7 407 313 HOH HOH . 
G 5 HOH B 8 408 278 HOH HOH . 
G 5 HOH B 9 409 143 HOH HOH . 
G 5 HOH B 10 410 3 HOH HOH . 
G 5 HOH B 11 411 115 HOH HOH . 
G 5 HOH B 12 412 83 HOH HOH . 
G 5 HOH B 13 413 23 HOH HOH . 
G 5 HOH B 14 414 250 HOH HOH . 
G 5 HOH B 15 415 259 HOH HOH . 
G 5 HOH B 16 416 76 HOH HOH . 
G 5 HOH B 17 417 156 HOH HOH . 
G 5 HOH B 18 418 129 HOH HOH . 
G 5 HOH B 19 419 46 HOH HOH . 
G 5 HOH B 20 420 119 HOH HOH . 
G 5 HOH B 21 421 22 HOH HOH . 
G 5 HOH B 22 422 43 HOH HOH . 
G 5 HOH B 23 423 93 HOH HOH . 
G 5 HOH B 24 424 165 HOH HOH . 
G 5 HOH B 25 425 14 HOH HOH . 
G 5 HOH B 26 426 38 HOH HOH . 
G 5 HOH B 27 427 8 HOH HOH . 
G 5 HOH B 28 428 62 HOH HOH . 
G 5 HOH B 29 429 68 HOH HOH . 
G 5 HOH B 30 430 112 HOH HOH . 
G 5 HOH B 31 431 17 HOH HOH . 
G 5 HOH B 32 432 1 HOH HOH . 
G 5 HOH B 33 433 44 HOH HOH . 
G 5 HOH B 34 434 51 HOH HOH . 
G 5 HOH B 35 435 11 HOH HOH . 
G 5 HOH B 36 436 48 HOH HOH . 
G 5 HOH B 37 437 110 HOH HOH . 
G 5 HOH B 38 438 12 HOH HOH . 
G 5 HOH B 39 439 139 HOH HOH . 
G 5 HOH B 40 440 84 HOH HOH . 
G 5 HOH B 41 441 32 HOH HOH . 
G 5 HOH B 42 442 162 HOH HOH . 
G 5 HOH B 43 443 52 HOH HOH . 
G 5 HOH B 44 444 16 HOH HOH . 
G 5 HOH B 45 445 141 HOH HOH . 
G 5 HOH B 46 446 134 HOH HOH . 
G 5 HOH B 47 447 98 HOH HOH . 
G 5 HOH B 48 448 2 HOH HOH . 
G 5 HOH B 49 449 34 HOH HOH . 
G 5 HOH B 50 450 45 HOH HOH . 
G 5 HOH B 51 451 107 HOH HOH . 
G 5 HOH B 52 452 37 HOH HOH . 
G 5 HOH B 53 453 184 HOH HOH . 
G 5 HOH B 54 454 61 HOH HOH . 
G 5 HOH B 55 455 40 HOH HOH . 
G 5 HOH B 56 456 29 HOH HOH . 
G 5 HOH B 57 457 205 HOH HOH . 
G 5 HOH B 58 458 164 HOH HOH . 
G 5 HOH B 59 459 137 HOH HOH . 
G 5 HOH B 60 460 257 HOH HOH . 
G 5 HOH B 61 461 73 HOH HOH . 
G 5 HOH B 62 462 272 HOH HOH . 
G 5 HOH B 63 463 72 HOH HOH . 
G 5 HOH B 64 464 28 HOH HOH . 
G 5 HOH B 65 465 41 HOH HOH . 
G 5 HOH B 66 466 88 HOH HOH . 
G 5 HOH B 67 467 275 HOH HOH . 
G 5 HOH B 68 468 87 HOH HOH . 
G 5 HOH B 69 469 149 HOH HOH . 
G 5 HOH B 70 470 86 HOH HOH . 
G 5 HOH B 71 471 269 HOH HOH . 
G 5 HOH B 72 472 135 HOH HOH . 
G 5 HOH B 73 473 167 HOH HOH . 
G 5 HOH B 74 474 302 HOH HOH . 
G 5 HOH B 75 475 42 HOH HOH . 
G 5 HOH B 76 476 270 HOH HOH . 
G 5 HOH B 77 477 114 HOH HOH . 
G 5 HOH B 78 478 96 HOH HOH . 
G 5 HOH B 79 479 35 HOH HOH . 
G 5 HOH B 80 480 30 HOH HOH . 
G 5 HOH B 81 481 69 HOH HOH . 
G 5 HOH B 82 482 145 HOH HOH . 
G 5 HOH B 83 483 31 HOH HOH . 
G 5 HOH B 84 484 161 HOH HOH . 
G 5 HOH B 85 485 193 HOH HOH . 
G 5 HOH B 86 486 26 HOH HOH . 
G 5 HOH B 87 487 113 HOH HOH . 
G 5 HOH B 88 488 301 HOH HOH . 
G 5 HOH B 89 489 59 HOH HOH . 
G 5 HOH B 90 490 123 HOH HOH . 
G 5 HOH B 91 491 15 HOH HOH . 
G 5 HOH B 92 492 136 HOH HOH . 
G 5 HOH B 93 493 246 HOH HOH . 
G 5 HOH B 94 494 271 HOH HOH . 
G 5 HOH B 95 495 57 HOH HOH . 
G 5 HOH B 96 496 54 HOH HOH . 
G 5 HOH B 97 497 118 HOH HOH . 
G 5 HOH B 98 498 127 HOH HOH . 
G 5 HOH B 99 499 310 HOH HOH . 
G 5 HOH B 100 500 197 HOH HOH . 
G 5 HOH B 101 501 181 HOH HOH . 
G 5 HOH B 102 502 60 HOH HOH . 
G 5 HOH B 103 503 187 HOH HOH . 
G 5 HOH B 104 504 144 HOH HOH . 
G 5 HOH B 105 505 185 HOH HOH . 
G 5 HOH B 106 506 221 HOH HOH . 
G 5 HOH B 107 507 142 HOH HOH . 
G 5 HOH B 108 508 254 HOH HOH . 
G 5 HOH B 109 509 202 HOH HOH . 
G 5 HOH B 110 510 109 HOH HOH . 
G 5 HOH B 111 511 66 HOH HOH . 
G 5 HOH B 112 512 133 HOH HOH . 
G 5 HOH B 113 513 267 HOH HOH . 
G 5 HOH B 114 514 314 HOH HOH . 
G 5 HOH B 115 515 190 HOH HOH . 
G 5 HOH B 116 516 163 HOH HOH . 
H 5 HOH C 1 401 36 HOH HOH . 
H 5 HOH C 2 402 20 HOH HOH . 
H 5 HOH C 3 403 148 HOH HOH . 
H 5 HOH C 4 404 9 HOH HOH . 
H 5 HOH C 5 405 5 HOH HOH . 
H 5 HOH C 6 406 125 HOH HOH . 
H 5 HOH C 7 407 4 HOH HOH . 
H 5 HOH C 8 408 18 HOH HOH . 
H 5 HOH C 9 409 47 HOH HOH . 
H 5 HOH C 10 410 56 HOH HOH . 
H 5 HOH C 11 411 50 HOH HOH . 
H 5 HOH C 12 412 111 HOH HOH . 
H 5 HOH C 13 413 65 HOH HOH . 
H 5 HOH C 14 414 146 HOH HOH . 
H 5 HOH C 15 415 178 HOH HOH . 
H 5 HOH C 16 416 299 HOH HOH . 
H 5 HOH C 17 417 85 HOH HOH . 
H 5 HOH C 18 418 132 HOH HOH . 
H 5 HOH C 19 419 94 HOH HOH . 
H 5 HOH C 20 420 77 HOH HOH . 
H 5 HOH C 21 421 130 HOH HOH . 
H 5 HOH C 22 422 81 HOH HOH . 
H 5 HOH C 23 423 173 HOH HOH . 
H 5 HOH C 24 424 159 HOH HOH . 
H 5 HOH C 25 425 55 HOH HOH . 
H 5 HOH C 26 426 128 HOH HOH . 
H 5 HOH C 27 427 244 HOH HOH . 
H 5 HOH C 28 428 25 HOH HOH . 
H 5 HOH C 29 429 89 HOH HOH . 
H 5 HOH C 30 430 100 HOH HOH . 
H 5 HOH C 31 431 312 HOH HOH . 
H 5 HOH C 32 432 281 HOH HOH . 
H 5 HOH C 33 433 10 HOH HOH . 
H 5 HOH C 34 434 63 HOH HOH . 
H 5 HOH C 35 435 27 HOH HOH . 
H 5 HOH C 36 436 78 HOH HOH . 
H 5 HOH C 37 437 6 HOH HOH . 
H 5 HOH C 38 438 82 HOH HOH . 
H 5 HOH C 39 439 95 HOH HOH . 
H 5 HOH C 40 440 19 HOH HOH . 
H 5 HOH C 41 441 122 HOH HOH . 
H 5 HOH C 42 442 102 HOH HOH . 
H 5 HOH C 43 443 105 HOH HOH . 
H 5 HOH C 44 444 245 HOH HOH . 
H 5 HOH C 45 445 74 HOH HOH . 
H 5 HOH C 46 446 71 HOH HOH . 
H 5 HOH C 47 447 39 HOH HOH . 
H 5 HOH C 48 448 276 HOH HOH . 
H 5 HOH C 49 449 147 HOH HOH . 
H 5 HOH C 50 450 242 HOH HOH . 
H 5 HOH C 51 451 140 HOH HOH . 
H 5 HOH C 52 452 21 HOH HOH . 
H 5 HOH C 53 453 273 HOH HOH . 
H 5 HOH C 54 454 237 HOH HOH . 
H 5 HOH C 55 455 126 HOH HOH . 
H 5 HOH C 56 456 243 HOH HOH . 
H 5 HOH C 57 457 157 HOH HOH . 
H 5 HOH C 58 458 92 HOH HOH . 
H 5 HOH C 59 459 151 HOH HOH . 
H 5 HOH C 60 460 124 HOH HOH . 
H 5 HOH C 61 461 80 HOH HOH . 
H 5 HOH C 62 462 251 HOH HOH . 
H 5 HOH C 63 463 117 HOH HOH . 
H 5 HOH C 64 464 120 HOH HOH . 
H 5 HOH C 65 465 91 HOH HOH . 
H 5 HOH C 66 466 108 HOH HOH . 
H 5 HOH C 67 467 103 HOH HOH . 
H 5 HOH C 68 468 58 HOH HOH . 
H 5 HOH C 69 469 256 HOH HOH . 
H 5 HOH C 70 470 53 HOH HOH . 
H 5 HOH C 71 471 192 HOH HOH . 
H 5 HOH C 72 472 182 HOH HOH . 
H 5 HOH C 73 473 33 HOH HOH . 
H 5 HOH C 74 474 104 HOH HOH . 
H 5 HOH C 75 475 24 HOH HOH . 
H 5 HOH C 76 476 174 HOH HOH . 
H 5 HOH C 77 477 211 HOH HOH . 
H 5 HOH C 78 478 198 HOH HOH . 
H 5 HOH C 79 479 170 HOH HOH . 
H 5 HOH C 80 480 64 HOH HOH . 
H 5 HOH C 81 481 67 HOH HOH . 
H 5 HOH C 82 482 160 HOH HOH . 
H 5 HOH C 83 483 225 HOH HOH . 
H 5 HOH C 84 484 168 HOH HOH . 
H 5 HOH C 85 485 99 HOH HOH . 
H 5 HOH C 86 486 224 HOH HOH . 
H 5 HOH C 87 487 171 HOH HOH . 
H 5 HOH C 88 488 212 HOH HOH . 
H 5 HOH C 89 489 97 HOH HOH . 
H 5 HOH C 90 490 175 HOH HOH . 
H 5 HOH C 91 491 203 HOH HOH . 
H 5 HOH C 92 492 121 HOH HOH . 
H 5 HOH C 93 493 208 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 AZN . . . E 3 21.028 -9.616 -21.824 1 71.57 ? C2 AZN 301 C 1 
HETATM 2 C C3 AZN . . . E 3 21.486 -11.374 -23.387 1 65.2 ? C3 AZN 301 C 1 
HETATM 3 C C4 AZN . . . E 3 20.658 -10.573 -20.871 1 71.34 ? C4 AZN 301 C 1 
HETATM 4 C C5 AZN . . . E 3 20.968 -8.265 -21.48 1 72.12 ? C5 AZN 301 C 1 
HETATM 5 C C8 AZN . . . E 3 20.7 -11.925 -21.166 1 66.09 ? C8 AZN 301 C 1 
HETATM 6 C C9 AZN . . . E 3 20.244 -10.191 -19.603 1 73.13 ? C9 AZN 301 C 1 
HETATM 7 C C10 AZN . . . E 3 20.553 -7.883 -20.217 1 75.27 ? C10 AZN 301 C 1 
HETATM 8 C C11 AZN . . . E 3 21.163 -13.681 -22.739 1 61.64 ? C11 AZN 301 C 1 
HETATM 9 C C12 AZN . . . E 3 21.944 -13.135 -24.962 1 60.24 ? C12 AZN 301 C 1 
HETATM 10 C C14 AZN . . . E 3 21.574 -14.082 -24.009 1 60.69 ? C14 AZN 301 C 1 
HETATM 11 C C13 AZN . . . E 3 20.193 -8.843 -19.277 1 78 ? C13 AZN 301 C 1 
HETATM 12 C C1 AZN . . . E 3 21.443 -10.016 -23.091 1 68.22 ? C1 AZN 301 C 1 
HETATM 13 C C6 AZN . . . E 3 21.117 -12.324 -22.43 1 66.15 ? C6 AZN 301 C 1 
HETATM 14 C C7 AZN . . . E 3 21.898 -11.779 -24.653 1 61.84 ? C7 AZN 301 C 1 
HETATM 15 O O6 AZN . . . E 3 19.4 -9.734 -16.992 1 88.75 ? O6 AZN 301 C 1 
HETATM 16 O O4 AZN . . . E 3 20.821 -7.654 -17.052 1 89.79 ? O4 AZN 301 C 1 
HETATM 17 O O3 AZN . . . E 3 20.502 -6.558 -19.897 1 78.91 ? O3 AZN 301 C 1 
HETATM 18 O O1 AZN . . . E 3 21.318 -7.31 -22.39 1 72.86 ? O1 AZN 301 C 1 
HETATM 19 O O5 AZN . . . E 3 18.43 -7.557 -17.852 1 88.23 ? O5 AZN 301 C 1 
HETATM 20 O O AZN . . . E 3 21.77 -9.183 -23.939 1 67.1 ? O AZN 301 C 1 
HETATM 21 O O2 AZN . . . E 3 20.375 -12.753 -20.313 1 63.85 ? O2 AZN 301 C 1 
HETATM 22 S S1 AZN . . . E 3 19.692 -8.429 -17.75 1 96.03 ? S1 AZN 301 C 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           610 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           22 
#