data_5Y2W # _model_server_result.job_id M_Wmuwh9rgS5unSayhAb7g _model_server_result.datetime_utc '2024-11-16 20:45:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5Y2W # _exptl.entry_id 5Y2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.031 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5Y2W _cell.length_a 58.965 _cell.length_b 58.965 _cell.length_c 123.958 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H5 O6 P' _chem_comp.formula_weight 156.031 _chem_comp.id PGA _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P PGA sing 224 n n P O2P PGA doub 225 n n P O3P PGA sing 226 n n P O4P PGA sing 227 n n O1P C2 PGA sing 228 n n O3P HOP3 PGA sing 229 n n O4P HOP4 PGA sing 230 n n C2 C1 PGA sing 231 n n C2 H21 PGA sing 232 n n C2 H22 PGA sing 233 n n C1 O1 PGA doub 234 n n C1 O2 PGA sing 235 n n O2 HO2 PGA sing 236 n n # _atom_sites.entry_id 5Y2W _atom_sites.fract_transf_matrix[1][1] 0.016959 _atom_sites.fract_transf_matrix[1][2] 0.009791 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGA A 1 401 1 PGA PGA . C 3 HOH A 1 501 23 HOH HOH . C 3 HOH A 2 502 37 HOH HOH . C 3 HOH A 3 503 16 HOH HOH . C 3 HOH A 4 504 31 HOH HOH . C 3 HOH A 5 505 24 HOH HOH . C 3 HOH A 6 506 22 HOH HOH . C 3 HOH A 7 507 14 HOH HOH . C 3 HOH A 8 508 11 HOH HOH . C 3 HOH A 9 509 12 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 4 HOH HOH . C 3 HOH A 12 512 25 HOH HOH . C 3 HOH A 13 513 33 HOH HOH . C 3 HOH A 14 514 41 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 7 HOH HOH . C 3 HOH A 17 517 13 HOH HOH . C 3 HOH A 18 518 32 HOH HOH . C 3 HOH A 19 519 38 HOH HOH . C 3 HOH A 20 520 26 HOH HOH . C 3 HOH A 21 521 27 HOH HOH . C 3 HOH A 22 522 5 HOH HOH . C 3 HOH A 23 523 39 HOH HOH . C 3 HOH A 24 524 18 HOH HOH . C 3 HOH A 25 525 3 HOH HOH . C 3 HOH A 26 526 40 HOH HOH . C 3 HOH A 27 527 20 HOH HOH . C 3 HOH A 28 528 17 HOH HOH . C 3 HOH A 29 529 19 HOH HOH . C 3 HOH A 30 530 8 HOH HOH . C 3 HOH A 31 531 2 HOH HOH . C 3 HOH A 32 532 36 HOH HOH . C 3 HOH A 33 533 9 HOH HOH . C 3 HOH A 34 534 30 HOH HOH . C 3 HOH A 35 535 29 HOH HOH . C 3 HOH A 36 536 28 HOH HOH . C 3 HOH A 37 537 21 HOH HOH . C 3 HOH A 38 538 35 HOH HOH . C 3 HOH A 39 539 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGA . . . B 2 13.144 12.576 8.527 1 38.71 ? P PGA 401 A 1 HETATM 2 O O1P PGA . . . B 2 14.741 12.347 8.618 1 37.19 ? O1P PGA 401 A 1 HETATM 3 O O2P PGA . . . B 2 12.88 13.091 7.151 1 38.65 ? O2P PGA 401 A 1 HETATM 4 O O3P PGA . . . B 2 12.843 13.56 9.67 1 35.24 ? O3P PGA 401 A 1 HETATM 5 O O4P PGA . . . B 2 12.583 11.204 8.584 1 32.7 ? O4P PGA 401 A 1 HETATM 6 C C2 PGA . . . B 2 15.756 13.289 8.345 1 38.72 ? C2 PGA 401 A 1 HETATM 7 C C1 PGA . . . B 2 16.884 13.251 9.368 1 42.33 ? C1 PGA 401 A 1 HETATM 8 O O1 PGA . . . B 2 17.862 14.053 9.241 1 36.48 ? O1 PGA 401 A 1 HETATM 9 O O2 PGA . . . B 2 16.796 12.42 10.296 1 40.77 ? O2 PGA 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #