data_5Y3N # _model_server_result.job_id uvEwGlrEqfIwTg4GTo-Wlw _model_server_result.datetime_utc '2025-01-11 03:51:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5Y3N # _exptl.entry_id 5Y3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.6 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(6-bromanyl-1,3-benzodioxol-5-yl)methyl]-4-chloranyl-pyrazolo[3,4-d]pyrimidin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y3N _cell.length_a 69.41 _cell.length_b 69.41 _cell.length_c 252.159 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H9 Br Cl N5 O2' _chem_comp.formula_weight 382.6 _chem_comp.id 8MF _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(6-bromanyl-1,3-benzodioxol-5-yl)methyl]-4-chloranyl-pyrazolo[3,4-d]pyrimidin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 O17 8MF sing 1 n n C18 O19 8MF sing 2 n n O17 C14 8MF sing 3 n n C14 C13 8MF doub 4 n y C14 C15 8MF sing 5 n y C13 C12 8MF sing 6 n y O19 C15 8MF sing 7 n n C15 C16 8MF doub 8 n y C12 BR1 8MF sing 9 n n C12 C11 8MF doub 10 n y C16 C11 8MF sing 11 n y C11 C10 8MF sing 12 n n C10 N07 8MF sing 13 n n N07 C05 8MF sing 14 n y N07 N08 8MF sing 15 n y N04 C05 8MF doub 16 n y N04 C03 8MF sing 17 n y C05 C06 8MF sing 18 n y N08 C09 8MF doub 19 n y N21 C03 8MF sing 20 n n C03 N02 8MF doub 21 n y C09 C06 8MF sing 22 n y C06 C01 8MF doub 23 n y N02 C01 8MF sing 24 n y C01 CL1 8MF sing 25 n n C10 H1 8MF sing 26 n n C10 H2 8MF sing 27 n n C13 H3 8MF sing 28 n n C09 H4 8MF sing 29 n n C16 H5 8MF sing 30 n n C18 H6 8MF sing 31 n n C18 H7 8MF sing 32 n n N21 H8 8MF sing 33 n n N21 H9 8MF sing 34 n n # _atom_sites.entry_id 5Y3N _atom_sites.fract_transf_matrix[1][1] 0.014407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8MF A 1 601 1 8MF 8MF . C 3 HOH A 1 701 8 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 18 HOH HOH . C 3 HOH A 4 704 52 HOH HOH . C 3 HOH A 5 705 48 HOH HOH . C 3 HOH A 6 706 4 HOH HOH . C 3 HOH A 7 707 31 HOH HOH . C 3 HOH A 8 708 58 HOH HOH . C 3 HOH A 9 709 35 HOH HOH . C 3 HOH A 10 710 53 HOH HOH . C 3 HOH A 11 711 33 HOH HOH . C 3 HOH A 12 712 43 HOH HOH . C 3 HOH A 13 713 11 HOH HOH . C 3 HOH A 14 714 13 HOH HOH . C 3 HOH A 15 715 29 HOH HOH . C 3 HOH A 16 716 51 HOH HOH . C 3 HOH A 17 717 24 HOH HOH . C 3 HOH A 18 718 44 HOH HOH . C 3 HOH A 19 719 23 HOH HOH . C 3 HOH A 20 720 3 HOH HOH . C 3 HOH A 21 721 20 HOH HOH . C 3 HOH A 22 722 41 HOH HOH . C 3 HOH A 23 723 42 HOH HOH . C 3 HOH A 24 724 57 HOH HOH . C 3 HOH A 25 725 12 HOH HOH . C 3 HOH A 26 726 45 HOH HOH . C 3 HOH A 27 727 25 HOH HOH . C 3 HOH A 28 728 7 HOH HOH . C 3 HOH A 29 729 22 HOH HOH . C 3 HOH A 30 730 30 HOH HOH . C 3 HOH A 31 731 36 HOH HOH . C 3 HOH A 32 732 14 HOH HOH . C 3 HOH A 33 733 15 HOH HOH . C 3 HOH A 34 734 16 HOH HOH . C 3 HOH A 35 735 5 HOH HOH . C 3 HOH A 36 736 39 HOH HOH . C 3 HOH A 37 737 37 HOH HOH . C 3 HOH A 38 738 10 HOH HOH . C 3 HOH A 39 739 54 HOH HOH . C 3 HOH A 40 740 26 HOH HOH . C 3 HOH A 41 741 28 HOH HOH . C 3 HOH A 42 742 9 HOH HOH . C 3 HOH A 43 743 17 HOH HOH . C 3 HOH A 44 744 19 HOH HOH . C 3 HOH A 45 745 21 HOH HOH . C 3 HOH A 46 746 6 HOH HOH . C 3 HOH A 47 747 47 HOH HOH . C 3 HOH A 48 748 34 HOH HOH . C 3 HOH A 49 749 38 HOH HOH . C 3 HOH A 50 750 46 HOH HOH . C 3 HOH A 51 751 50 HOH HOH . C 3 HOH A 52 752 27 HOH HOH . C 3 HOH A 53 753 49 HOH HOH . C 3 HOH A 54 754 56 HOH HOH . C 3 HOH A 55 755 1 HOH HOH . C 3 HOH A 56 756 55 HOH HOH . C 3 HOH A 57 757 32 HOH HOH . C 3 HOH A 58 758 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 8MF . . . B 2 6.117 7.141 21.985 1 63.74 ? C10 8MF 601 A 1 HETATM 2 C C13 8MF . . . B 2 5.496 3.552 20.912 1 89.61 ? C13 8MF 601 A 1 HETATM 3 C C15 8MF . . . B 2 7.863 3.893 21.128 1 77.69 ? C15 8MF 601 A 1 HETATM 4 C C01 8MF . . . B 2 7.541 8.316 26.536 1 49.26 ? C01 8MF 601 A 1 HETATM 5 N N02 8MF . . . B 2 8.617 9.033 26.121 1 44.26 ? N02 8MF 601 A 1 HETATM 6 C C03 8MF . . . B 2 8.904 9.184 24.809 1 48.55 ? C03 8MF 601 A 1 HETATM 7 N N04 8MF . . . B 2 8.15 8.608 23.861 1 48.04 ? N04 8MF 601 A 1 HETATM 8 C C05 8MF . . . B 2 7.044 7.867 24.183 1 48.34 ? C05 8MF 601 A 1 HETATM 9 C C06 8MF . . . B 2 6.694 7.696 25.534 1 48.41 ? C06 8MF 601 A 1 HETATM 10 N N07 8MF . . . B 2 6.099 7.193 23.436 1 60.35 ? N07 8MF 601 A 1 HETATM 11 N N08 8MF . . . B 2 5.215 6.634 24.208 1 71.53 ? N08 8MF 601 A 1 HETATM 12 C C09 8MF . . . B 2 5.48 6.876 25.503 1 60.94 ? C09 8MF 601 A 1 HETATM 13 C C11 8MF . . . B 2 6.331 5.711 21.575 1 84.78 ? C11 8MF 601 A 1 HETATM 14 C C12 8MF . . . B 2 5.257 4.868 21.28 1 96.38 ? C12 8MF 601 A 1 HETATM 15 C C14 8MF . . . B 2 6.815 3.07 20.839 1 80.46 ? C14 8MF 601 A 1 HETATM 16 C C16 8MF . . . B 2 7.624 5.233 21.502 1 75.57 ? C16 8MF 601 A 1 HETATM 17 O O17 8MF . . . B 2 7.325 1.802 20.492 1 74.94 ? O17 8MF 601 A 1 HETATM 18 C C18 8MF . . . B 2 8.71 1.969 20.311 1 75.43 ? C18 8MF 601 A 1 HETATM 19 O O19 8MF . . . B 2 9.066 3.15 20.968 1 67.36 ? O19 8MF 601 A 1 HETATM 20 CL CL1 8MF . . . B 2 7.138 8.125 28.208 1 119.07 ? CL1 8MF 601 A 1 HETATM 21 N N21 8MF . . . B 2 10.029 9.925 24.379 1 47.58 ? N21 8MF 601 A 1 HETATM 22 BR BR1 8MF . . . B 2 3.435 5.491 21.373 1 120.31 ? BR1 8MF 601 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #