data_5Y3O # _model_server_result.job_id RxE9fntMBk5QYXURByIjug _model_server_result.datetime_utc '2025-01-11 01:04:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5Y3O # _exptl.entry_id 5Y3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.762 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloranyl-1-[(4-methoxy-3,5-dimethyl-pyridin-2-yl)methyl]pyrazolo[3,4-d]pyrimidin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y3O _cell.length_a 69.491 _cell.length_b 69.491 _cell.length_c 252.994 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H15 Cl N6 O' _chem_comp.formula_weight 318.762 _chem_comp.id 8M9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloranyl-1-[(4-methoxy-3,5-dimethyl-pyridin-2-yl)methyl]pyrazolo[3,4-d]pyrimidin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C14 8M9 sing 1 n n C19 O18 8M9 sing 2 n n C15 C14 8M9 doub 3 n y C15 N16 8M9 sing 4 n y C14 C13 8M9 sing 5 n y N16 C11 8M9 doub 6 n y C13 O18 8M9 sing 7 n n C13 C12 8M9 doub 8 n y C11 C12 8M9 sing 9 n y C11 C10 8M9 sing 10 n n C12 C17 8M9 sing 11 n n C10 N09 8M9 sing 12 n n N09 N08 8M9 sing 13 n y N09 C06 8M9 sing 14 n y N01 C06 8M9 doub 15 n y N01 C02 8M9 sing 16 n y N08 C07 8M9 doub 17 n y C06 C05 8M9 sing 18 n y N22 C02 8M9 sing 19 n n C02 N03 8M9 doub 20 n y C07 C05 8M9 sing 21 n y C05 C04 8M9 doub 22 n y N03 C04 8M9 sing 23 n y C04 CL1 8M9 sing 24 n n C10 H1 8M9 sing 25 n n C10 H2 8M9 sing 26 n n C15 H3 8M9 sing 27 n n C17 H4 8M9 sing 28 n n C17 H5 8M9 sing 29 n n C17 H6 8M9 sing 30 n n C20 H7 8M9 sing 31 n n C20 H8 8M9 sing 32 n n C20 H9 8M9 sing 33 n n C07 H10 8M9 sing 34 n n C19 H11 8M9 sing 35 n n C19 H12 8M9 sing 36 n n C19 H13 8M9 sing 37 n n N22 H14 8M9 sing 38 n n N22 H15 8M9 sing 39 n n # _atom_sites.entry_id 5Y3O _atom_sites.fract_transf_matrix[1][1] 0.01439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8M9 A 1 601 1 8M9 LIG . C 3 HOH A 1 701 39 HOH HOH . C 3 HOH A 2 702 8 HOH HOH . C 3 HOH A 3 703 16 HOH HOH . C 3 HOH A 4 704 9 HOH HOH . C 3 HOH A 5 705 20 HOH HOH . C 3 HOH A 6 706 29 HOH HOH . C 3 HOH A 7 707 33 HOH HOH . C 3 HOH A 8 708 7 HOH HOH . C 3 HOH A 9 709 27 HOH HOH . C 3 HOH A 10 710 15 HOH HOH . C 3 HOH A 11 711 2 HOH HOH . C 3 HOH A 12 712 11 HOH HOH . C 3 HOH A 13 713 6 HOH HOH . C 3 HOH A 14 714 31 HOH HOH . C 3 HOH A 15 715 23 HOH HOH . C 3 HOH A 16 716 18 HOH HOH . C 3 HOH A 17 717 28 HOH HOH . C 3 HOH A 18 718 40 HOH HOH . C 3 HOH A 19 719 12 HOH HOH . C 3 HOH A 20 720 10 HOH HOH . C 3 HOH A 21 721 3 HOH HOH . C 3 HOH A 22 722 22 HOH HOH . C 3 HOH A 23 723 4 HOH HOH . C 3 HOH A 24 724 1 HOH HOH . C 3 HOH A 25 725 37 HOH HOH . C 3 HOH A 26 726 38 HOH HOH . C 3 HOH A 27 727 35 HOH HOH . C 3 HOH A 28 728 21 HOH HOH . C 3 HOH A 29 729 25 HOH HOH . C 3 HOH A 30 730 24 HOH HOH . C 3 HOH A 31 731 17 HOH HOH . C 3 HOH A 32 732 26 HOH HOH . C 3 HOH A 33 733 13 HOH HOH . C 3 HOH A 34 734 32 HOH HOH . C 3 HOH A 35 735 5 HOH HOH . C 3 HOH A 36 736 30 HOH HOH . C 3 HOH A 37 737 19 HOH HOH . C 3 HOH A 38 738 34 HOH HOH . C 3 HOH A 39 739 36 HOH HOH . C 3 HOH A 40 740 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 8M9 . . . B 2 6.762 7.662 21.537 1 49.44 ? C10 8M9 601 A 1 HETATM 2 C C13 8M9 . . . B 2 7.721 3.933 21.034 1 78.23 ? C13 8M9 601 A 1 HETATM 3 C C15 8M9 . . . B 2 5.454 4.372 20.31 1 79.14 ? C15 8M9 601 A 1 HETATM 4 C C17 8M9 . . . B 2 9.082 5.879 21.964 1 58.38 ? C17 8M9 601 A 1 HETATM 5 C C20 8M9 . . . B 2 6.304 2 20.089 1 78.27 ? C20 8M9 601 A 1 HETATM 6 N N01 8M9 . . . B 2 8.656 9.121 23.647 1 51.76 ? N01 8M9 601 A 1 HETATM 7 C C02 8M9 . . . B 2 9.323 9.651 24.682 1 51.32 ? C02 8M9 601 A 1 HETATM 8 N N03 8M9 . . . B 2 8.937 9.465 25.946 1 62.16 ? N03 8M9 601 A 1 HETATM 9 C C04 8M9 . . . B 2 7.835 8.717 26.221 1 38.77 ? C04 8M9 601 A 1 HETATM 10 C C05 8M9 . . . B 2 7.089 8.13 25.146 1 53.7 ? C05 8M9 601 A 1 HETATM 11 C C06 8M9 . . . B 2 7.541 8.358 23.816 1 54.16 ? C06 8M9 601 A 1 HETATM 12 C C07 8M9 . . . B 2 5.896 7.293 24.997 1 41.21 ? C07 8M9 601 A 1 HETATM 13 N N08 8M9 . . . B 2 5.726 7.09 23.678 1 46.19 ? N08 8M9 601 A 1 HETATM 14 N N09 8M9 . . . B 2 6.661 7.704 22.988 1 41.06 ? N09 8M9 601 A 1 HETATM 15 C C11 8M9 . . . B 2 6.688 6.154 21.155 1 67.55 ? C11 8M9 601 A 1 HETATM 16 C C12 8M9 . . . B 2 7.794 5.308 21.374 1 73.16 ? C12 8M9 601 A 1 HETATM 17 C C14 8M9 . . . B 2 6.497 3.47 20.488 1 79.63 ? C14 8M9 601 A 1 HETATM 18 N N16 8M9 . . . B 2 5.583 5.665 20.648 1 69.3 ? N16 8M9 601 A 1 HETATM 19 O O18 8M9 . . . B 2 8.817 3.065 21.254 1 68.1 ? O18 8M9 601 A 1 HETATM 20 C C19 8M9 . . . B 2 9.695 2.89 20.17 1 64.87 ? C19 8M9 601 A 1 HETATM 21 CL CL1 8M9 . . . B 2 7.327 8.472 27.881 1 204.95 ? CL1 8M9 601 A 1 HETATM 22 N N22 8M9 . . . B 2 10.474 10.433 24.425 1 55.02 ? N22 8M9 601 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #