data_5Y5B # _model_server_result.job_id Qmbak19oGTQUlg3Cucmuaw _model_server_result.datetime_utc '2024-11-07 17:31:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5Y5B # _exptl.entry_id 5Y5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Y5B _cell.length_a 36.01 _cell.length_b 57.73 _cell.length_c 101.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 77 A HIS 77 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 A ND1 HIS 79 A HIS 79 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 A OD2 ASP 81 A ASP 81 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc4 A NE2 HIS 139 A HIS 139 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc5 A SG CYS 158 A CYS 158 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc6 A NE2 HIS 197 A HIS 197 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 G O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc8 C ZN ZN . A ZN 302 1_555 D O3 SO4 . A SO4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc9 C ZN ZN . A ZN 302 1_555 G O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc10 C ZN ZN . A ZN 302 1_555 G O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 304 n n S O2 SO4 doub 305 n n S O3 SO4 sing 306 n n S O4 SO4 sing 307 n n # _atom_sites.entry_id 5Y5B _atom_sites.fract_transf_matrix[1][1] 0.02777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 SO4 A 1 303 303 SO4 SO4 . E 4 EPE A 1 304 304 EPE EPE . F 4 EPE A 1 305 305 EPE EPE . G 5 HOH A 1 401 401 HOH HOH . G 5 HOH A 2 402 402 HOH HOH . G 5 HOH A 3 403 403 HOH HOH . G 5 HOH A 4 404 404 HOH HOH . G 5 HOH A 5 405 405 HOH HOH . G 5 HOH A 6 406 406 HOH HOH . G 5 HOH A 7 407 407 HOH HOH . G 5 HOH A 8 408 408 HOH HOH . G 5 HOH A 9 409 409 HOH HOH . G 5 HOH A 10 410 411 HOH HOH . G 5 HOH A 11 411 410 HOH HOH . G 5 HOH A 12 412 412 HOH HOH . G 5 HOH A 13 413 414 HOH HOH . G 5 HOH A 14 414 418 HOH HOH . G 5 HOH A 15 415 415 HOH HOH . G 5 HOH A 16 416 416 HOH HOH . G 5 HOH A 17 417 413 HOH HOH . G 5 HOH A 18 418 419 HOH HOH . G 5 HOH A 19 419 422 HOH HOH . G 5 HOH A 20 420 420 HOH HOH . G 5 HOH A 21 421 423 HOH HOH . G 5 HOH A 22 422 421 HOH HOH . G 5 HOH A 23 423 424 HOH HOH . G 5 HOH A 24 424 425 HOH HOH . G 5 HOH A 25 425 417 HOH HOH . G 5 HOH A 26 426 427 HOH HOH . G 5 HOH A 27 427 428 HOH HOH . G 5 HOH A 28 428 426 HOH HOH . G 5 HOH A 29 429 430 HOH HOH . G 5 HOH A 30 430 432 HOH HOH . G 5 HOH A 31 431 434 HOH HOH . G 5 HOH A 32 432 435 HOH HOH . G 5 HOH A 33 433 429 HOH HOH . G 5 HOH A 34 434 437 HOH HOH . G 5 HOH A 35 435 431 HOH HOH . G 5 HOH A 36 436 433 HOH HOH . G 5 HOH A 37 437 441 HOH HOH . G 5 HOH A 38 438 436 HOH HOH . G 5 HOH A 39 439 439 HOH HOH . G 5 HOH A 40 440 440 HOH HOH . G 5 HOH A 41 441 442 HOH HOH . G 5 HOH A 42 442 438 HOH HOH . G 5 HOH A 43 443 446 HOH HOH . G 5 HOH A 44 444 443 HOH HOH . G 5 HOH A 45 445 444 HOH HOH . G 5 HOH A 46 446 449 HOH HOH . G 5 HOH A 47 447 445 HOH HOH . G 5 HOH A 48 448 448 HOH HOH . G 5 HOH A 49 449 447 HOH HOH . G 5 HOH A 50 450 450 HOH HOH . G 5 HOH A 51 451 451 HOH HOH . G 5 HOH A 52 452 452 HOH HOH . G 5 HOH A 53 453 453 HOH HOH . G 5 HOH A 54 454 454 HOH HOH . G 5 HOH A 55 455 455 HOH HOH . G 5 HOH A 56 456 456 HOH HOH . G 5 HOH A 57 457 459 HOH HOH . G 5 HOH A 58 458 461 HOH HOH . G 5 HOH A 59 459 463 HOH HOH . G 5 HOH A 60 460 462 HOH HOH . G 5 HOH A 61 461 460 HOH HOH . G 5 HOH A 62 462 457 HOH HOH . G 5 HOH A 63 463 458 HOH HOH . G 5 HOH A 64 464 465 HOH HOH . G 5 HOH A 65 465 464 HOH HOH . G 5 HOH A 66 466 468 HOH HOH . G 5 HOH A 67 467 467 HOH HOH . G 5 HOH A 68 468 473 HOH HOH . G 5 HOH A 69 469 471 HOH HOH . G 5 HOH A 70 470 466 HOH HOH . G 5 HOH A 71 471 469 HOH HOH . G 5 HOH A 72 472 470 HOH HOH . G 5 HOH A 73 473 475 HOH HOH . G 5 HOH A 74 474 474 HOH HOH . G 5 HOH A 75 475 472 HOH HOH . G 5 HOH A 76 476 477 HOH HOH . G 5 HOH A 77 477 476 HOH HOH . G 5 HOH A 78 478 479 HOH HOH . G 5 HOH A 79 479 480 HOH HOH . G 5 HOH A 80 480 478 HOH HOH . G 5 HOH A 81 481 481 HOH HOH . G 5 HOH A 82 482 484 HOH HOH . G 5 HOH A 83 483 483 HOH HOH . G 5 HOH A 84 484 482 HOH HOH . G 5 HOH A 85 485 486 HOH HOH . G 5 HOH A 86 486 495 HOH HOH . G 5 HOH A 87 487 489 HOH HOH . G 5 HOH A 88 488 488 HOH HOH . G 5 HOH A 89 489 485 HOH HOH . G 5 HOH A 90 490 493 HOH HOH . G 5 HOH A 91 491 487 HOH HOH . G 5 HOH A 92 492 491 HOH HOH . G 5 HOH A 93 493 494 HOH HOH . G 5 HOH A 94 494 496 HOH HOH . G 5 HOH A 95 495 490 HOH HOH . G 5 HOH A 96 496 511 HOH HOH . G 5 HOH A 97 497 492 HOH HOH . G 5 HOH A 98 498 497 HOH HOH . G 5 HOH A 99 499 501 HOH HOH . G 5 HOH A 100 500 500 HOH HOH . G 5 HOH A 101 501 502 HOH HOH . G 5 HOH A 102 502 499 HOH HOH . G 5 HOH A 103 503 504 HOH HOH . G 5 HOH A 104 504 507 HOH HOH . G 5 HOH A 105 505 503 HOH HOH . G 5 HOH A 106 506 498 HOH HOH . G 5 HOH A 107 507 506 HOH HOH . G 5 HOH A 108 508 509 HOH HOH . G 5 HOH A 109 509 505 HOH HOH . G 5 HOH A 110 510 508 HOH HOH . G 5 HOH A 111 511 512 HOH HOH . G 5 HOH A 112 512 510 HOH HOH . G 5 HOH A 113 513 521 HOH HOH . G 5 HOH A 114 514 513 HOH HOH . G 5 HOH A 115 515 514 HOH HOH . G 5 HOH A 116 516 515 HOH HOH . G 5 HOH A 117 517 517 HOH HOH . G 5 HOH A 118 518 519 HOH HOH . G 5 HOH A 119 519 516 HOH HOH . G 5 HOH A 120 520 520 HOH HOH . G 5 HOH A 121 521 518 HOH HOH . G 5 HOH A 122 522 525 HOH HOH . G 5 HOH A 123 523 522 HOH HOH . G 5 HOH A 124 524 524 HOH HOH . G 5 HOH A 125 525 523 HOH HOH . G 5 HOH A 126 526 526 HOH HOH . G 5 HOH A 127 527 531 HOH HOH . G 5 HOH A 128 528 529 HOH HOH . G 5 HOH A 129 529 530 HOH HOH . G 5 HOH A 130 530 527 HOH HOH . G 5 HOH A 131 531 536 HOH HOH . G 5 HOH A 132 532 532 HOH HOH . G 5 HOH A 133 533 533 HOH HOH . G 5 HOH A 134 534 528 HOH HOH . G 5 HOH A 135 535 534 HOH HOH . G 5 HOH A 136 536 539 HOH HOH . G 5 HOH A 137 537 538 HOH HOH . G 5 HOH A 138 538 535 HOH HOH . G 5 HOH A 139 539 537 HOH HOH . G 5 HOH A 140 540 540 HOH HOH . G 5 HOH A 141 541 542 HOH HOH . G 5 HOH A 142 542 543 HOH HOH . G 5 HOH A 143 543 544 HOH HOH . G 5 HOH A 144 544 548 HOH HOH . G 5 HOH A 145 545 541 HOH HOH . G 5 HOH A 146 546 547 HOH HOH . G 5 HOH A 147 547 546 HOH HOH . G 5 HOH A 148 548 545 HOH HOH . G 5 HOH A 149 549 549 HOH HOH . G 5 HOH A 150 550 553 HOH HOH . G 5 HOH A 151 551 654 HOH HOH . G 5 HOH A 152 552 556 HOH HOH . G 5 HOH A 153 553 552 HOH HOH . G 5 HOH A 154 554 550 HOH HOH . G 5 HOH A 155 555 554 HOH HOH . G 5 HOH A 156 556 557 HOH HOH . G 5 HOH A 157 557 555 HOH HOH . G 5 HOH A 158 558 558 HOH HOH . G 5 HOH A 159 559 559 HOH HOH . G 5 HOH A 160 560 560 HOH HOH . G 5 HOH A 161 561 561 HOH HOH . G 5 HOH A 162 562 562 HOH HOH . G 5 HOH A 163 563 564 HOH HOH . G 5 HOH A 164 564 574 HOH HOH . G 5 HOH A 165 565 563 HOH HOH . G 5 HOH A 166 566 567 HOH HOH . G 5 HOH A 167 567 565 HOH HOH . G 5 HOH A 168 568 569 HOH HOH . G 5 HOH A 169 569 566 HOH HOH . G 5 HOH A 170 570 568 HOH HOH . G 5 HOH A 171 571 571 HOH HOH . G 5 HOH A 172 572 575 HOH HOH . G 5 HOH A 173 573 573 HOH HOH . G 5 HOH A 174 574 572 HOH HOH . G 5 HOH A 175 575 579 HOH HOH . G 5 HOH A 176 576 580 HOH HOH . G 5 HOH A 177 577 570 HOH HOH . G 5 HOH A 178 578 581 HOH HOH . G 5 HOH A 179 579 576 HOH HOH . G 5 HOH A 180 580 577 HOH HOH . G 5 HOH A 181 581 578 HOH HOH . G 5 HOH A 182 582 584 HOH HOH . G 5 HOH A 183 583 582 HOH HOH . G 5 HOH A 184 584 585 HOH HOH . G 5 HOH A 185 585 583 HOH HOH . G 5 HOH A 186 586 588 HOH HOH . G 5 HOH A 187 587 586 HOH HOH . G 5 HOH A 188 588 589 HOH HOH . G 5 HOH A 189 589 590 HOH HOH . G 5 HOH A 190 590 587 HOH HOH . G 5 HOH A 191 591 591 HOH HOH . G 5 HOH A 192 592 592 HOH HOH . G 5 HOH A 193 593 593 HOH HOH . G 5 HOH A 194 594 595 HOH HOH . G 5 HOH A 195 595 594 HOH HOH . G 5 HOH A 196 596 596 HOH HOH . G 5 HOH A 197 597 597 HOH HOH . G 5 HOH A 198 598 598 HOH HOH . G 5 HOH A 199 599 599 HOH HOH . G 5 HOH A 200 600 600 HOH HOH . G 5 HOH A 201 601 601 HOH HOH . G 5 HOH A 202 602 605 HOH HOH . G 5 HOH A 203 603 604 HOH HOH . G 5 HOH A 204 604 653 HOH HOH . G 5 HOH A 205 605 603 HOH HOH . G 5 HOH A 206 606 606 HOH HOH . G 5 HOH A 207 607 607 HOH HOH . G 5 HOH A 208 608 610 HOH HOH . G 5 HOH A 209 609 609 HOH HOH . G 5 HOH A 210 610 611 HOH HOH . G 5 HOH A 211 611 655 HOH HOH . G 5 HOH A 212 612 613 HOH HOH . G 5 HOH A 213 613 614 HOH HOH . G 5 HOH A 214 614 615 HOH HOH . G 5 HOH A 215 615 616 HOH HOH . G 5 HOH A 216 616 618 HOH HOH . G 5 HOH A 217 617 617 HOH HOH . G 5 HOH A 218 618 619 HOH HOH . G 5 HOH A 219 619 620 HOH HOH . G 5 HOH A 220 620 621 HOH HOH . G 5 HOH A 221 621 622 HOH HOH . G 5 HOH A 222 622 623 HOH HOH . G 5 HOH A 223 623 624 HOH HOH . G 5 HOH A 224 624 626 HOH HOH . G 5 HOH A 225 625 625 HOH HOH . G 5 HOH A 226 626 656 HOH HOH . G 5 HOH A 227 627 628 HOH HOH . G 5 HOH A 228 628 629 HOH HOH . G 5 HOH A 229 629 630 HOH HOH . G 5 HOH A 230 630 631 HOH HOH . G 5 HOH A 231 631 632 HOH HOH . G 5 HOH A 232 632 633 HOH HOH . G 5 HOH A 233 633 634 HOH HOH . G 5 HOH A 234 634 635 HOH HOH . G 5 HOH A 235 635 636 HOH HOH . G 5 HOH A 236 636 637 HOH HOH . G 5 HOH A 237 637 638 HOH HOH . G 5 HOH A 238 638 639 HOH HOH . G 5 HOH A 239 639 640 HOH HOH . G 5 HOH A 240 640 641 HOH HOH . G 5 HOH A 241 641 644 HOH HOH . G 5 HOH A 242 642 643 HOH HOH . G 5 HOH A 243 643 645 HOH HOH . G 5 HOH A 244 644 646 HOH HOH . G 5 HOH A 245 645 647 HOH HOH . G 5 HOH A 246 646 648 HOH HOH . G 5 HOH A 247 647 657 HOH HOH . G 5 HOH A 248 648 650 HOH HOH . G 5 HOH A 249 649 651 HOH HOH . G 5 HOH A 250 650 652 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 18.426 4.82 -23.775 1 20.95 ? S SO4 303 A 1 HETATM 2 O O1 SO4 . . . D 3 17.985 6.262 -23.612 1 24.81 ? O1 SO4 303 A 1 HETATM 3 O O2 SO4 . . . D 3 18.302 4.456 -25.194 1 20.95 ? O2 SO4 303 A 1 HETATM 4 O O3 SO4 . . . D 3 17.575 3.966 -22.917 1 14.94 ? O3 SO4 303 A 1 HETATM 5 O O4 SO4 . . . D 3 19.854 4.808 -23.303 1 23.21 ? O4 SO4 303 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #