data_5Y5C # _model_server_result.job_id EL3LqxWfGAIogvL8SxIa0Q _model_server_result.datetime_utc '2024-10-11 01:24:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5y5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5Y5C # _exptl.entry_id 5Y5C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5Y5C _cell.length_a 52.49 _cell.length_b 52.49 _cell.length_c 108.39 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 160 B CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 106 B CYS 106 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C22 H32 O2' _chem_comp.formula_weight 328.488 _chem_comp.id HXA _chem_comp.mon_nstd_flag . _chem_comp.name 'DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HXA doub 152 n n C1 O2 HXA sing 153 n n C1 C2 HXA sing 154 n n O2 HO2 HXA sing 155 n n C2 C3 HXA sing 156 n n C2 H21 HXA sing 157 n n C2 H22 HXA sing 158 n n C3 C4 HXA sing 159 n n C3 H31 HXA sing 160 n n C3 H32 HXA sing 161 n n C4 C5 HXA doub 162 z n C4 H4 HXA sing 163 n n C5 C6 HXA sing 164 n n C5 H5 HXA sing 165 n n C6 C7 HXA sing 166 n n C6 H61 HXA sing 167 n n C6 H62 HXA sing 168 n n C7 C8 HXA doub 169 z n C7 H7 HXA sing 170 n n C8 C9 HXA sing 171 n n C8 H8 HXA sing 172 n n C9 C10 HXA sing 173 n n C9 H91 HXA sing 174 n n C9 H92 HXA sing 175 n n C10 C11 HXA doub 176 z n C10 H10 HXA sing 177 n n C11 C12 HXA sing 178 n n C11 H11 HXA sing 179 n n C12 C13 HXA sing 180 n n C12 H121 HXA sing 181 n n C12 H122 HXA sing 182 n n C13 C14 HXA doub 183 z n C13 H13 HXA sing 184 n n C14 C15 HXA sing 185 n n C14 H14 HXA sing 186 n n C15 C16 HXA sing 187 n n C15 H151 HXA sing 188 n n C15 H152 HXA sing 189 n n C16 C17 HXA doub 190 z n C16 H16 HXA sing 191 n n C17 C18 HXA sing 192 n n C17 H17 HXA sing 193 n n C18 C19 HXA sing 194 n n C18 H181 HXA sing 195 n n C18 H182 HXA sing 196 n n C19 C20 HXA doub 197 z n C19 H19 HXA sing 198 n n C20 C21 HXA sing 199 n n C20 H20 HXA sing 200 n n C21 C22 HXA sing 201 n n C21 H211 HXA sing 202 n n C21 H212 HXA sing 203 n n C22 H221 HXA sing 204 n n C22 H222 HXA sing 205 n n C22 H223 HXA sing 206 n n # _atom_sites.entry_id 5Y5C _atom_sites.fract_transf_matrix[1][1] 0.019051 _atom_sites.fract_transf_matrix[1][2] 0.010999 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HXA B 1 201 200 HXA HXA . D 2 HXA B 1 202 200 HXA HXA . E 3 HOH A 1 201 11 HOH HOH . E 3 HOH A 2 202 15 HOH HOH . E 3 HOH A 3 203 6 HOH HOH . E 3 HOH A 4 204 8 HOH HOH . E 3 HOH A 5 205 16 HOH HOH . E 3 HOH A 6 206 5 HOH HOH . E 3 HOH A 7 207 14 HOH HOH . E 3 HOH A 8 208 20 HOH HOH . E 3 HOH A 9 209 24 HOH HOH . E 3 HOH A 10 210 3 HOH HOH . F 3 HOH B 1 301 4 HOH HOH . F 3 HOH B 2 302 12 HOH HOH . F 3 HOH B 3 303 2 HOH HOH . F 3 HOH B 4 304 7 HOH HOH . F 3 HOH B 5 305 9 HOH HOH . F 3 HOH B 6 306 21 HOH HOH . F 3 HOH B 7 307 10 HOH HOH . F 3 HOH B 8 308 1 HOH HOH . F 3 HOH B 9 309 22 HOH HOH . F 3 HOH B 10 310 19 HOH HOH . F 3 HOH B 11 311 18 HOH HOH . F 3 HOH B 12 312 13 HOH HOH . F 3 HOH B 13 313 23 HOH HOH . F 3 HOH B 14 314 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HXA . . . C 2 27.151 -15.946 4.504 1 117.96 ? C1 HXA 201 B 1 HETATM 2 O O1 HXA . . . C 2 28.345 -16.148 4.824 1 120.34 ? O1 HXA 201 B 1 HETATM 3 O O2 HXA . . . C 2 26.351 -16.849 4.18 1 117.83 ? O2 HXA 201 B 1 HETATM 4 C C2 HXA . . . C 2 26.632 -14.534 4.514 1 115.8 ? C2 HXA 201 B 1 HETATM 5 C C3 HXA . . . C 2 25.593 -14.385 5.625 1 113.11 ? C3 HXA 201 B 1 HETATM 6 C C4 HXA . . . C 2 25.756 -13.045 6.318 1 110.77 ? C4 HXA 201 B 1 HETATM 7 C C5 HXA . . . C 2 25.062 -11.946 6 1 104.13 ? C5 HXA 201 B 1 HETATM 8 C C6 HXA . . . C 2 24.023 -11.915 4.899 1 100.36 ? C6 HXA 201 B 1 HETATM 9 C C7 HXA . . . C 2 24.697 -12.087 3.552 1 96.08 ? C7 HXA 201 B 1 HETATM 10 C C8 HXA . . . C 2 24.069 -12.382 2.411 1 88.72 ? C8 HXA 201 B 1 HETATM 11 C C9 HXA . . . C 2 22.577 -12.558 2.264 1 85.01 ? C9 HXA 201 B 1 HETATM 12 C C10 HXA . . . C 2 22.103 -11.406 1.404 1 85.88 ? C10 HXA 201 B 1 HETATM 13 C C11 HXA . . . C 2 21.63 -10.237 1.853 1 81.74 ? C11 HXA 201 B 1 HETATM 14 C C12 HXA . . . C 2 21.495 -9.89 3.317 1 79.29 ? C12 HXA 201 B 1 HETATM 15 C C13 HXA . . . C 2 20.279 -9.043 3.576 1 79.09 ? C13 HXA 201 B 1 HETATM 16 C C14 HXA . . . C 2 20.19 -7.843 3.015 1 75.35 ? C14 HXA 201 B 1 HETATM 17 C C15 HXA . . . C 2 19.003 -6.974 3.288 1 68.06 ? C15 HXA 201 B 1 HETATM 18 C C16 HXA . . . C 2 17.725 -7.694 2.927 1 64.92 ? C16 HXA 201 B 1 HETATM 19 C C17 HXA . . . C 2 16.564 -7.401 3.506 1 63.19 ? C17 HXA 201 B 1 HETATM 20 C C18 HXA . . . C 2 16.447 -6.32 4.552 1 62.71 ? C18 HXA 201 B 1 HETATM 21 C C19 HXA . . . C 2 15.324 -5.417 4.191 1 60.78 ? C19 HXA 201 B 1 HETATM 22 C C20 HXA . . . C 2 14.08 -5.822 4.246 1 61.52 ? C20 HXA 201 B 1 HETATM 23 C C21 HXA . . . C 2 13.03 -4.82 3.86 1 64.3 ? C21 HXA 201 B 1 HETATM 24 C C22 HXA . . . C 2 12.93 -3.763 4.943 1 64.78 ? C22 HXA 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #